Cow genome map

Conread name: rcki31_m16.y1

Conread position: 1-220
Cow position:
Alignm length: 237
Alignm identity: 168
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 81, 45

Conread position: 1-250
Cow position:
Alignm length: 267
Alignm identity: 200
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 74, 0

Conread position: 1-260
Cow position:
Alignm length: 286
Alignm identity: 212
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 73, 96

Conread position: 1-308
Cow position:
Alignm length: 324
Alignm identity: 234
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 74, 32

Conread position: 1-324
Cow position:
Alignm length: 340
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 283

Conread position: 1-330
Cow position:
Alignm length: 350
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 277

Conread position: 1-352
Cow position:
Alignm length: 359
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 97

Conread position: 1-395
Cow position:
Alignm length: 412
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 284

Conread position: 1-411
Cow position:
Alignm length: 430
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 154

Conread position: 1-418
Cow position:
Alignm length: 436
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 179

Conread position: 1-420
Cow position:
Alignm length: 435
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 173

Conread position: 1-423
Cow position:
Alignm length: 440
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 178

Conread position: 1-425
Cow position:
Alignm length: 440
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 282

Conread position: 1-450
Cow position:
Alignm length: 465
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 76

Conread position: 1-450
Cow position:
Alignm length: 465
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 70

Conread position: 1-450
Cow position:
Alignm length: 472
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 230

Conread position: 1-464
Cow position:
Alignm length: 487
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 192

Conread position: 1-488
Cow position:
Alignm length: 508
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 284

Conread position: 1-510
Cow position:
Alignm length: 533
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 286

Conread position: 1-519
Cow position:
Alignm length: 539
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 64

Conread position: 1-525
Cow position:
Alignm length: 545
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 230

Conread position: 1-525
Cow position:
Alignm length: 546
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 233

Conread position: 1-525
Cow position:
Alignm length: 547
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 39

Conread position: 1-525
Cow position:
Alignm length: 543
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 55

Conread position: 1-525
Cow position:
Alignm length: 562
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 289

Conread position: 1-525
Cow position:
Alignm length: 541
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 282

Conread position: 1-525
Cow position:
Alignm length: 542
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 280

Conread position: 1-525
Cow position:
Alignm length: 547
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 252

Conread position: 1-525
Cow position:
Alignm length: 545
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 283

Conread position: 1-525
Cow position:
Alignm length: 544
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 129

Conread position: 1-525
Cow position:
Alignm length: 546
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 284

Conread position: 1-525
Cow position:
Alignm length: 543
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 122

Conread position: 1-528
Cow position:
Alignm length: 552
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 181

Conread position: 1-533
Cow position:
Alignm length: 561
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 284

Conread position: 1-536
Cow position:
Alignm length: 554
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 211

Conread position: 1-536
Cow position:
Alignm length: 559
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 248

Conread position: 1-537
Cow position:
Alignm length: 566
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 357

Conread position: 2-523
Cow position:
Alignm length: 538
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 282

Conread position: 2-525
Cow position:
Alignm length: 548
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 179

Conread position: 3-303
Cow position:
Alignm length: 318
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 0

Conread position: 3-457
Cow position:
Alignm length: 467
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 107

Conread position: 5-262
Cow position:
Alignm length: 270
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 170

Conread position: 6-149
Cow position:
Alignm length: 153
Alignm identity: 116
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 7, 0

Conread position: 6-317
Cow position:
Alignm length: 328
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 278

Conread position: 6-321
Cow position:
Alignm length: 334
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 225

Conread position: 6-425
Cow position:
Alignm length: 433
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 275

Conread position: 6-455
Cow position:
Alignm length: 471
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 208

Conread position: 6-474
Cow position:
Alignm length: 489
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 212

Conread position: 6-516
Cow position:
Alignm length: 532
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 279

Conread position: 6-523
Cow position:
Alignm length: 537
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 90

Conread position: 6-524
Cow position:
Alignm length: 535
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 20

Conread position: 6-525
Cow position:
Alignm length: 541
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 43

Conread position: 6-525
Cow position:
Alignm length: 541
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 20

Conread position: 6-525
Cow position:
Alignm length: 550
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 174

Conread position: 6-525
Cow position:
Alignm length: 540
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 20

Conread position: 6-525
Cow position:
Alignm length: 553
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 279

Conread position: 6-525
Cow position:
Alignm length: 541
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 277

Conread position: 6-525
Cow position:
Alignm length: 535
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 75

Conread position: 6-525
Cow position:
Alignm length: 538
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 276

Conread position: 6-525
Cow position:
Alignm length: 540
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 278

Conread position: 6-525
Cow position:
Alignm length: 553
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 293

Conread position: 6-525
Cow position:
Alignm length: 536
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 169

Conread position: 6-525
Cow position:
Alignm length: 542
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 384

Conread position: 6-525
Cow position:
Alignm length: 542
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 273

Conread position: 6-525
Cow position:
Alignm length: 541
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 190

Conread position: 6-525
Cow position:
Alignm length: 542
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 281

Conread position: 6-525
Cow position:
Alignm length: 550
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 49

Conread position: 6-529
Cow position:
Alignm length: 545
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 258

Conread position: 6-539
Cow position:
Alignm length: 556
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 29

Conread position: 7-425
Cow position:
Alignm length: 439
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 150

Conread position: 7-513
Cow position:
Alignm length: 518
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 87

Conread position: 7-515
Cow position:
Alignm length: 547
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 174

Conread position: 7-525
Cow position:
Alignm length: 529
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 164

Conread position: 7-525
Cow position:
Alignm length: 537
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 278

Conread position: 7-530
Cow position:
Alignm length: 545
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 278

Conread position: 8-504
Cow position:
Alignm length: 518
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 98

Conread position: 8-526
Cow position:
Alignm length: 545
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 174

Conread position: 13-455
Cow position:
Alignm length: 462
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 273

Conread position: 13-525
Cow position:
Alignm length: 532
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 270

Conread position: 13-525
Cow position:
Alignm length: 535
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 168

Conread position: 16-525
Cow position:
Alignm length: 530
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 5

Conread position: 16-525
Cow position:
Alignm length: 529
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 160

Conread position: 19-496
Cow position:
Alignm length: 499
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 266

Conread position: 29-523
Cow position:
Alignm length: 525
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 22

Conread position: 42-269
Cow position:
Alignm length: 233
Alignm identity: 162
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 30, 55

Conread position: 42-525
Cow position:
Alignm length: 501
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 168

Conread position: 42-525
Cow position:
Alignm length: 508
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 174

Conread position: 42-525
Cow position:
Alignm length: 507
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 238

Conread position: 46-246
Cow position:
Alignm length: 218
Alignm identity: 165
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 31, 192

Conread position: 55-525
Cow position:
Alignm length: 499
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 230

Conread position: 71-358
Cow position:
Alignm length: 301
Alignm identity: 219
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 19, 82

Conread position: 73-537
Cow position:
Alignm length: 480
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 35

Conread position: 76-264
Cow position:
Alignm length: 196
Alignm identity: 145
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 27, 94

Conread position: 76-367
Cow position:
Alignm length: 306
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 201

Conread position: 80-425
Cow position:
Alignm length: 350
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 76

Conread position: 80-523
Cow position:
Alignm length: 455
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 89

Conread position: 82-302
Cow position:
Alignm length: 231
Alignm identity: 175
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 42, 21

Conread position: 83-425
Cow position:
Alignm length: 351
Alignm identity: 247
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 68, 141

Conread position: 86-525
Cow position:
Alignm length: 455
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 87

Conread position: 94-322
Cow position:
Alignm length: 234
Alignm identity: 172
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 57, 144

Conread position: 95-411
Cow position:
Alignm length: 328
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 50

Conread position: 95-523
Cow position:
Alignm length: 445
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 182

Conread position: 95-525
Cow position:
Alignm length: 453
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 78

Conread position: 95-525
Cow position:
Alignm length: 440
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 101

Conread position: 120-349
Cow position:
Alignm length: 235
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 0

Conread position: 120-495
Cow position:
Alignm length: 386
Alignm identity: 276
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 31, 23

Conread position: 120-525
Cow position:
Alignm length: 424
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 58

Conread position: 121-500
Cow position:
Alignm length: 385
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 105

Conread position: 122-487
Cow position:
Alignm length: 374
Alignm identity: 249
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 29, 47

Conread position: 122-525
Cow position:
Alignm length: 411
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 47

Conread position: 152-335
Cow position:
Alignm length: 186
Alignm identity: 152
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 136, 11

Conread position: 156-427
Cow position:
Alignm length: 272
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 0

Conread position: 162-549
Cow position:
Alignm length: 404
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 114

Conread position: 163-523
Cow position:
Alignm length: 369
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 105

Conread position: 163-525
Cow position:
Alignm length: 367
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 262, 105

Conread position: 164-525
Cow position:
Alignm length: 366
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 258, 98

Conread position: 182-539
Cow position:
Alignm length: 358
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 0

Conread position: 204-525
Cow position:
Alignm length: 327
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 65

Conread position: 217-501
Cow position:
Alignm length: 291
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 51

Conread position: 241-458
Cow position:
Alignm length: 219
Alignm identity: 152
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 27, 63

Conread position: 242-515
Cow position:
Alignm length: 279
Alignm identity: 211
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 121, 26

Conread position: 243-444
Cow position:
Alignm length: 203
Alignm identity: 160
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 154, 25

Conread position: 276-425
Cow position:
Alignm length: 151
Alignm identity: 125
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 37, 50

Conread position: 282-525
Cow position:
Alignm length: 248
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 91

Conread position: 282-525
Cow position:
Alignm length: 248
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 89

Conread position: 282-525
Cow position:
Alignm length: 252
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 91

Show alignments to all cow chromosomes.