Cow genome map

Conread name: rcki31_m16.y1

Conread position: 1-206
Cow position:
Alignm length: 220
Alignm identity: 172
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 73, 192

Conread position: 1-328
Cow position:
Alignm length: 345
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 0

Conread position: 1-335
Cow position:
Alignm length: 355
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 252

Conread position: 1-346
Cow position:
Alignm length: 365
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 284

Conread position: 1-348
Cow position:
Alignm length: 362
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 281

Conread position: 1-371
Cow position:
Alignm length: 390
Alignm identity: 270
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 75, 25

Conread position: 1-375
Cow position:
Alignm length: 384
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 104

Conread position: 1-445
Cow position:
Alignm length: 459
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 181

Conread position: 1-466
Cow position:
Alignm length: 487
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 283

Conread position: 1-495
Cow position:
Alignm length: 531
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 175

Conread position: 1-516
Cow position:
Alignm length: 533
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 273

Conread position: 1-516
Cow position:
Alignm length: 532
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 43

Conread position: 1-522
Cow position:
Alignm length: 544
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 284

Conread position: 1-523
Cow position:
Alignm length: 541
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 70

Conread position: 1-524
Cow position:
Alignm length: 544
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 177

Conread position: 1-525
Cow position:
Alignm length: 576
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 24

Conread position: 1-525
Cow position:
Alignm length: 546
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 284

Conread position: 1-525
Cow position:
Alignm length: 548
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 25

Conread position: 1-525
Cow position:
Alignm length: 546
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 320

Conread position: 1-525
Cow position:
Alignm length: 554
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 291

Conread position: 1-525
Cow position:
Alignm length: 546
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 25

Conread position: 1-525
Cow position:
Alignm length: 546
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 276

Conread position: 1-525
Cow position:
Alignm length: 548
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 285

Conread position: 1-525
Cow position:
Alignm length: 542
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 24

Conread position: 1-525
Cow position:
Alignm length: 548
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 59

Conread position: 1-529
Cow position:
Alignm length: 550
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 284

Conread position: 1-538
Cow position:
Alignm length: 560
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 190

Conread position: 3-368
Cow position:
Alignm length: 392
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 23

Conread position: 5-525
Cow position:
Alignm length: 546
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 28

Conread position: 5-525
Cow position:
Alignm length: 546
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 267

Conread position: 6-235
Cow position:
Alignm length: 241
Alignm identity: 180
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 114, 74

Conread position: 6-274
Cow position:
Alignm length: 286
Alignm identity: 214
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 65, 77

Conread position: 6-290
Cow position:
Alignm length: 302
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 43

Conread position: 6-366
Cow position:
Alignm length: 376
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 56

Conread position: 6-411
Cow position:
Alignm length: 435
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 292

Conread position: 6-420
Cow position:
Alignm length: 434
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 176

Conread position: 6-425
Cow position:
Alignm length: 441
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 201

Conread position: 6-496
Cow position:
Alignm length: 512
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 279

Conread position: 6-497
Cow position:
Alignm length: 531
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 181

Conread position: 6-514
Cow position:
Alignm length: 525
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 177

Conread position: 6-522
Cow position:
Alignm length: 538
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 214

Conread position: 6-524
Cow position:
Alignm length: 535
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 43

Conread position: 6-524
Cow position:
Alignm length: 541
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 279

Conread position: 6-525
Cow position:
Alignm length: 541
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 279

Conread position: 6-525
Cow position:
Alignm length: 531
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 99

Conread position: 6-525
Cow position:
Alignm length: 540
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 278

Conread position: 6-525
Cow position:
Alignm length: 540
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 8

Conread position: 6-525
Cow position:
Alignm length: 539
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 277

Conread position: 6-525
Cow position:
Alignm length: 541
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 279

Conread position: 6-525
Cow position:
Alignm length: 541
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 279

Conread position: 6-525
Cow position:
Alignm length: 543
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 175

Conread position: 6-525
Cow position:
Alignm length: 542
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 280

Conread position: 6-525
Cow position:
Alignm length: 541
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 279

Conread position: 6-532
Cow position:
Alignm length: 545
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 276

Conread position: 6-536
Cow position:
Alignm length: 552
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 279

Conread position: 7-264
Cow position:
Alignm length: 266
Alignm identity: 193
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 68, 0

Conread position: 7-356
Cow position:
Alignm length: 365
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 148

Conread position: 7-370
Cow position:
Alignm length: 382
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 33

Conread position: 7-497
Cow position:
Alignm length: 520
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 24

Conread position: 7-525
Cow position:
Alignm length: 542
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 175

Conread position: 7-525
Cow position:
Alignm length: 535
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 89

Conread position: 7-525
Cow position:
Alignm length: 540
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 240

Conread position: 7-525
Cow position:
Alignm length: 533
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 153

Conread position: 8-522
Cow position:
Alignm length: 539
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 220

Conread position: 13-511
Cow position:
Alignm length: 523
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 169

Conread position: 14-398
Cow position:
Alignm length: 400
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 35

Conread position: 16-523
Cow position:
Alignm length: 523
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 33

Conread position: 16-525
Cow position:
Alignm length: 532
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 270

Conread position: 17-425
Cow position:
Alignm length: 422
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 7

Conread position: 34-404
Cow position:
Alignm length: 385
Alignm identity: 257
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 60, 36

Conread position: 56-496
Cow position:
Alignm length: 462
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 230

Conread position: 61-233
Cow position:
Alignm length: 188
Alignm identity: 145
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 15, 117

Conread position: 80-525
Cow position:
Alignm length: 460
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 264

Conread position: 80-538
Cow position:
Alignm length: 476
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 95

Conread position: 83-323
Cow position:
Alignm length: 254
Alignm identity: 190
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 16, 93

Conread position: 94-522
Cow position:
Alignm length: 439
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 78

Conread position: 96-525
Cow position:
Alignm length: 447
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 77

Conread position: 108-375
Cow position:
Alignm length: 277
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 153

Conread position: 113-450
Cow position:
Alignm length: 342
Alignm identity: 238
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 39, 61

Conread position: 122-425
Cow position:
Alignm length: 309
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 151

Conread position: 122-466
Cow position:
Alignm length: 369
Alignm identity: 256
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 15, 43

Conread position: 124-356
Cow position:
Alignm length: 240
Alignm identity: 164
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 31, 45

Conread position: 163-525
Cow position:
Alignm length: 368
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 264, 54

Conread position: 170-511
Cow position:
Alignm length: 346
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 255, 6

Conread position: 179-529
Cow position:
Alignm length: 355
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 246, 77

Conread position: 185-529
Cow position:
Alignm length: 349
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 240, 67

Conread position: 202-390
Cow position:
Alignm length: 189
Alignm identity: 151
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 46, 0

Conread position: 214-368
Cow position:
Alignm length: 159
Alignm identity: 133
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 131, 62

Conread position: 220-525
Cow position:
Alignm length: 311
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 48

Conread position: 227-511
Cow position:
Alignm length: 299
Alignm identity: 216
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 198, 6

Conread position: 239-523
Cow position:
Alignm length: 290
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 132

Conread position: 264-525
Cow position:
Alignm length: 266
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 112

Conread position: 278-524
Cow position:
Alignm length: 251
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 44

Conread position: 293-425
Cow position:
Alignm length: 133
Alignm identity: 104
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 80, 0

Show alignments to all cow chromosomes.