Cow genome map

Conread name: rcki31_m16.y1

Conread position: 1-206
Cow position: chr9:9752223-9752005 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 172
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 73, 192

Conread position: 1-328
Cow position: chr9:6304914-6304570 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 0

Conread position: 1-335
Cow position: chr9:47882808-47883155 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 252

Conread position: 1-346
Cow position: chr9:29106353-29105990 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 284

Conread position: 1-348
Cow position: chr9:43302126-43302486 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 281

Conread position: 1-371
Cow position: chr9:5524883-5525248 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 270
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 75, 25

Conread position: 1-375
Cow position: chr9:24996829-24996461 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 104

Conread position: 1-445
Cow position: chr9:34918087-34917636 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 181

Conread position: 1-466
Cow position: chr9:22803174-22803656 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 283

Conread position: 1-495
Cow position: chr9:60590263-60589738 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 175

Conread position: 1-516
Cow position: chr9:1520059-1519543 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 273

Conread position: 1-516
Cow position: chr9:13493207-13492699 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 43

Conread position: 1-522
Cow position: chr9:2495263-2495802 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 284

Conread position: 1-523
Cow position: chr9:29193097-29193629 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 70

Conread position: 1-524
Cow position: chr9:59197325-59196795 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 177

Conread position: 1-525
Cow position: chr9:825428-825991 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 24

Conread position: 1-525
Cow position: chr9:1100072-1099531 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 284

Conread position: 1-525
Cow position: chr9:3756365-3756894 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 25

Conread position: 1-525
Cow position: chr9:6253042-6252505 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 320

Conread position: 1-525
Cow position: chr9:19155807-19156356 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 291

Conread position: 1-525
Cow position: chr9:26087534-26088063 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 25

Conread position: 1-525
Cow position: chr9:37158134-37158673 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 276

Conread position: 1-525
Cow position: chr9:42570694-42570153 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 285

Conread position: 1-525
Cow position: chr9:55031980-55031452 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 24

Conread position: 1-525
Cow position: chr9:59431974-59431438 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 59

Conread position: 1-529
Cow position: chr9:31811055-31810510 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 284

Conread position: 1-538
Cow position: chr9:13181387-13180847 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 190

Conread position: 3-368
Cow position: chr9:30737034-30737418 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 23

Conread position: 5-525
Cow position: chr9:54996097-54995574 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 28

Conread position: 5-525
Cow position: chr9:62669079-62669617 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 267

Conread position: 6-235
Cow position: chr9:13186055-13185823 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 180
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 114, 74

Conread position: 6-274
Cow position: chr9:51556438-51556156 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 214
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 65, 77

Conread position: 6-290
Cow position: chr9:5414581-5414879 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 43

Conread position: 6-366
Cow position: chr9:26577163-26576798 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 56

Conread position: 6-411
Cow position: chr9:2618312-2618742 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 292

Conread position: 6-420
Cow position: chr9:49981970-49981550 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 176

Conread position: 6-425
Cow position: chr9:3932637-3933071 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 201

Conread position: 6-496
Cow position: chr9:27781439-27781946 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 279

Conread position: 6-497
Cow position: chr9:34900953-34900431 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 181

Conread position: 6-514
Cow position: chr9:5007438-5006921 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 177

Conread position: 6-522
Cow position: chr9:17302507-17303033 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 214

Conread position: 6-524
Cow position: chr9:30401747-30401222 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 43

Conread position: 6-524
Cow position: chr9:34059160-34059695 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 279

Conread position: 6-525
Cow position: chr9:3807067-3806534 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 279

Conread position: 6-525
Cow position: chr9:4127496-4128003 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 99

Conread position: 6-525
Cow position: chr9:5628291-5627756 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 278

Conread position: 6-525
Cow position: chr9:7006212-7005678 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 8

Conread position: 6-525
Cow position: chr9:9016545-9016011 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 277

Conread position: 6-525
Cow position: chr9:16179057-16178524 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 279

Conread position: 6-525
Cow position: chr9:24917815-24918351 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 279

Conread position: 6-525
Cow position: chr9:26055503-26054983 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 175

Conread position: 6-525
Cow position: chr9:28025293-28024756 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 280

Conread position: 6-525
Cow position: chr9:42868399-42868932 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 279

Conread position: 6-532
Cow position: chr9:2548225-2548764 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 276

Conread position: 6-536
Cow position: chr9:47006206-47005668 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 279

Conread position: 7-264
Cow position: chr9:62075194-62074929 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 193
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 68, 0

Conread position: 7-356
Cow position: chr9:22755457-22755817 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 148

Conread position: 7-370
Cow position: chr9:40316598-40316229 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 33

Conread position: 7-497
Cow position: chr9:9491478-9491976 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 24

Conread position: 7-525
Cow position: chr9:5327894-5328414 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 175

Conread position: 7-525
Cow position: chr9:13472113-13472624 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 89

Conread position: 7-525
Cow position: chr9:32972838-32972304 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 240

Conread position: 7-525
Cow position: chr9:40142885-40143407 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 153

Conread position: 8-522
Cow position: chr9:2208201-2208729 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 220

Conread position: 13-511
Cow position: chr9:28702916-28702400 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 169

Conread position: 14-398
Cow position: chr9:4553255-4552876 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 35

Conread position: 16-523
Cow position: chr9:51010989-51010507 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 33

Conread position: 16-525
Cow position: chr9:2873938-2873411 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 270

Conread position: 17-425
Cow position: chr9:1850199-1850602 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 7

Conread position: 34-404
Cow position: chr9:11744250-11744625 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 257
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 60, 36

Conread position: 56-496
Cow position: chr9:51178245-51178702 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 230

Conread position: 61-233
Cow position: chr9:44623953-44624139 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 145
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 15, 117

Conread position: 80-525
Cow position: chr9:13220929-13220480 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 264

Conread position: 80-538
Cow position: chr9:1997908-1998373 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 95

Conread position: 83-323
Cow position: chr9:36622112-36621861 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 190
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 16, 93

Conread position: 94-522
Cow position: chr9:5533563-5533965 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 78

Conread position: 96-525
Cow position: chr9:52407949-52408388 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 77

Conread position: 108-375
Cow position: chr9:44821247-44820974 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 153

Conread position: 113-450
Cow position: chr9:8738295-8738616 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 238
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 39, 61

Conread position: 122-425
Cow position: chr9:33057127-33056824 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 151

Conread position: 122-466
Cow position: chr9:46162327-46162691 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 256
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 15, 43

Conread position: 124-356
Cow position: chr9:12847961-12848197 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 164
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 31, 45

Conread position: 163-525
Cow position: chr9:22319117-22319477 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 264, 54

Conread position: 170-511
Cow position: chr9:64049559-64049226 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 255, 6

Conread position: 179-529
Cow position: chr9:10939997-10939657 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 246, 77

Conread position: 185-529
Cow position: chr9:14003306-14002973 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 240, 67

Conread position: 202-390
Cow position: chr9:24725854-24725676 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 151
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 46, 0

Conread position: 214-368
Cow position: chr9:15214783-15214626 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 133
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 131, 62

Conread position: 220-525
Cow position: chr9:2484381-2484680 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 48

Conread position: 227-511
Cow position: chr9:2190483-2190197 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 216
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 198, 6

Conread position: 239-523
Cow position: chr9:27898231-27897945 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 132

Conread position: 264-525
Cow position: chr9:52402158-52401896 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 112

Conread position: 278-524
Cow position: chr9:43668011-43667768 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 44

Conread position: 293-425
Cow position: chr9:64106519-64106643 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 80, 0

Show alignments to all cow chromosomes.