Cow genome map

Conread name: rcmu12_j15.y1

Conread position: 1-97
Cow position: chr10:2394614-2394514 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 86
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 44, 0

Conread position: 1-186
Cow position: chr10:58399436-58399238 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 143
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 16, 117

Conread position: 1-187
Cow position: chr10:57563737-57563926 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 143
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 53, 95

Conread position: 1-205
Cow position: chr10:42755182-42755385 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 148
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 103, 25

Conread position: 1-209
Cow position: chr10:22977820-22977614 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 160
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 60, 47

Conread position: 1-210
Cow position: chr10:20478747-20478966 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 169
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 41, 0

Conread position: 1-219
Cow position: chr10:23135180-23135387 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 166
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 44, 103

Conread position: 1-235
Cow position: chr10:57458572-57458802 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 162
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 46, 16

Conread position: 1-237
Cow position: chr10:39314561-39314793 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 171
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 46, 107

Conread position: 1-241
Cow position: chr10:8648867-8649103 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 174
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 55, 9

Conread position: 1-241
Cow position: chr10:21424833-21424581 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 194
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 47, 105

Conread position: 1-244
Cow position: chr10:8077298-8077060 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 179
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 43, 100

Conread position: 1-245
Cow position: chr10:19590912-19590661 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 177
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 31, 96

Conread position: 1-245
Cow position: chr10:50044800-50044542 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 201
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 45, 87

Conread position: 1-247
Cow position: chr10:6490919-6490660 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 191
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 20, 120

Conread position: 1-247
Cow position: chr10:6568086-6568333 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 85

Conread position: 1-247
Cow position: chr10:30450212-30449959 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 181
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 45, 0

Conread position: 1-249
Cow position: chr10:11032646-11032394 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 199

Conread position: 1-249
Cow position: chr10:38015744-38015974 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 186
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 53, 28

Conread position: 1-249
Cow position: chr10:51221217-51220969 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 192
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 46, 213

Conread position: 1-272
Cow position: chr10:69544484-69544209 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 200
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 52, 98

Conread position: 1-273
Cow position: chr10:29689469-29689198 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 213
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 45, 18

Conread position: 1-279
Cow position: chr10:41985038-41984747 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 214
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 45, 25

Conread position: 1-280
Cow position: chr10:10124194-10124485 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 100

Conread position: 1-281
Cow position: chr10:6038486-6038201 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 210
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 20, 100

Conread position: 1-281
Cow position: chr10:17863437-17863726 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 194
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 16, 220

Conread position: 1-281
Cow position: chr10:39081247-39081536 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 211
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 66, 82

Conread position: 1-281
Cow position: chr10:48255374-48255081 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 210
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 43, 15

Conread position: 1-281
Cow position: chr10:58746390-58746108 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 202
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 62, 46

Conread position: 1-284
Cow position: chr10:2407266-2406987 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 209
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 96, 26

Conread position: 1-284
Cow position: chr10:3115328-3115628 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 221
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 41, 113

Conread position: 1-284
Cow position: chr10:19127059-19126770 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 222
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 39, 120

Conread position: 1-287
Cow position: chr10:9341883-9341587 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 225
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 44, 15

Conread position: 1-287
Cow position: chr10:22479874-22479578 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 219
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 43, 26

Conread position: 1-287
Cow position: chr10:29339535-29339249 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 197
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 102, 93

Conread position: 1-288
Cow position: chr10:19704656-19704362 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 214
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 48, 25

Conread position: 1-288
Cow position: chr10:38429694-38429402 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 103

Conread position: 1-288
Cow position: chr10:56705740-56705436 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 211
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 40, 8

Conread position: 1-292
Cow position: chr10:59153804-59153509 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 116

Conread position: 1-295
Cow position: chr10:25478951-25479247 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 227
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 38, 100

Conread position: 1-304
Cow position: chr10:50776555-50776869 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 224
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 13, 101

Conread position: 1-317
Cow position: chr10:33002391-33002080 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 234
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 41, 24

Conread position: 1-349
Cow position: chr10:6012184-6011846 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 250
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 25, 122

Conread position: 2-221
Cow position: chr10:35975412-35975619 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 156
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 102, 24

Conread position: 2-234
Cow position: chr10:16650074-16649838 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 160
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 61, 105

Conread position: 2-234
Cow position: chr10:31855182-31855426 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 183
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 44, 98

Conread position: 2-237
Cow position: chr10:53821067-53820832 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 180
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 19, 74

Conread position: 2-247
Cow position: chr10:8413198-8412947 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 192
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 39, 15

Conread position: 2-247
Cow position: chr10:27576315-27576559 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 191
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 44, 90

Conread position: 2-249
Cow position: chr10:24785955-24786214 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 197
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 44, 99

Conread position: 2-284
Cow position: chr10:23949071-23948773 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 2-295
Cow position: chr10:23096928-23096623 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 206
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 45, 94

Conread position: 3-193
Cow position: chr10:17699163-17698974 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 146
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 43, 95

Conread position: 3-208
Cow position: chr10:46468835-46468632 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 165
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 43, 87

Conread position: 3-281
Cow position: chr10:9568771-9568486 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 193
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 28, 16

Conread position: 3-281
Cow position: chr10:49624612-49624910 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 211
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 40, 0

Conread position: 3-306
Cow position: chr10:55011992-55012300 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 221
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 51, 119

Conread position: 4-201
Cow position: chr10:38155315-38155513 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 147
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 128, 23

Conread position: 4-256
Cow position: chr10:1070287-1070032 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 190
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 42, 29

Conread position: 4-284
Cow position: chr10:65072258-65071972 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 195
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 42, 22

Conread position: 5-247
Cow position: chr10:20110083-20109846 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 225, 100

Conread position: 5-247
Cow position: chr10:62516733-62516986 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 183
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 41, 94

Conread position: 8-295
Cow position: chr10:27538368-27538656 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 201
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 122, 37

Conread position: 9-276
Cow position: chr10:15874218-15873939 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 209
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 36, 83

Conread position: 10-249
Cow position: chr10:66753096-66753345 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 187
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 30, 17

Conread position: 10-287
Cow position: chr10:907832-908100 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 203
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 123, 46

Conread position: 10-344
Cow position: chr10:3986071-3986426 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 246
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 36, 92

Conread position: 21-234
Cow position: chr10:12290145-12290350 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 157
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 32, 80

Conread position: 26-244
Cow position: chr10:35307095-35306880 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 161
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 20, 69

Conread position: 27-267
Cow position: chr10:66874940-66874697 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 165
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 27, 76

Conread position: 27-284
Cow position: chr10:31368851-31368591 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 196
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 79, 9

Conread position: 30-287
Cow position: chr10:15391374-15391638 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 193
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 76, 27

Conread position: 36-317
Cow position: chr10:30741269-30741551 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 195
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 94, 87

Conread position: 42-245
Cow position: chr10:69225821-69226027 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 143
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 91, 70

Conread position: 47-287
Cow position: chr10:11404235-11403991 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 177
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 83, 47

Conread position: 48-248
Cow position: chr10:62325517-62325715 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 148
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 163, 0

Conread position: 48-275
Cow position: chr10:9530083-9529859 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 175
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 58, 46

Conread position: 48-284
Cow position: chr10:58608012-58608248 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 172
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 82, 31

Conread position: 48-287
Cow position: chr10:23404103-23404347 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 176
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 85, 69

Conread position: 93-281
Cow position: chr10:51878090-51878277 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 140
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 30, 11

Conread position: 97-287
Cow position: chr10:3365825-3365639 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 145
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 9, 20

Conread position: 98-211
Cow position: chr10:42139802-42139688 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 94
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 31, 0

Conread position: 99-275
Cow position: chr10:9794707-9794526 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 145
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 57, 10

Conread position: 102-236
Cow position: chr10:48135428-48135294 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 103
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 31, 57

Conread position: 102-322
Cow position: chr10:53762160-53761946 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 172
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 31, 107

Conread position: 109-249
Cow position: chr10:68251778-68251918 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 24, 62

Conread position: 111-281
Cow position: chr10:68566146-68566315 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 129
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 22, 141

Conread position: 111-284
Cow position: chr10:31250770-31250595 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 138
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 22, 58

Conread position: 112-266
Cow position: chr10:6921688-6921846 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 127
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 21, 103

Conread position: 114-287
Cow position: chr10:66791201-66791377 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 130
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 20, 51

Conread position: 120-247
Cow position: chr10:52889258-52889131 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 100
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 132-249
Cow position: chr10:2267056-2266941 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 98
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 5, 0

Conread position: 132-287
Cow position: chr10:45299800-45299956 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 123
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 125, 116

Conread position: 133-273
Cow position: chr10:45614119-45613976 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 111
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 108, 50

Conread position: 133-273
Cow position: chr10:61426748-61426600 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 115
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 23, 6

Conread position: 145-249
Cow position: chr10:61113190-61113295 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 92
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 14, 0

Show alignments to all cow chromosomes.