Cow genome map

Conread name: rcmu12_j15.y1

Conread position: 1-157
Cow position:
Alignm length: 165
Alignm identity: 123
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 45, 99

Conread position: 1-166
Cow position:
Alignm length: 174
Alignm identity: 128
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 45, 93

Conread position: 1-174
Cow position:
Alignm length: 181
Alignm identity: 142
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 45, 107

Conread position: 1-178
Cow position:
Alignm length: 189
Alignm identity: 144
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 44, 100

Conread position: 1-178
Cow position:
Alignm length: 182
Alignm identity: 135
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 16, 48

Conread position: 1-201
Cow position:
Alignm length: 206
Alignm identity: 146
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 48, 71

Conread position: 1-210
Cow position:
Alignm length: 225
Alignm identity: 167
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 45, 18

Conread position: 1-211
Cow position:
Alignm length: 213
Alignm identity: 163
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 55, 63

Conread position: 1-230
Cow position:
Alignm length: 238
Alignm identity: 169
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 45, 114

Conread position: 1-230
Cow position:
Alignm length: 237
Alignm identity: 160
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 16, 83

Conread position: 1-232
Cow position:
Alignm length: 241
Alignm identity: 180
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 41, 89

Conread position: 1-232
Cow position:
Alignm length: 239
Alignm identity: 166
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 16, 98

Conread position: 1-235
Cow position:
Alignm length: 242
Alignm identity: 173
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 45, 102

Conread position: 1-237
Cow position:
Alignm length: 238
Alignm identity: 165
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 89, 45

Conread position: 1-237
Cow position:
Alignm length: 247
Alignm identity: 174
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 46, 97

Conread position: 1-237
Cow position:
Alignm length: 248
Alignm identity: 178
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 8, 101

Conread position: 1-238
Cow position:
Alignm length: 244
Alignm identity: 171
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 45, 101

Conread position: 1-239
Cow position:
Alignm length: 243
Alignm identity: 168
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 132, 35

Conread position: 1-241
Cow position:
Alignm length: 249
Alignm identity: 171
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 84, 16

Conread position: 1-244
Cow position:
Alignm length: 252
Alignm identity: 181
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 45, 105

Conread position: 1-247
Cow position:
Alignm length: 249
Alignm identity: 173
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 101, 16

Conread position: 1-247
Cow position:
Alignm length: 257
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 87

Conread position: 1-247
Cow position:
Alignm length: 260
Alignm identity: 178
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 36, 108

Conread position: 1-247
Cow position:
Alignm length: 254
Alignm identity: 174
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 36, 99

Conread position: 1-248
Cow position:
Alignm length: 257
Alignm identity: 186
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 46, 22

Conread position: 1-249
Cow position:
Alignm length: 257
Alignm identity: 174
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 48, 59

Conread position: 1-249
Cow position:
Alignm length: 258
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 100

Conread position: 1-249
Cow position:
Alignm length: 259
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 109

Conread position: 1-249
Cow position:
Alignm length: 257
Alignm identity: 196
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 45, 85

Conread position: 1-249
Cow position:
Alignm length: 252
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 19

Conread position: 1-256
Cow position:
Alignm length: 259
Alignm identity: 188
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 45, 18

Conread position: 1-256
Cow position:
Alignm length: 262
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 100

Conread position: 1-269
Cow position:
Alignm length: 276
Alignm identity: 202
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 16, 47

Conread position: 1-275
Cow position:
Alignm length: 286
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 97

Conread position: 1-279
Cow position:
Alignm length: 287
Alignm identity: 208
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 37, 245

Conread position: 1-280
Cow position:
Alignm length: 298
Alignm identity: 219
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 45, 103

Conread position: 1-281
Cow position:
Alignm length: 304
Alignm identity: 204
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 32, 25

Conread position: 1-284
Cow position:
Alignm length: 305
Alignm identity: 221
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 46, 100

Conread position: 1-284
Cow position:
Alignm length: 296
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 15

Conread position: 1-284
Cow position:
Alignm length: 298
Alignm identity: 212
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 43, 100

Conread position: 1-287
Cow position:
Alignm length: 297
Alignm identity: 206
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 12, 31

Conread position: 1-287
Cow position:
Alignm length: 296
Alignm identity: 201
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 62, 18

Conread position: 1-287
Cow position:
Alignm length: 298
Alignm identity: 205
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 88, 110

Conread position: 1-287
Cow position:
Alignm length: 299
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 21

Conread position: 1-287
Cow position:
Alignm length: 312
Alignm identity: 226
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 45, 100

Conread position: 1-287
Cow position:
Alignm length: 300
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 1-287
Cow position:
Alignm length: 299
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 101

Conread position: 1-287
Cow position:
Alignm length: 292
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 215

Conread position: 1-288
Cow position:
Alignm length: 301
Alignm identity: 200
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 26, 53

Conread position: 1-288
Cow position:
Alignm length: 300
Alignm identity: 195
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 48, 91

Conread position: 1-292
Cow position:
Alignm length: 294
Alignm identity: 125
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 45, 95

Conread position: 1-293
Cow position:
Alignm length: 308
Alignm identity: 225
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 14, 112

Conread position: 1-295
Cow position:
Alignm length: 301
Alignm identity: 207
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 52, 48

Conread position: 1-347
Cow position:
Alignm length: 368
Alignm identity: 263
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 16, 102

Conread position: 1-353
Cow position:
Alignm length: 364
Alignm identity: 238
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 47, 16

Conread position: 2-211
Cow position:
Alignm length: 216
Alignm identity: 170
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 36, 14

Conread position: 2-232
Cow position:
Alignm length: 237
Alignm identity: 175
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 39, 93

Conread position: 2-235
Cow position:
Alignm length: 249
Alignm identity: 178
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 39, 28

Conread position: 2-237
Cow position:
Alignm length: 251
Alignm identity: 181
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 16, 103

Conread position: 2-247
Cow position:
Alignm length: 259
Alignm identity: 185
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 42, 14

Conread position: 2-247
Cow position:
Alignm length: 266
Alignm identity: 183
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 19, 0

Conread position: 2-249
Cow position:
Alignm length: 256
Alignm identity: 177
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 42, 27

Conread position: 2-284
Cow position:
Alignm length: 312
Alignm identity: 224
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 44, 86

Conread position: 2-284
Cow position:
Alignm length: 299
Alignm identity: 218
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 31, 99

Conread position: 2-287
Cow position:
Alignm length: 294
Alignm identity: 206
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 41, 95

Conread position: 2-287
Cow position:
Alignm length: 297
Alignm identity: 212
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 43, 100

Conread position: 2-328
Cow position:
Alignm length: 349
Alignm identity: 245
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 44, 111

Conread position: 3-279
Cow position:
Alignm length: 288
Alignm identity: 206
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 44, 95

Conread position: 3-297
Cow position:
Alignm length: 304
Alignm identity: 213
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 42, 98

Conread position: 4-245
Cow position:
Alignm length: 248
Alignm identity: 175
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 45, 18

Conread position: 4-261
Cow position:
Alignm length: 265
Alignm identity: 199
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 40, 78

Conread position: 5-188
Cow position:
Alignm length: 189
Alignm identity: 146
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 51, 93

Conread position: 5-284
Cow position:
Alignm length: 290
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 96

Conread position: 5-287
Cow position:
Alignm length: 290
Alignm identity: 210
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 125, 14

Conread position: 5-304
Cow position:
Alignm length: 307
Alignm identity: 215
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 27, 91

Conread position: 6-247
Cow position:
Alignm length: 255
Alignm identity: 180
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 38, 107

Conread position: 6-275
Cow position:
Alignm length: 297
Alignm identity: 223
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 36, 122

Conread position: 6-287
Cow position:
Alignm length: 295
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 15

Conread position: 6-292
Cow position:
Alignm length: 308
Alignm identity: 211
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 12, 96

Conread position: 7-233
Cow position:
Alignm length: 236
Alignm identity: 164
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 39, 86

Conread position: 7-259
Cow position:
Alignm length: 269
Alignm identity: 186
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 38, 11

Conread position: 8-281
Cow position:
Alignm length: 281
Alignm identity: 201
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 48, 15

Conread position: 9-284
Cow position:
Alignm length: 287
Alignm identity: 206
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 38, 98

Conread position: 9-287
Cow position:
Alignm length: 298
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 99

Conread position: 10-219
Cow position:
Alignm length: 220
Alignm identity: 166
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 37, 0

Conread position: 10-246
Cow position:
Alignm length: 253
Alignm identity: 173
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 34, 93

Conread position: 11-249
Cow position:
Alignm length: 244
Alignm identity: 174
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 50, 87

Conread position: 12-281
Cow position:
Alignm length: 277
Alignm identity: 195
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 125, 90

Conread position: 14-247
Cow position:
Alignm length: 237
Alignm identity: 168
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 49, 85

Conread position: 15-287
Cow position:
Alignm length: 280
Alignm identity: 194
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 95, 21

Conread position: 19-284
Cow position:
Alignm length: 286
Alignm identity: 205
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 23, 100

Conread position: 21-295
Cow position:
Alignm length: 283
Alignm identity: 206
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 20, 80

Conread position: 22-294
Cow position:
Alignm length: 288
Alignm identity: 198
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 21, 103

Conread position: 31-222
Cow position:
Alignm length: 193
Alignm identity: 141
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 102, 66

Conread position: 31-240
Cow position:
Alignm length: 215
Alignm identity: 158
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 18, 49

Conread position: 32-245
Cow position:
Alignm length: 216
Alignm identity: 154
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 125, 7

Conread position: 33-249
Cow position:
Alignm length: 220
Alignm identity: 162
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 14, 64

Conread position: 39-248
Cow position:
Alignm length: 211
Alignm identity: 152
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 94, 55

Conread position: 40-287
Cow position:
Alignm length: 258
Alignm identity: 173
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 9, 0

Conread position: 49-284
Cow position:
Alignm length: 246
Alignm identity: 174
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 81, 60

Conread position: 54-245
Cow position:
Alignm length: 197
Alignm identity: 141
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 79, 157

Conread position: 54-292
Cow position:
Alignm length: 251
Alignm identity: 175
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 52, 0

Conread position: 57-308
Cow position:
Alignm length: 257
Alignm identity: 190
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 194, 233

Conread position: 63-287
Cow position:
Alignm length: 230
Alignm identity: 174
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 8, 32

Conread position: 65-200
Cow position:
Alignm length: 137
Alignm identity: 106
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 68, 29

Conread position: 75-245
Cow position:
Alignm length: 178
Alignm identity: 131
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 31, 19

Conread position: 75-249
Cow position:
Alignm length: 176
Alignm identity: 137
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 58, 19

Conread position: 77-221
Cow position:
Alignm length: 146
Alignm identity: 107
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 56, 67

Conread position: 85-232
Cow position:
Alignm length: 152
Alignm identity: 118
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 48, 19

Conread position: 86-287
Cow position:
Alignm length: 212
Alignm identity: 151
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 47, 30

Conread position: 95-284
Cow position:
Alignm length: 200
Alignm identity: 157
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 38, 17

Conread position: 95-284
Cow position:
Alignm length: 200
Alignm identity: 157
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 38, 17

Conread position: 97-278
Cow position:
Alignm length: 184
Alignm identity: 141
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 10, 21

Conread position: 98-247
Cow position:
Alignm length: 152
Alignm identity: 120
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 8, 0

Conread position: 100-281
Cow position:
Alignm length: 194
Alignm identity: 140
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 33, 5

Conread position: 102-287
Cow position:
Alignm length: 188
Alignm identity: 141
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 69, 34

Conread position: 110-284
Cow position:
Alignm length: 182
Alignm identity: 132
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 23, 98

Conread position: 111-278
Cow position:
Alignm length: 176
Alignm identity: 128
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 22, 9

Conread position: 115-287
Cow position:
Alignm length: 179
Alignm identity: 130
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 19, 38

Conread position: 121-287
Cow position:
Alignm length: 170
Alignm identity: 127
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 12, 110

Conread position: 122-247
Cow position:
Alignm length: 131
Alignm identity: 104
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 11, 108

Conread position: 123-274
Cow position:
Alignm length: 158
Alignm identity: 128
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 10, 0

Conread position: 123-285
Cow position:
Alignm length: 169
Alignm identity: 129
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 9, 88

Conread position: 132-249
Cow position:
Alignm length: 118
Alignm identity: 97
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 132-287
Cow position:
Alignm length: 161
Alignm identity: 126
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 118, 0

Conread position: 133-273
Cow position:
Alignm length: 144
Alignm identity: 106
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 110, 0

Conread position: 144-281
Cow position:
Alignm length: 143
Alignm identity: 113
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 107, 45

Conread position: 145-249
Cow position:
Alignm length: 105
Alignm identity: 89
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 16, 0

Conread position: 145-281
Cow position:
Alignm length: 142
Alignm identity: 122
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 106, 0

Conread position: 147-287
Cow position:
Alignm length: 147
Alignm identity: 113
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 18, 81

Conread position: 148-273
Cow position:
Alignm length: 129
Alignm identity: 101
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 99, 73

Conread position: 148-281
Cow position:
Alignm length: 137
Alignm identity: 106
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 95, 104

Conread position: 151-287
Cow position:
Alignm length: 142
Alignm identity: 111
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 101, 0

Conread position: 160-280
Cow position:
Alignm length: 126
Alignm identity: 106
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 91, 6

Show alignments to all cow chromosomes.