Cow genome map
| Conread name: | rcmu12_j15.y1 |
| Conread position: | 1-230 |
| Cow position: | chr12:28559134-28559367 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 1-237 |
| Cow position: | chr12:3757204-3756968 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 16, 101 |
| Conread position: | 1-237 |
| Cow position: | chr12:27495844-27496080 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 46, 102 |
| Conread position: | 1-241 |
| Cow position: | chr12:27365761-27366010 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 36, 215 |
| Conread position: | 1-247 |
| Cow position: | chr12:30596302-30596558 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 17, 29 |
| Conread position: | 1-247 |
| Cow position: | chr12:31198598-31198857 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 43, 8 |
| Conread position: | 1-248 |
| Cow position: | chr12:23379408-23379662 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 30, 92 |
| Conread position: | 1-249 |
| Cow position: | chr12:18769239-18768979 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 1-249 |
| Cow position: | chr12:21828924-21829164 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 197 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 45, 100 |
| Conread position: | 1-249 |
| Cow position: | chr12:30064782-30065026 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 188 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 132, 49 |
| Conread position: | 1-279 |
| Cow position: | chr12:25312537-25312249 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 78 |
| Conread position: | 1-282 |
| Cow position: | chr12:45226148-45225865 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 39, 15 |
| Conread position: | 1-284 |
| Cow position: | chr12:35354624-35354891 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 44, 96 |
| Conread position: | 1-287 |
| Cow position: | chr12:24559192-24559493 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 215 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 43, 18 |
| Conread position: | 1-287 |
| Cow position: | chr12:25606541-25606841 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 1-287 |
| Cow position: | chr12:25619542-25619244 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 221 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 20, 118 |
| Conread position: | 1-287 |
| Cow position: | chr12:29448482-29448778 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 34, 18 |
| Conread position: | 1-290 |
| Cow position: | chr12:27055445-27055736 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 44, 110 |
| Conread position: | 2-236 |
| Cow position: | chr12:30688177-30688412 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 44, 84 |
| Conread position: | 2-247 |
| Cow position: | chr12:1223509-1223256 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 234 |
| Conread position: | 2-247 |
| Cow position: | chr12:32413347-32413605 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 42, 76 |
| Conread position: | 2-256 |
| Cow position: | chr12:47064022-47063780 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 131, 53 |
| Conread position: | 2-284 |
| Cow position: | chr12:41642268-41642563 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 211 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 13, 95 |
| Conread position: | 2-287 |
| Cow position: | chr12:5797710-5797435 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 81 |
| Conread position: | 3-233 |
| Cow position: | chr12:3134659-3134431 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 44, 96 |
| Conread position: | 3-236 |
| Cow position: | chr12:3212164-3212396 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 42, 93 |
| Conread position: | 10-211 |
| Cow position: | chr12:38484549-38484340 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 167 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 35, 160 |
| Conread position: | 10-213 |
| Cow position: | chr12:44743342-44743549 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 27, 89 |
| Conread position: | 10-249 |
| Cow position: | chr12:27038913-27038651 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 30, 91 |
| Conread position: | 10-283 |
| Cow position: | chr12:14325424-14325144 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 25, 119 |
| Conread position: | 12-247 |
| Cow position: | chr12:4020642-4020400 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 20, 7 |
| Conread position: | 12-295 |
| Cow position: | chr12:17110045-17109756 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 34, 89 |
| Conread position: | 22-284 |
| Cow position: | chr12:48425576-48425841 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 49, 24 |
| Conread position: | 27-245 |
| Cow position: | chr12:4582819-4583033 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 81, 21 |
| Conread position: | 48-249 |
| Cow position: | chr12:24204422-24204221 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 16, 73 |
| Conread position: | 48-284 |
| Cow position: | chr12:7996301-7996542 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 85, 27 |
| Conread position: | 53-273 |
| Cow position: | chr12:31528958-31528735 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 80, 41 |
| Conread position: | 67-287 |
| Cow position: | chr12:40716134-40715914 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 169 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 68, 14 |
| Conread position: | 78-287 |
| Cow position: | chr12:18966837-18966622 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 59, 18 |
| Conread position: | 91-249 |
| Cow position: | chr12:13657816-13657652 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 97-247 |
| Cow position: | chr12:17262790-17262941 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 97-270 |
| Cow position: | chr12:44057454-44057631 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 9, 13 |
| Conread position: | 102-247 |
| Cow position: | chr12:7645862-7645719 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 107-276 |
| Cow position: | chr12:29691248-29691073 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 109-249 |
| Cow position: | chr12:5497875-5497735 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 24, 119 |
| Conread position: | 109-287 |
| Cow position: | chr12:18093840-18094024 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 28, 89 |
| Conread position: | 113-249 |
| Cow position: | chr12:45541662-45541799 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 113-281 |
| Cow position: | chr12:25933635-25933811 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 123-249 |
| Cow position: | chr12:15984780-15984656 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 132-247 |
| Cow position: | chr12:39754257-39754372 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 132-250 |
| Cow position: | chr12:14855785-14855903 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 97 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 132-287 |
| Cow position: | chr12:7274724-7274571 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 111, 7 |
| Conread position: | 133-353 |
| Cow position: | chr12:9131242-9131471 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 79, 201 |
| Conread position: | 140-284 |
| Cow position: | chr12:28017028-28017177 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 144-304 |
| Cow position: | chr12:43671689-43671853 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 107, 93 |
| Conread position: | 152-287 |
| Cow position: | chr12:36109268-36109127 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 99, 0 |
Show alignments to all cow chromosomes.