Cow genome map

Conread name: rcmu12_j15.y1

Conread position: 1-178
Cow position: chr14:18238310-18238127 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 138
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 45, 98

Conread position: 1-195
Cow position: chr14:39302197-39302389 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 138
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 45, 16

Conread position: 1-201
Cow position: chr14:39877437-39877631 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 150
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 132, 18

Conread position: 1-204
Cow position: chr14:19957741-19957950 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 153
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 46, 15

Conread position: 1-204
Cow position: chr14:39821333-39821123 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 165
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 15, 104

Conread position: 1-208
Cow position: chr14:18984735-18984941 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 150
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 62, 16

Conread position: 1-208
Cow position: chr14:34221224-34221014 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 165
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 44, 88

Conread position: 1-211
Cow position: chr14:10090721-10090508 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 159
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 40, 98

Conread position: 1-213
Cow position: chr14:10742672-10742462 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 169
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 60, 9

Conread position: 1-223
Cow position: chr14:25378325-25378557 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 171
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 45, 112

Conread position: 1-237
Cow position: chr14:20069355-20069581 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 165
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 150, 30

Conread position: 1-239
Cow position: chr14:31399741-31399518 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 179
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 55, 96

Conread position: 1-240
Cow position: chr14:37678833-37679082 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 185
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 43, 18

Conread position: 1-243
Cow position: chr14:18448839-18449091 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 188
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 16, 116

Conread position: 1-245
Cow position: chr14:43565734-43565962 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 183
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 44, 96

Conread position: 1-247
Cow position: chr14:20435564-20435306 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 176
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 45, 116

Conread position: 1-247
Cow position: chr14:23107498-23107237 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 191
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 22, 93

Conread position: 1-247
Cow position: chr14:26960269-26960502 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 171
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 132, 16

Conread position: 1-247
Cow position: chr14:44594965-44595209 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 174
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 45, 25

Conread position: 1-251
Cow position: chr14:22657409-22657160 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 193
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 45, 96

Conread position: 1-261
Cow position: chr14:31785138-31784868 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 195
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 36, 101

Conread position: 1-281
Cow position: chr14:13927946-13928248 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 231
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 41, 115

Conread position: 1-284
Cow position: chr14:7582282-7582570 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 115

Conread position: 1-284
Cow position: chr14:21018282-21017988 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 15

Conread position: 1-287
Cow position: chr14:7647868-7648150 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 205
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 140, 33

Conread position: 1-287
Cow position: chr14:8488350-8488066 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 86

Conread position: 1-287
Cow position: chr14:21691104-21691406 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 214
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 40, 118

Conread position: 1-287
Cow position: chr14:38355354-38355059 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 206
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 20, 15

Conread position: 1-288
Cow position: chr14:26448918-26448631 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 222
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 42, 99

Conread position: 1-293
Cow position: chr14:37333860-37333563 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 217
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 44, 87

Conread position: 1-308
Cow position: chr14:7813403-7813717 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 15

Conread position: 2-193
Cow position: chr14:14221940-14221744 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 151
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 38, 109

Conread position: 2-237
Cow position: chr14:12602045-12601811 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 170
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 44, 93

Conread position: 2-247
Cow position: chr14:10906883-10906645 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 176
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 38, 92

Conread position: 2-248
Cow position: chr14:34256751-34257006 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 185
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 31, 118

Conread position: 2-248
Cow position: chr14:46962705-46962464 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 196
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 15, 97

Conread position: 2-284
Cow position: chr14:44861073-44861359 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 199
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 47, 85

Conread position: 2-287
Cow position: chr14:26108803-26108503 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 221
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 30, 107

Conread position: 3-285
Cow position: chr14:47974151-47973856 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 163

Conread position: 3-287
Cow position: chr14:6984797-6985083 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 220
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 50, 115

Conread position: 3-287
Cow position: chr14:35700594-35700298 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 199
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 43, 97

Conread position: 4-154
Cow position: chr14:35819446-35819601 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 121
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 42, 13

Conread position: 4-245
Cow position: chr14:47604130-47604383 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 179
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 40, 0

Conread position: 5-247
Cow position: chr14:20795939-20795688 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 184
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 48, 14

Conread position: 5-275
Cow position: chr14:12559323-12559595 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 198
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 111, 46

Conread position: 10-292
Cow position: chr14:43031952-43031660 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 201
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 96, 15

Conread position: 10-353
Cow position: chr14:40165029-40164697 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 231
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 122, 18

Conread position: 11-304
Cow position: chr14:47138642-47138935 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 218
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 35, 85

Conread position: 12-281
Cow position: chr14:27104240-27103960 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 212
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 30, 89

Conread position: 13-287
Cow position: chr14:28565616-28565346 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 203
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 33, 72

Conread position: 14-255
Cow position: chr14:28326981-28327216 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 181
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 39, 35

Conread position: 19-273
Cow position: chr14:20045704-20045435 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 199
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 22, 82

Conread position: 48-237
Cow position: chr14:24436365-24436182 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 135
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 36, 47

Conread position: 48-287
Cow position: chr14:23008293-23008059 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 46

Conread position: 54-237
Cow position: chr14:8766802-8766628 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 132
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 54-284
Cow position: chr14:29860979-29860750 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 165
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 79, 108

Conread position: 54-294
Cow position: chr14:45849110-45849353 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 165
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 133, 55

Conread position: 57-256
Cow position: chr14:49049045-49049235 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 146
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 78, 36

Conread position: 57-284
Cow position: chr14:18979093-18979320 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 159
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 29, 40

Conread position: 59-248
Cow position: chr14:20429687-20429494 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 145
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 47, 35

Conread position: 61-287
Cow position: chr14:2189738-2189505 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 171
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 72, 152

Conread position: 63-247
Cow position: chr14:21084444-21084255 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 137
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 41, 31

Conread position: 64-232
Cow position: chr14:29057672-29057836 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 124
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 42, 33

Conread position: 65-233
Cow position: chr14:10692167-10692340 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 27, 43

Conread position: 82-251
Cow position: chr14:28605316-28605143 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 134
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 24, 12

Conread position: 98-287
Cow position: chr14:21369432-21369238 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 155
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 35, 73

Conread position: 102-247
Cow position: chr14:45515514-45515660 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 106
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 35, 0

Conread position: 102-293
Cow position: chr14:19022834-19023034 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 144
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 31, 0

Conread position: 112-269
Cow position: chr14:6583051-6582888 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 118
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 21, 0

Conread position: 120-280
Cow position: chr14:26153223-26153392 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 128
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 13, 0

Conread position: 120-287
Cow position: chr14:8517943-8518113 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 137
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 11, 114

Conread position: 125-247
Cow position: chr14:37624732-37624855 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 101
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 12, 0

Conread position: 129-267
Cow position: chr14:10936313-10936172 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 115
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 68, 16

Conread position: 132-275
Cow position: chr14:10935676-10935823 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 119
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 65, 83

Conread position: 136-273
Cow position: chr14:18093826-18093957 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 107
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 7, 0

Conread position: 148-247
Cow position: chr14:6582855-6582756 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 83
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 148-278
Cow position: chr14:16969081-16969213 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 108
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 103, 55

Show alignments to all cow chromosomes.