Cow genome map

Conread name: rcmu12_j15.y1

Conread position: 1-157
Cow position: chr15:36671823-36671985 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 129
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 45, 98

Conread position: 1-166
Cow position: chr15:5527400-5527228 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 129
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 45, 109

Conread position: 1-167
Cow position: chr15:10615521-10615688 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 128
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 38, 94

Conread position: 1-174
Cow position: chr15:33770833-33770652 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 132
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 45, 0

Conread position: 1-199
Cow position: chr15:31157327-31157125 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 145
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 45, 108

Conread position: 1-206
Cow position: chr15:26701862-26702071 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 155
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 43, 21

Conread position: 1-232
Cow position: chr15:1830777-1830541 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 179
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 40, 94

Conread position: 1-232
Cow position: chr15:50993958-50993722 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 172
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 45, 93

Conread position: 1-237
Cow position: chr15:4857005-4856770 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 173
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 16, 99

Conread position: 1-237
Cow position: chr15:39363800-39364028 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 173
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 44, 89

Conread position: 1-237
Cow position: chr15:44209783-44209545 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 168
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 45, 125

Conread position: 1-239
Cow position: chr15:4277847-4278090 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 187
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 10, 100

Conread position: 1-241
Cow position: chr15:26673379-26673614 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 179
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 155, 16

Conread position: 1-244
Cow position: chr15:12163303-12163555 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 183
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 45, 18

Conread position: 1-245
Cow position: chr15:19279877-19280128 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 175
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 49, 66

Conread position: 1-247
Cow position: chr15:3572484-3572738 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 100

Conread position: 1-247
Cow position: chr15:11957757-11957501 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 198
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 45, 100

Conread position: 1-247
Cow position: chr15:28177679-28177415 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 188
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 90, 120

Conread position: 1-247
Cow position: chr15:31616791-31617045 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 180
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 31, 98

Conread position: 1-247
Cow position: chr15:40117241-40117487 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 176
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 17, 44

Conread position: 1-249
Cow position: chr15:9177994-9178243 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 199
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 44, 22

Conread position: 1-249
Cow position: chr15:26421383-26421639 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 98

Conread position: 1-249
Cow position: chr15:29272405-29272155 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 173
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 45, 112

Conread position: 1-249
Cow position: chr15:36658919-36659153 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 180
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 45, 84

Conread position: 1-255
Cow position: chr15:4373687-4373439 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 107

Conread position: 1-256
Cow position: chr15:30934335-30934591 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 188
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 40, 15

Conread position: 1-261
Cow position: chr15:37964755-37964480 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 200
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 40, 104

Conread position: 1-281
Cow position: chr15:43248555-43248848 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 203
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 39, 244

Conread position: 1-283
Cow position: chr15:21836906-21836609 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 227
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 41, 108

Conread position: 1-284
Cow position: chr15:15215236-15214936 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 222
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 45, 100

Conread position: 1-284
Cow position: chr15:24976978-24977254 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 38

Conread position: 1-284
Cow position: chr15:27863111-27863407 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 97

Conread position: 1-284
Cow position: chr15:34255531-34255799 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 207
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 45, 25

Conread position: 1-284
Cow position: chr15:42195053-42195342 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 95

Conread position: 1-284
Cow position: chr15:44252579-44252287 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 206
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 44, 103

Conread position: 1-287
Cow position: chr15:5722451-5722743 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 221
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 44, 133

Conread position: 1-287
Cow position: chr15:8937225-8936954 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 214
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 45, 84

Conread position: 1-287
Cow position: chr15:24285197-24284901 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 208
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 45, 101

Conread position: 1-287
Cow position: chr15:24411629-24411337 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 212
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 43, 16

Conread position: 1-287
Cow position: chr15:34036974-34037270 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 209
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 62, 15

Conread position: 1-287
Cow position: chr15:52982030-52981757 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 206
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 59, 15

Conread position: 1-288
Cow position: chr15:16825048-16824757 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 215
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 45, 146

Conread position: 1-288
Cow position: chr15:31599547-31599248 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 15

Conread position: 1-295
Cow position: chr15:31545136-31545441 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 212
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 42, 100

Conread position: 1-347
Cow position: chr15:36838964-36839295 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 25

Conread position: 2-221
Cow position: chr15:16585726-16585499 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 173
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 15, 101

Conread position: 2-235
Cow position: chr15:12673855-12673619 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 181
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 39, 50

Conread position: 2-237
Cow position: chr15:23957918-23957685 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 185
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 44, 99

Conread position: 2-240
Cow position: chr15:53118536-53118295 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 171
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 43, 27

Conread position: 2-244
Cow position: chr15:6491378-6491628 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 177
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 14, 96

Conread position: 2-245
Cow position: chr15:38323047-38322798 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 195
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 90, 47

Conread position: 2-281
Cow position: chr15:22854619-22854335 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 214
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 44, 99

Conread position: 4-240
Cow position: chr15:26734840-26734605 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 185
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 36, 96

Conread position: 4-247
Cow position: chr15:3571991-3571740 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 178
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 42, 6

Conread position: 4-275
Cow position: chr15:31907861-31907578 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 12

Conread position: 4-284
Cow position: chr15:22886764-22886477 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 219
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 13, 98

Conread position: 4-287
Cow position: chr15:23109093-23109367 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 213
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 125, 44

Conread position: 5-287
Cow position: chr15:8022261-8021972 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 107

Conread position: 7-237
Cow position: chr15:31182631-31182403 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 172
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 39, 11

Conread position: 9-210
Cow position: chr15:29900323-29900532 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 155
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 37, 92

Conread position: 9-245
Cow position: chr15:6749639-6749882 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 180
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 13, 58

Conread position: 10-241
Cow position: chr15:17213654-17213425 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 161
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 22, 79

Conread position: 10-284
Cow position: chr15:27247709-27247425 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 211
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 35, 115

Conread position: 11-287
Cow position: chr15:37918847-37918562 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 208
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 35, 14

Conread position: 13-312
Cow position: chr15:20482646-20482955 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 221
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 34, 82

Conread position: 19-249
Cow position: chr15:40498098-40498334 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 172
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 27, 76

Conread position: 19-281
Cow position: chr15:14758054-14758327 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 196
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 25, 82

Conread position: 22-204
Cow position: chr15:27732598-27732416 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 144
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 132, 17

Conread position: 22-247
Cow position: chr15:35967294-35967524 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 173
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 24, 73

Conread position: 23-249
Cow position: chr15:12036999-12036772 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 168
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 5, 14

Conread position: 26-249
Cow position: chr15:27748997-27749217 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 171
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 20, 34

Conread position: 29-288
Cow position: chr15:26933773-26934034 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 174
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 15, 51

Conread position: 48-281
Cow position: chr15:44879765-44879528 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 178
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 85, 48

Conread position: 54-287
Cow position: chr15:47821532-47821295 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 181
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 79, 40

Conread position: 76-251
Cow position: chr15:35283331-35283510 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 128
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 57, 20

Conread position: 76-272
Cow position: chr15:17788243-17788042 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 153
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 25, 34

Conread position: 81-235
Cow position: chr15:46005517-46005675 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 124
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 17, 0

Conread position: 82-287
Cow position: chr15:50561269-50561471 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 160
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 51, 14

Conread position: 97-287
Cow position: chr15:39200895-39200700 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 143
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 8, 27

Conread position: 101-238
Cow position: chr15:23140020-23140154 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 32, 113

Conread position: 117-287
Cow position: chr15:23547897-23548071 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 137
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 18, 152

Conread position: 120-261
Cow position: chr15:23224465-23224600 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 113
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 25, 88

Conread position: 122-249
Cow position: chr15:4216055-4216179 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 105
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 11, 72

Conread position: 131-292
Cow position: chr15:10189439-10189276 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 132
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 120, 5

Conread position: 132-239
Cow position: chr15:35663530-35663419 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 90
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 25, 0

Conread position: 132-249
Cow position: chr15:5527192-5527075 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 94
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 133-247
Cow position: chr15:39916769-39916653 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 92
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 21, 0

Conread position: 144-287
Cow position: chr15:51583103-51582959 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 113
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 117, 109

Conread position: 147-249
Cow position: chr15:14323355-14323456 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 89
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 78, 0

Show alignments to all cow chromosomes.