Cow genome map
| Conread name: | rcmu12_j15.y1 |
| Conread position: | 1-130 |
| Cow position: | chr16:4875867-4875999 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 40, 100 |
| Conread position: | 1-157 |
| Cow position: | chr16:27005075-27005237 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 43, 111 |
| Conread position: | 1-189 |
| Cow position: | chr16:17606169-17606368 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 74, 47 |
| Conread position: | 1-204 |
| Cow position: | chr16:9235602-9235396 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 58, 99 |
| Conread position: | 1-211 |
| Cow position: | chr16:13601202-13600989 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 49, 131 |
| Conread position: | 1-219 |
| Cow position: | chr16:25127088-25127302 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 9, 79 |
| Conread position: | 1-221 |
| Cow position: | chr16:12738206-12738418 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 108, 48 |
| Conread position: | 1-228 |
| Cow position: | chr16:4979682-4979912 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 180 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 132, 38 |
| Conread position: | 1-237 |
| Cow position: | chr16:18949474-18949712 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 40, 160 |
| Conread position: | 1-237 |
| Cow position: | chr16:52218954-52219189 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 45, 89 |
| Conread position: | 1-247 |
| Cow position: | chr16:689584-689832 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 129, 49 |
| Conread position: | 1-247 |
| Cow position: | chr16:13181614-13181867 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 45, 194 |
| Conread position: | 1-247 |
| Cow position: | chr16:19003203-19002963 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 129, 25 |
| Conread position: | 1-247 |
| Cow position: | chr16:21461902-21462152 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 16, 33 |
| Conread position: | 1-247 |
| Cow position: | chr16:22872494-22872252 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 28, 150 |
| Conread position: | 1-247 |
| Cow position: | chr16:38620835-38621084 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 45, 15 |
| Conread position: | 1-249 |
| Cow position: | chr16:10303875-10303620 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 158 |
| Conread position: | 1-249 |
| Cow position: | chr16:20260365-20260604 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 192 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 131, 51 |
| Conread position: | 1-249 |
| Cow position: | chr16:52222455-52222201 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 100 |
| Conread position: | 1-249 |
| Cow position: | chr16:54515597-54515849 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 16, 25 |
| Conread position: | 1-268 |
| Cow position: | chr16:4499308-4499578 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 202 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 41, 102 |
| Conread position: | 1-269 |
| Cow position: | chr16:15320593-15320328 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 202 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 16, 88 |
| Conread position: | 1-269 |
| Cow position: | chr16:55586727-55586455 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 95 |
| Conread position: | 1-279 |
| Cow position: | chr16:42257320-42257604 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 207 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 16, 102 |
| Conread position: | 1-281 |
| Cow position: | chr16:12072513-12072802 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 214 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 40, 114 |
| Conread position: | 1-282 |
| Cow position: | chr16:52577340-52577621 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 62, 18 |
| Conread position: | 1-284 |
| Cow position: | chr16:30639220-30639495 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 45, 18 |
| Conread position: | 1-287 |
| Cow position: | chr16:228612-228324 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 62, 27 |
| Conread position: | 1-287 |
| Cow position: | chr16:16056167-16055888 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 67, 18 |
| Conread position: | 1-287 |
| Cow position: | chr16:18427058-18427353 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 101 |
| Conread position: | 1-287 |
| Cow position: | chr16:45693018-45693316 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 226 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 40, 100 |
| Conread position: | 1-289 |
| Cow position: | chr16:31419315-31419622 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 223 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 44, 119 |
| Conread position: | 1-290 |
| Cow position: | chr16:26156262-26155966 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 6 |
| Conread position: | 1-295 |
| Cow position: | chr16:23025218-23025513 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 43, 86 |
| Conread position: | 2-235 |
| Cow position: | chr16:12169817-12169588 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 39, 62 |
| Conread position: | 2-235 |
| Cow position: | chr16:50014402-50014637 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 15, 99 |
| Conread position: | 2-247 |
| Cow position: | chr16:11085505-11085255 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 10, 95 |
| Conread position: | 2-247 |
| Cow position: | chr16:37719031-37719287 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 44, 113 |
| Conread position: | 2-261 |
| Cow position: | chr16:2308560-2308823 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 44, 92 |
| Conread position: | 2-281 |
| Cow position: | chr16:44260-44531 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 47, 32 |
| Conread position: | 2-281 |
| Cow position: | chr16:8704153-8704423 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 15, 99 |
| Conread position: | 2-284 |
| Cow position: | chr16:53267597-53267893 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 220 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 44, 117 |
| Conread position: | 2-287 |
| Cow position: | chr16:47368635-47368923 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 215 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 59, 15 |
| Conread position: | 2-290 |
| Cow position: | chr16:36930446-36930148 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 213 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 42, 132 |
| Conread position: | 2-307 |
| Cow position: | chr16:16545945-16546260 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 260 |
| Conread position: | 3-211 |
| Cow position: | chr16:41608486-41608700 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 27, 99 |
| Conread position: | 3-260 |
| Cow position: | chr16:11153316-11153048 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 202 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 43, 107 |
| Conread position: | 3-281 |
| Cow position: | chr16:13660360-13660067 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 40, 217 |
| Conread position: | 4-232 |
| Cow position: | chr16:20685564-20685346 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 42, 78 |
| Conread position: | 4-261 |
| Cow position: | chr16:28267136-28266885 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 208 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 41, 83 |
| Conread position: | 4-284 |
| Cow position: | chr16:26134492-26134203 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 37, 95 |
| Conread position: | 5-249 |
| Cow position: | chr16:32837671-32837418 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 5-287 |
| Cow position: | chr16:18557382-18557090 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 43, 92 |
| Conread position: | 10-199 |
| Cow position: | chr16:5789864-5789669 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 39, 109 |
| Conread position: | 10-287 |
| Cow position: | chr16:51070038-51069742 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 202 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 10, 137 |
| Conread position: | 14-281 |
| Cow position: | chr16:2619081-2618820 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 123, 53 |
| Conread position: | 15-284 |
| Cow position: | chr16:42312275-42312554 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 212 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 32, 83 |
| Conread position: | 15-287 |
| Cow position: | chr16:19976857-19977128 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 211 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 19, 91 |
| Conread position: | 29-245 |
| Cow position: | chr16:16946631-16946411 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 104, 65 |
| Conread position: | 31-280 |
| Cow position: | chr16:15938618-15938365 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 125, 63 |
| Conread position: | 31-288 |
| Cow position: | chr16:34210500-34210235 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 18, 159 |
| Conread position: | 34-247 |
| Cow position: | chr16:28827266-28827049 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 100, 60 |
| Conread position: | 48-249 |
| Cow position: | chr16:41711608-41711802 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 82, 40 |
| Conread position: | 49-237 |
| Cow position: | chr16:49580013-49580190 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 69, 43 |
| Conread position: | 49-281 |
| Cow position: | chr16:44898822-44898594 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 5 |
| Conread position: | 54-295 |
| Cow position: | chr16:11661967-11662212 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 186 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 79, 241 |
| Conread position: | 55-281 |
| Cow position: | chr16:43082301-43082074 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 27, 155 |
| Conread position: | 58-287 |
| Cow position: | chr16:28454354-28454127 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 48, 36 |
| Conread position: | 71-241 |
| Cow position: | chr16:56104964-56104791 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 59, 143 |
| Conread position: | 96-279 |
| Cow position: | chr16:47909371-47909182 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 37, 163 |
| Conread position: | 96-281 |
| Cow position: | chr16:53420316-53420504 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 11, 114 |
| Conread position: | 97-249 |
| Cow position: | chr16:23163603-23163445 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 123-275 |
| Cow position: | chr16:31490319-31490476 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 7, 83 |
| Conread position: | 132-269 |
| Cow position: | chr16:23978424-23978278 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 132-281 |
| Cow position: | chr16:9407865-9407711 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 132-287 |
| Cow position: | chr16:9510861-9510701 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 132-287 |
| Cow position: | chr16:25464069-25464223 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 117, 76 |
| Conread position: | 138-287 |
| Cow position: | chr16:31222557-31222709 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 113, 76 |
| Conread position: | 141-281 |
| Cow position: | chr16:10611603-10611466 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 11, 110 |
| Conread position: | 143-243 |
| Cow position: | chr16:13683475-13683375 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 82 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 145-275 |
| Cow position: | chr16:17617111-17616978 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 6, 70 |
| Conread position: | 147-288 |
| Cow position: | chr16:43762471-43762330 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 104, 64 |
Show alignments to all cow chromosomes.