Cow genome map
| Conread name: | rcmu12_j15.y1 |
| Conread position: | 1-197 |
| Cow position: | chr17:18824704-18824905 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 34, 102 |
| Conread position: | 1-203 |
| Cow position: | chr17:33999130-33998925 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 32, 18 |
| Conread position: | 1-231 |
| Cow position: | chr17:21260036-21259800 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 47, 102 |
| Conread position: | 1-235 |
| Cow position: | chr17:13672156-13671928 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 33, 102 |
| Conread position: | 1-236 |
| Cow position: | chr17:26084948-26085179 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 38, 97 |
| Conread position: | 1-237 |
| Cow position: | chr17:25740866-25741104 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 44, 102 |
| Conread position: | 1-237 |
| Cow position: | chr17:41034316-41034076 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 52, 164 |
| Conread position: | 1-244 |
| Cow position: | chr17:25707873-25708121 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 188 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 45, 15 |
| Conread position: | 1-247 |
| Cow position: | chr17:7614464-7614209 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 1-247 |
| Cow position: | chr17:8926302-8926049 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 39, 101 |
| Conread position: | 1-247 |
| Cow position: | chr17:21373594-21373842 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 45, 30 |
| Conread position: | 1-249 |
| Cow position: | chr17:18173891-18173661 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 132, 29 |
| Conread position: | 1-249 |
| Cow position: | chr17:28359759-28360005 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 45, 88 |
| Conread position: | 1-249 |
| Cow position: | chr17:37414982-37414730 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 94 |
| Conread position: | 1-249 |
| Cow position: | chr17:37778704-37778463 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 48, 85 |
| Conread position: | 1-251 |
| Cow position: | chr17:25181230-25180978 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 196 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 16, 108 |
| Conread position: | 1-260 |
| Cow position: | chr17:3042387-3042655 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 45, 211 |
| Conread position: | 1-280 |
| Cow position: | chr17:27257318-27257012 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 227 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 1-281 |
| Cow position: | chr17:35212280-35212563 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 45, 18 |
| Conread position: | 1-284 |
| Cow position: | chr17:36217263-36216976 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 33, 96 |
| Conread position: | 1-287 |
| Cow position: | chr17:8279795-8279502 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 43, 117 |
| Conread position: | 1-287 |
| Cow position: | chr17:10271409-10271696 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 8 |
| Conread position: | 1-287 |
| Cow position: | chr17:18245991-18246278 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 202 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 44, 94 |
| Conread position: | 1-287 |
| Cow position: | chr17:24880659-24880953 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 212 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 16, 111 |
| Conread position: | 1-287 |
| Cow position: | chr17:27819220-27819504 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 34, 125 |
| Conread position: | 1-302 |
| Cow position: | chr17:4140964-4140672 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 16, 57 |
| Conread position: | 1-306 |
| Cow position: | chr17:144265-143950 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 102 |
| Conread position: | 1-308 |
| Cow position: | chr17:33904008-33903692 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 48, 100 |
| Conread position: | 1-329 |
| Cow position: | chr17:15634963-15634632 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 44, 79 |
| Conread position: | 2-181 |
| Cow position: | chr17:25590320-25590136 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 44, 98 |
| Conread position: | 2-187 |
| Cow position: | chr17:25145405-25145220 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 43, 98 |
| Conread position: | 2-212 |
| Cow position: | chr17:21812230-21812018 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 44, 85 |
| Conread position: | 2-221 |
| Cow position: | chr17:27697786-27697560 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 43, 20 |
| Conread position: | 2-235 |
| Cow position: | chr17:10308114-10307877 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 45, 100 |
| Conread position: | 2-238 |
| Cow position: | chr17:25340239-25339999 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 14, 102 |
| Conread position: | 2-245 |
| Cow position: | chr17:11171711-11171953 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 40, 17 |
| Conread position: | 2-271 |
| Cow position: | chr17:39012637-39012915 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 214 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 14, 104 |
| Conread position: | 2-284 |
| Cow position: | chr17:40854785-40855066 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 222 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 40, 96 |
| Conread position: | 3-168 |
| Cow position: | chr17:3466748-3466913 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 42, 121 |
| Conread position: | 3-287 |
| Cow position: | chr17:26162511-26162213 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 37, 125 |
| Conread position: | 4-284 |
| Cow position: | chr17:20216086-20216377 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 215 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 42, 15 |
| Conread position: | 4-295 |
| Cow position: | chr17:11344134-11344424 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 205 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 33, 96 |
| Conread position: | 5-241 |
| Cow position: | chr17:34864490-34864730 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 184 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 14, 78 |
| Conread position: | 6-248 |
| Cow position: | chr17:33930100-33930328 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 11, 83 |
| Conread position: | 9-237 |
| Cow position: | chr17:5986145-5985914 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 10-281 |
| Cow position: | chr17:37138686-37138960 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 36, 87 |
| Conread position: | 10-287 |
| Cow position: | chr17:32457646-32457358 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 267 |
| Conread position: | 12-233 |
| Cow position: | chr17:10016026-10015797 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 35, 154 |
| Conread position: | 13-196 |
| Cow position: | chr17:41811744-41811926 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 33, 8 |
| Conread position: | 14-245 |
| Cow position: | chr17:18569000-18568771 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 116, 80 |
| Conread position: | 17-237 |
| Cow position: | chr17:24339113-24339326 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 29, 47 |
| Conread position: | 17-249 |
| Cow position: | chr17:21730359-21730126 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 29, 113 |
| Conread position: | 17-287 |
| Cow position: | chr17:8832187-8831930 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 201 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 87, 30 |
| Conread position: | 18-249 |
| Cow position: | chr17:7595097-7595320 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 27, 80 |
| Conread position: | 19-237 |
| Cow position: | chr17:9778597-9778802 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 44, 38 |
| Conread position: | 19-247 |
| Cow position: | chr17:6570208-6569977 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 23, 192 |
| Conread position: | 20-239 |
| Cow position: | chr17:9060200-9059989 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 39, 62 |
| Conread position: | 21-247 |
| Cow position: | chr17:4085689-4085923 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 183 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 25, 80 |
| Conread position: | 22-223 |
| Cow position: | chr17:8293841-8293636 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 110, 27 |
| Conread position: | 22-269 |
| Cow position: | chr17:30236150-30236388 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 24, 58 |
| Conread position: | 25-247 |
| Cow position: | chr17:4891417-4891194 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 108, 11 |
| Conread position: | 31-237 |
| Cow position: | chr17:5296908-5296699 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 31-281 |
| Cow position: | chr17:5360492-5360246 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 14, 66 |
| Conread position: | 36-284 |
| Cow position: | chr17:2270952-2271206 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 59, 75 |
| Conread position: | 39-249 |
| Cow position: | chr17:1455981-1455772 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 161 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 94, 113 |
| Conread position: | 39-298 |
| Cow position: | chr17:13716080-13715810 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 41-247 |
| Cow position: | chr17:9748705-9748912 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 89, 53 |
| Conread position: | 54-284 |
| Cow position: | chr17:33386387-33386631 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 32, 186 |
| Conread position: | 62-304 |
| Cow position: | chr17:26614751-26614503 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 41, 140 |
| Conread position: | 63-287 |
| Cow position: | chr17:38139488-38139721 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 41, 30 |
| Conread position: | 78-284 |
| Cow position: | chr17:13229373-13229587 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 33, 16 |
| Conread position: | 90-219 |
| Cow position: | chr17:33153969-33154100 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 97-253 |
| Cow position: | chr17:36173960-36173799 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 109-247 |
| Cow position: | chr17:23318291-23318153 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 25, 117 |
| Conread position: | 109-287 |
| Cow position: | chr17:15922867-15923050 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 24, 122 |
| Conread position: | 111-246 |
| Cow position: | chr17:34627818-34627683 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 22, 35 |
| Conread position: | 117-249 |
| Cow position: | chr17:8861112-8860986 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 13, 87 |
| Conread position: | 136-280 |
| Cow position: | chr17:11826400-11826251 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 138-262 |
| Cow position: | chr17:27781125-27781254 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 139-247 |
| Cow position: | chr17:23879466-23879358 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 87 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 145-281 |
| Cow position: | chr17:37043349-37043216 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 116, 63 |
| Conread position: | 145-288 |
| Cow position: | chr17:7861636-7861483 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 148-249 |
| Cow position: | chr17:8093916-8094016 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 85 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 94, 0 |
Show alignments to all cow chromosomes.