Cow genome map
| Conread name: | rcmu12_j15.y1 |
| Conread position: | 1-129 |
| Cow position: | chr18:35749136-35749007 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 52, 95 |
| Conread position: | 1-209 |
| Cow position: | chr18:19387422-19387629 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 45, 14 |
| Conread position: | 1-209 |
| Cow position: | chr18:51500233-51500018 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 62, 186 |
| Conread position: | 1-222 |
| Cow position: | chr18:23715047-23714813 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 43, 100 |
| Conread position: | 1-235 |
| Cow position: | chr18:37745645-37745884 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 14, 104 |
| Conread position: | 1-237 |
| Cow position: | chr18:17334575-17334336 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 41, 96 |
| Conread position: | 1-237 |
| Cow position: | chr18:23360473-23360714 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 25, 100 |
| Conread position: | 1-238 |
| Cow position: | chr18:21939196-21939439 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 50, 96 |
| Conread position: | 1-241 |
| Cow position: | chr18:23424766-23425007 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 46, 21 |
| Conread position: | 1-244 |
| Cow position: | chr18:6157763-6158005 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 46, 18 |
| Conread position: | 1-246 |
| Cow position: | chr18:34325115-34324861 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 189 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 10, 102 |
| Conread position: | 1-247 |
| Cow position: | chr18:16726488-16726743 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 29, 100 |
| Conread position: | 1-247 |
| Cow position: | chr18:38344646-38344899 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 36, 99 |
| Conread position: | 1-249 |
| Cow position: | chr18:10101334-10101584 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 96 |
| Conread position: | 1-249 |
| Cow position: | chr18:32773720-32773975 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 26, 98 |
| Conread position: | 1-273 |
| Cow position: | chr18:55697173-55696902 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 45 |
| Conread position: | 1-284 |
| Cow position: | chr18:16842225-16841915 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 29, 102 |
| Conread position: | 1-284 |
| Cow position: | chr18:35797465-35797747 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 107 |
| Conread position: | 1-284 |
| Cow position: | chr18:50700511-50700821 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 219 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 43, 230 |
| Conread position: | 1-287 |
| Cow position: | chr18:4040019-4040308 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 45, 100 |
| Conread position: | 1-287 |
| Cow position: | chr18:5755822-5756118 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 79 |
| Conread position: | 1-287 |
| Cow position: | chr18:19363772-19364072 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 143 |
| Conread position: | 1-287 |
| Cow position: | chr18:22411775-22411472 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 205 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 26, 100 |
| Conread position: | 1-287 |
| Cow position: | chr18:26334972-26334666 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 217 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 15, 99 |
| Conread position: | 1-287 |
| Cow position: | chr18:46321145-46320843 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 226 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 40, 105 |
| Conread position: | 1-292 |
| Cow position: | chr18:24364206-24363917 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 227 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 45, 100 |
| Conread position: | 1-292 |
| Cow position: | chr18:42060920-42061220 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 224 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 43, 25 |
| Conread position: | 1-295 |
| Cow position: | chr18:23487866-23488179 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 44, 100 |
| Conread position: | 2-237 |
| Cow position: | chr18:32517519-32517268 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 2-245 |
| Cow position: | chr18:51298319-51298572 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 15, 210 |
| Conread position: | 4-196 |
| Cow position: | chr18:36123381-36123578 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 43, 111 |
| Conread position: | 4-247 |
| Cow position: | chr18:25003037-25002795 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 40, 97 |
| Conread position: | 4-249 |
| Cow position: | chr18:33275154-33275386 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 42, 72 |
| Conread position: | 5-247 |
| Cow position: | chr18:25970786-25970547 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 42, 91 |
| Conread position: | 8-247 |
| Cow position: | chr18:32908899-32909142 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 6, 82 |
| Conread position: | 9-281 |
| Cow position: | chr18:29949617-29949878 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 13, 61 |
| Conread position: | 10-187 |
| Cow position: | chr18:50927616-50927789 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 18, 9 |
| Conread position: | 10-232 |
| Cow position: | chr18:3780296-3780512 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 46, 79 |
| Conread position: | 10-287 |
| Cow position: | chr18:44493615-44493346 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 37, 85 |
| Conread position: | 11-250 |
| Cow position: | chr18:21706330-21706086 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 18, 61 |
| Conread position: | 13-233 |
| Cow position: | chr18:18727700-18727489 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 40, 36 |
| Conread position: | 22-282 |
| Cow position: | chr18:43114071-43113819 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 84, 14 |
| Conread position: | 23-287 |
| Cow position: | chr18:51587673-51587408 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 83, 10 |
| Conread position: | 27-221 |
| Cow position: | chr18:38794017-38793818 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 19, 70 |
| Conread position: | 31-281 |
| Cow position: | chr18:15831718-15831469 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 17, 67 |
| Conread position: | 31-284 |
| Cow position: | chr18:33843203-33842948 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 15, 59 |
| Conread position: | 32-189 |
| Cow position: | chr18:14824900-14824740 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 48-284 |
| Cow position: | chr18:37331633-37331392 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 185 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 85, 46 |
| Conread position: | 48-287 |
| Cow position: | chr18:11362145-11362389 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 89, 57 |
| Conread position: | 48-287 |
| Cow position: | chr18:16448449-16448678 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 85, 46 |
| Conread position: | 49-341 |
| Cow position: | chr18:34006843-34007137 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 15, 46 |
| Conread position: | 54-227 |
| Cow position: | chr18:213640-213462 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 54-249 |
| Cow position: | chr18:20423075-20422882 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 80, 27 |
| Conread position: | 55-257 |
| Cow position: | chr18:36649855-36650049 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 63, 26 |
| Conread position: | 57-237 |
| Cow position: | chr18:7456042-7456212 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 80, 27 |
| Conread position: | 62-249 |
| Cow position: | chr18:33853159-33853342 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 62-287 |
| Cow position: | chr18:1190813-1190582 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 44, 24 |
| Conread position: | 75-247 |
| Cow position: | chr18:38126530-38126355 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 31, 19 |
| Conread position: | 84-282 |
| Cow position: | chr18:44400377-44400576 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 49, 168 |
| Conread position: | 98-275 |
| Cow position: | chr18:35767114-35767296 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 8, 19 |
| Conread position: | 100-247 |
| Cow position: | chr18:26372862-26373015 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 104-247 |
| Cow position: | chr18:48458626-48458769 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 7, 32 |
| Conread position: | 109-251 |
| Cow position: | chr18:30566603-30566461 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 24, 35 |
| Conread position: | 132-248 |
| Cow position: | chr18:39211034-39210918 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 94 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 133-246 |
| Cow position: | chr18:4624940-4624827 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 90 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 133-249 |
| Cow position: | chr18:24221551-24221667 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 95 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 146-249 |
| Cow position: | chr18:51412339-51412441 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 87 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 146-268 |
| Cow position: | chr18:21095110-21094984 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 146-334 |
| Cow position: | chr18:7409308-7409115 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 105, 122 |
| Conread position: | 147-288 |
| Cow position: | chr18:35607920-35608066 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 152-275 |
| Cow position: | chr18:28794837-28794964 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 97, 0 |
Show alignments to all cow chromosomes.