Cow genome map
| Conread name: | rcmu12_j15.y1 |
| Conread position: | 1-161 |
| Cow position: | chr19:28921685-28921853 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 1-178 |
| Cow position: | chr19:18788242-18788062 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 44, 97 |
| Conread position: | 1-193 |
| Cow position: | chr19:47479756-47479564 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 13, 99 |
| Conread position: | 1-203 |
| Cow position: | chr19:44489957-44490167 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 45, 100 |
| Conread position: | 1-208 |
| Cow position: | chr19:51536429-51536637 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 16, 99 |
| Conread position: | 1-211 |
| Cow position: | chr19:47109901-47110123 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 36, 99 |
| Conread position: | 1-214 |
| Cow position: | chr19:19924738-19924519 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 176 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 45, 114 |
| Conread position: | 1-217 |
| Cow position: | chr19:43733612-43733820 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 131, 78 |
| Conread position: | 1-235 |
| Cow position: | chr19:35782267-35782037 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 45, 21 |
| Conread position: | 1-236 |
| Cow position: | chr19:9703974-9703735 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 45, 20 |
| Conread position: | 1-237 |
| Cow position: | chr19:1402948-1402705 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 45, 140 |
| Conread position: | 1-237 |
| Cow position: | chr19:19673275-19673510 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 45, 100 |
| Conread position: | 1-237 |
| Cow position: | chr19:22863796-22863562 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 55, 98 |
| Conread position: | 1-237 |
| Cow position: | chr19:33260890-33261128 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 180 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 79, 50 |
| Conread position: | 1-247 |
| Cow position: | chr19:6881013-6880759 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 40, 100 |
| Conread position: | 1-247 |
| Cow position: | chr19:35064329-35064074 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 199 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 36, 98 |
| Conread position: | 1-248 |
| Cow position: | chr19:9100023-9100264 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 102, 47 |
| Conread position: | 1-249 |
| Cow position: | chr19:15936704-15936951 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 94 |
| Conread position: | 1-249 |
| Cow position: | chr19:24689147-24689400 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 45, 22 |
| Conread position: | 1-252 |
| Cow position: | chr19:15796528-15796776 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 45, 70 |
| Conread position: | 1-273 |
| Cow position: | chr19:36461665-36461380 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 95 |
| Conread position: | 1-274 |
| Cow position: | chr19:27346785-27346514 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 43, 105 |
| Conread position: | 1-274 |
| Cow position: | chr19:36977052-36976763 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 217 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 45, 133 |
| Conread position: | 1-280 |
| Cow position: | chr19:53738197-53738488 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 100 |
| Conread position: | 1-281 |
| Cow position: | chr19:1713281-1712985 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 44, 75 |
| Conread position: | 1-281 |
| Cow position: | chr19:21285216-21284925 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 96 |
| Conread position: | 1-287 |
| Cow position: | chr19:2342343-2342638 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 107 |
| Conread position: | 1-287 |
| Cow position: | chr19:2771151-2770856 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 217 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 39, 108 |
| Conread position: | 1-287 |
| Cow position: | chr19:5648790-5648510 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 198 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 43, 77 |
| Conread position: | 1-287 |
| Cow position: | chr19:25271554-25271257 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 102 |
| Conread position: | 1-287 |
| Cow position: | chr19:31381131-31380845 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 98 |
| Conread position: | 1-292 |
| Cow position: | chr19:55236352-55236652 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 144 |
| Conread position: | 1-295 |
| Cow position: | chr19:4825111-4824813 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 45, 96 |
| Conread position: | 1-299 |
| Cow position: | chr19:35344799-35345102 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 129, 28 |
| Conread position: | 2-199 |
| Cow position: | chr19:41212189-41211990 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 28, 102 |
| Conread position: | 2-233 |
| Cow position: | chr19:39876657-39876428 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 38, 89 |
| Conread position: | 2-241 |
| Cow position: | chr19:3124187-3123944 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 104, 48 |
| Conread position: | 2-245 |
| Cow position: | chr19:39250135-39250377 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 43, 73 |
| Conread position: | 2-276 |
| Cow position: | chr19:31826964-31827240 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 214 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 44, 14 |
| Conread position: | 2-281 |
| Cow position: | chr19:19661909-19662193 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 212 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 42, 19 |
| Conread position: | 3-237 |
| Cow position: | chr19:22168382-22168614 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 43, 98 |
| Conread position: | 3-241 |
| Cow position: | chr19:54225438-54225199 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 46, 92 |
| Conread position: | 3-249 |
| Cow position: | chr19:2821446-2821701 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 46, 96 |
| Conread position: | 3-301 |
| Cow position: | chr19:48478842-48479151 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 263 |
| Conread position: | 4-267 |
| Cow position: | chr19:7839176-7838912 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 201 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 59, 94 |
| Conread position: | 7-284 |
| Cow position: | chr19:43727009-43727291 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 208 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 42, 90 |
| Conread position: | 10-284 |
| Cow position: | chr19:7029792-7030076 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 205 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 13-288 |
| Cow position: | chr19:11637051-11636783 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 30, 7 |
| Conread position: | 14-287 |
| Cow position: | chr19:904857-905127 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 33, 145 |
| Conread position: | 19-209 |
| Cow position: | chr19:6815001-6814804 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 27, 81 |
| Conread position: | 20-247 |
| Cow position: | chr19:31126682-31126914 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 42, 19 |
| Conread position: | 23-247 |
| Cow position: | chr19:6735348-6735109 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 22, 91 |
| Conread position: | 26-287 |
| Cow position: | chr19:31614000-31614270 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 19, 53 |
| Conread position: | 36-210 |
| Cow position: | chr19:42504875-42504706 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 97, 51 |
| Conread position: | 36-284 |
| Cow position: | chr19:24721579-24721834 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 13, 59 |
| Conread position: | 38-224 |
| Cow position: | chr19:10207514-10207703 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 95, 56 |
| Conread position: | 48-237 |
| Cow position: | chr19:25711402-25711220 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 85, 46 |
| Conread position: | 48-281 |
| Cow position: | chr19:28842455-28842204 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 48-287 |
| Cow position: | chr19:952608-952850 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 85, 46 |
| Conread position: | 57-287 |
| Cow position: | chr19:12040547-12040780 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 70, 18 |
| Conread position: | 57-307 |
| Cow position: | chr19:31984727-31984467 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 76, 189 |
| Conread position: | 65-247 |
| Cow position: | chr19:38870997-38871185 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 6, 30 |
| Conread position: | 97-247 |
| Cow position: | chr19:30935811-30935658 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 9, 118 |
| Conread position: | 97-249 |
| Cow position: | chr19:21091059-21091213 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 100-275 |
| Cow position: | chr19:14254762-14254583 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 33, 11 |
| Conread position: | 101-248 |
| Cow position: | chr19:36318275-36318423 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 113-284 |
| Cow position: | chr19:2280662-2280488 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 20, 96 |
| Conread position: | 130-284 |
| Cow position: | chr19:18704467-18704624 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 24, 41 |
| Conread position: | 132-289 |
| Cow position: | chr19:38025690-38025856 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 24, 152 |
| Conread position: | 138-273 |
| Cow position: | chr19:39986340-39986194 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 139-245 |
| Cow position: | chr19:42765228-42765123 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 90 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 144-304 |
| Cow position: | chr19:11147608-11147444 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 107, 24 |
| Conread position: | 148-267 |
| Cow position: | chr19:42416435-42416317 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 148-281 |
| Cow position: | chr19:46306320-46306190 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 148-284 |
| Cow position: | chr19:25594181-25594315 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 103, 0 |
Show alignments to all cow chromosomes.