Cow genome map

Conread name: rcmu12_j15.y1

Conread position: 1-157
Cow position:
Alignm length: 165
Alignm identity: 123
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 45, 100

Conread position: 1-163
Cow position:
Alignm length: 168
Alignm identity: 122
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 121, 47

Conread position: 1-189
Cow position:
Alignm length: 200
Alignm identity: 147
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 43, 103

Conread position: 1-203
Cow position:
Alignm length: 214
Alignm identity: 163
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 41, 109

Conread position: 1-211
Cow position:
Alignm length: 220
Alignm identity: 159
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 45, 18

Conread position: 1-212
Cow position:
Alignm length: 220
Alignm identity: 160
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 45, 93

Conread position: 1-214
Cow position:
Alignm length: 228
Alignm identity: 166
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 29, 116

Conread position: 1-227
Cow position:
Alignm length: 230
Alignm identity: 165
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 45, 93

Conread position: 1-231
Cow position:
Alignm length: 241
Alignm identity: 175
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 16, 104

Conread position: 1-232
Cow position:
Alignm length: 241
Alignm identity: 174
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 45, 86

Conread position: 1-232
Cow position:
Alignm length: 234
Alignm identity: 170
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 45, 96

Conread position: 1-233
Cow position:
Alignm length: 242
Alignm identity: 170
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 12, 49

Conread position: 1-234
Cow position:
Alignm length: 242
Alignm identity: 170
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 15, 85

Conread position: 1-234
Cow position:
Alignm length: 245
Alignm identity: 175
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 50, 22

Conread position: 1-237
Cow position:
Alignm length: 241
Alignm identity: 176
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 46, 96

Conread position: 1-237
Cow position:
Alignm length: 245
Alignm identity: 170
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 40, 89

Conread position: 1-237
Cow position:
Alignm length: 247
Alignm identity: 185
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 43, 98

Conread position: 1-241
Cow position:
Alignm length: 254
Alignm identity: 191
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 45, 89

Conread position: 1-242
Cow position:
Alignm length: 254
Alignm identity: 175
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 45, 169

Conread position: 1-245
Cow position:
Alignm length: 250
Alignm identity: 172
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 136, 46

Conread position: 1-246
Cow position:
Alignm length: 256
Alignm identity: 175
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 55, 167

Conread position: 1-246
Cow position:
Alignm length: 258
Alignm identity: 187
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 43, 108

Conread position: 1-247
Cow position:
Alignm length: 255
Alignm identity: 193
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 45, 95

Conread position: 1-247
Cow position:
Alignm length: 260
Alignm identity: 180
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 45, 16

Conread position: 1-247
Cow position:
Alignm length: 257
Alignm identity: 176
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 51, 0

Conread position: 1-247
Cow position:
Alignm length: 251
Alignm identity: 172
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 158, 44

Conread position: 1-247
Cow position:
Alignm length: 256
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 100

Conread position: 1-247
Cow position:
Alignm length: 263
Alignm identity: 185
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 10, 104

Conread position: 1-248
Cow position:
Alignm length: 261
Alignm identity: 198
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 45, 18

Conread position: 1-249
Cow position:
Alignm length: 256
Alignm identity: 195
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 45, 18

Conread position: 1-249
Cow position:
Alignm length: 258
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 32

Conread position: 1-249
Cow position:
Alignm length: 257
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 191

Conread position: 1-257
Cow position:
Alignm length: 259
Alignm identity: 187
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 126, 16

Conread position: 1-272
Cow position:
Alignm length: 279
Alignm identity: 203
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 39, 18

Conread position: 1-276
Cow position:
Alignm length: 286
Alignm identity: 212
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 45, 102

Conread position: 1-280
Cow position:
Alignm length: 296
Alignm identity: 221
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 44, 74

Conread position: 1-280
Cow position:
Alignm length: 292
Alignm identity: 198
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 48, 83

Conread position: 1-281
Cow position:
Alignm length: 289
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 101

Conread position: 1-283
Cow position:
Alignm length: 308
Alignm identity: 220
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 45, 84

Conread position: 1-284
Cow position:
Alignm length: 298
Alignm identity: 211
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 48, 30

Conread position: 1-284
Cow position:
Alignm length: 293
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 1-284
Cow position:
Alignm length: 302
Alignm identity: 219
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 45, 28

Conread position: 1-284
Cow position:
Alignm length: 302
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 140

Conread position: 1-284
Cow position:
Alignm length: 294
Alignm identity: 215
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 48, 18

Conread position: 1-287
Cow position:
Alignm length: 307
Alignm identity: 211
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 43, 102

Conread position: 1-287
Cow position:
Alignm length: 306
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 21

Conread position: 1-287
Cow position:
Alignm length: 295
Alignm identity: 210
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 24, 113

Conread position: 1-287
Cow position:
Alignm length: 303
Alignm identity: 209
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 42, 191

Conread position: 1-287
Cow position:
Alignm length: 295
Alignm identity: 199
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 50, 63

Conread position: 1-287
Cow position:
Alignm length: 301
Alignm identity: 219
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 45, 94

Conread position: 1-287
Cow position:
Alignm length: 297
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 111

Conread position: 1-287
Cow position:
Alignm length: 305
Alignm identity: 218
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 40, 155

Conread position: 1-287
Cow position:
Alignm length: 315
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-173
Cow position:
Alignm length: 180
Alignm identity: 145
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 44, 98

Conread position: 2-206
Cow position:
Alignm length: 207
Alignm identity: 151
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 61, 17

Conread position: 2-232
Cow position:
Alignm length: 240
Alignm identity: 184
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 43, 99

Conread position: 2-234
Cow position:
Alignm length: 244
Alignm identity: 177
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 38, 25

Conread position: 2-237
Cow position:
Alignm length: 236
Alignm identity: 169
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 41, 0

Conread position: 2-237
Cow position:
Alignm length: 246
Alignm identity: 175
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 41, 93

Conread position: 2-246
Cow position:
Alignm length: 261
Alignm identity: 197
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 42, 254

Conread position: 2-248
Cow position:
Alignm length: 252
Alignm identity: 184
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 46, 75

Conread position: 2-249
Cow position:
Alignm length: 262
Alignm identity: 193
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 49, 106

Conread position: 2-278
Cow position:
Alignm length: 290
Alignm identity: 203
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 44, 0

Conread position: 2-281
Cow position:
Alignm length: 287
Alignm identity: 206
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 42, 78

Conread position: 2-284
Cow position:
Alignm length: 297
Alignm identity: 221
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 44, 15

Conread position: 2-316
Cow position:
Alignm length: 326
Alignm identity: 216
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 45, 101

Conread position: 3-232
Cow position:
Alignm length: 240
Alignm identity: 173
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 40, 97

Conread position: 3-242
Cow position:
Alignm length: 252
Alignm identity: 187
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 38, 16

Conread position: 3-269
Cow position:
Alignm length: 275
Alignm identity: 208
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 43, 86

Conread position: 4-237
Cow position:
Alignm length: 243
Alignm identity: 177
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 43, 17

Conread position: 4-245
Cow position:
Alignm length: 246
Alignm identity: 172
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 43, 27

Conread position: 5-245
Cow position:
Alignm length: 250
Alignm identity: 184
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 41, 29

Conread position: 5-247
Cow position:
Alignm length: 247
Alignm identity: 164
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 27, 14

Conread position: 5-262
Cow position:
Alignm length: 271
Alignm identity: 196
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 39, 0

Conread position: 5-273
Cow position:
Alignm length: 285
Alignm identity: 212
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 51, 94

Conread position: 5-287
Cow position:
Alignm length: 292
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 44

Conread position: 6-272
Cow position:
Alignm length: 286
Alignm identity: 213
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 36, 112

Conread position: 7-249
Cow position:
Alignm length: 249
Alignm identity: 177
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 9, 43

Conread position: 8-287
Cow position:
Alignm length: 285
Alignm identity: 200
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 38, 93

Conread position: 10-200
Cow position:
Alignm length: 205
Alignm identity: 153
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 35, 91

Conread position: 13-194
Cow position:
Alignm length: 190
Alignm identity: 137
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 33, 12

Conread position: 14-249
Cow position:
Alignm length: 237
Alignm identity: 164
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 120, 36

Conread position: 15-231
Cow position:
Alignm length: 225
Alignm identity: 161
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 26, 84

Conread position: 16-287
Cow position:
Alignm length: 285
Alignm identity: 213
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 84, 32

Conread position: 19-208
Cow position:
Alignm length: 194
Alignm identity: 136
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 32, 0

Conread position: 19-284
Cow position:
Alignm length: 272
Alignm identity: 189
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 37, 46

Conread position: 25-286
Cow position:
Alignm length: 272
Alignm identity: 186
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 22, 10

Conread position: 29-292
Cow position:
Alignm length: 276
Alignm identity: 202
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 18, 77

Conread position: 30-279
Cow position:
Alignm length: 257
Alignm identity: 192
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 15, 5

Conread position: 30-284
Cow position:
Alignm length: 266
Alignm identity: 195
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 15, 70

Conread position: 31-280
Cow position:
Alignm length: 256
Alignm identity: 177
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 16, 185

Conread position: 40-284
Cow position:
Alignm length: 254
Alignm identity: 177
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 9, 35

Conread position: 47-221
Cow position:
Alignm length: 180
Alignm identity: 126
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 86, 65

Conread position: 48-210
Cow position:
Alignm length: 165
Alignm identity: 129
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 58, 46

Conread position: 48-281
Cow position:
Alignm length: 240
Alignm identity: 169
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 85, 212

Conread position: 54-247
Cow position:
Alignm length: 200
Alignm identity: 152
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 35, 56

Conread position: 54-249
Cow position:
Alignm length: 210
Alignm identity: 150
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 43, 0

Conread position: 54-252
Cow position:
Alignm length: 203
Alignm identity: 141
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 52, 101

Conread position: 55-208
Cow position:
Alignm length: 155
Alignm identity: 114
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 77, 33

Conread position: 55-247
Cow position:
Alignm length: 199
Alignm identity: 158
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 50, 39

Conread position: 56-220
Cow position:
Alignm length: 171
Alignm identity: 130
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 51, 38

Conread position: 61-247
Cow position:
Alignm length: 189
Alignm identity: 146
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 40, 49

Conread position: 63-222
Cow position:
Alignm length: 161
Alignm identity: 122
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 70, 8

Conread position: 63-249
Cow position:
Alignm length: 191
Alignm identity: 147
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 42, 31

Conread position: 70-221
Cow position:
Alignm length: 155
Alignm identity: 117
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 35, 24

Conread position: 75-225
Cow position:
Alignm length: 154
Alignm identity: 122
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 34, 21

Conread position: 76-238
Cow position:
Alignm length: 164
Alignm identity: 119
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 59, 21

Conread position: 83-247
Cow position:
Alignm length: 167
Alignm identity: 133
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 22, 11

Conread position: 96-240
Cow position:
Alignm length: 146
Alignm identity: 108
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 37, 0

Conread position: 96-287
Cow position:
Alignm length: 198
Alignm identity: 138
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 8, 0

Conread position: 97-246
Cow position:
Alignm length: 155
Alignm identity: 118
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 36, 20

Conread position: 97-247
Cow position:
Alignm length: 156
Alignm identity: 114
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 7, 0

Conread position: 99-284
Cow position:
Alignm length: 190
Alignm identity: 142
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 34, 23

Conread position: 105-273
Cow position:
Alignm length: 175
Alignm identity: 136
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 28, 35

Conread position: 108-287
Cow position:
Alignm length: 186
Alignm identity: 143
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 25, 0

Conread position: 109-353
Cow position:
Alignm length: 249
Alignm identity: 175
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 25, 68

Conread position: 110-284
Cow position:
Alignm length: 186
Alignm identity: 141
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 7, 164

Conread position: 116-284
Cow position:
Alignm length: 179
Alignm identity: 135
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 14, 0

Conread position: 132-238
Cow position:
Alignm length: 107
Alignm identity: 91
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 136-249
Cow position:
Alignm length: 114
Alignm identity: 95
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 40, 0

Conread position: 145-287
Cow position:
Alignm length: 145
Alignm identity: 111
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 6, 81

Conread position: 146-256
Cow position:
Alignm length: 111
Alignm identity: 90
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 147-287
Cow position:
Alignm length: 146
Alignm identity: 113
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 104, 0

Conread position: 149-287
Cow position:
Alignm length: 146
Alignm identity: 112
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 102, 0

Show alignments to all cow chromosomes.