Cow genome map
| Conread name: | rcmu12_j15.y1 |
| Conread position: | 1-122 |
| Cow position: | chr20:15917898-15918027 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 1-203 |
| Cow position: | chr20:38123806-38124014 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 45, 15 |
| Conread position: | 1-211 |
| Cow position: | chr20:20471707-20471918 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 46, 18 |
| Conread position: | 1-226 |
| Cow position: | chr20:12676360-12676579 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 41, 61 |
| Conread position: | 1-233 |
| Cow position: | chr20:26077000-26077239 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 31, 96 |
| Conread position: | 1-238 |
| Cow position: | chr20:19339957-19339719 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 45, 100 |
| Conread position: | 1-242 |
| Cow position: | chr20:7182757-7182520 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 45, 90 |
| Conread position: | 1-247 |
| Cow position: | chr20:8261827-8262086 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 200 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 10, 243 |
| Conread position: | 1-247 |
| Cow position: | chr20:17670102-17670353 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 186 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 48, 95 |
| Conread position: | 1-247 |
| Cow position: | chr20:24834010-24834260 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 36, 80 |
| Conread position: | 1-247 |
| Cow position: | chr20:27001308-27001556 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 43, 14 |
| Conread position: | 1-247 |
| Cow position: | chr20:32862077-32861830 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 45, 24 |
| Conread position: | 1-247 |
| Cow position: | chr20:38858496-38858264 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 129, 60 |
| Conread position: | 1-257 |
| Cow position: | chr20:23834046-23834296 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 57, 111 |
| Conread position: | 1-261 |
| Cow position: | chr20:13494428-13494695 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 25, 102 |
| Conread position: | 1-267 |
| Cow position: | chr20:24234079-24234342 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 195 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 55, 48 |
| Conread position: | 1-273 |
| Cow position: | chr20:25823198-25823478 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 201 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 34, 88 |
| Conread position: | 1-273 |
| Cow position: | chr20:32667910-32668170 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 204 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 132, 45 |
| Conread position: | 1-284 |
| Cow position: | chr20:19266075-19266359 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 188 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 47, 112 |
| Conread position: | 1-284 |
| Cow position: | chr20:33178604-33178314 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 205 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 45, 240 |
| Conread position: | 1-287 |
| Cow position: | chr20:220537-220824 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 53 |
| Conread position: | 1-287 |
| Cow position: | chr20:10838300-10838000 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 44, 15 |
| Conread position: | 1-287 |
| Cow position: | chr20:13465429-13465721 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 48, 95 |
| Conread position: | 1-295 |
| Cow position: | chr20:1206017-1205715 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 40, 100 |
| Conread position: | 1-308 |
| Cow position: | chr20:23234951-23235268 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 100 |
| Conread position: | 1-352 |
| Cow position: | chr20:13821666-13821312 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 43, 186 |
| Conread position: | 2-233 |
| Cow position: | chr20:34178559-34178321 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 189 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 44, 103 |
| Conread position: | 3-235 |
| Cow position: | chr20:29308587-29308353 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 40, 78 |
| Conread position: | 4-157 |
| Cow position: | chr20:26315672-26315519 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 42, 50 |
| Conread position: | 5-223 |
| Cow position: | chr20:15073912-15073690 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 30, 92 |
| Conread position: | 5-285 |
| Cow position: | chr20:4204216-4204499 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 17, 91 |
| Conread position: | 5-287 |
| Cow position: | chr20:14679540-14679832 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 96 |
| Conread position: | 5-352 |
| Cow position: | chr20:5763364-5763014 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 240 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 96, 14 |
| Conread position: | 9-247 |
| Cow position: | chr20:20359857-20359611 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 23, 102 |
| Conread position: | 10-275 |
| Cow position: | chr20:39656174-39656446 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 206 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 39, 91 |
| Conread position: | 11-180 |
| Cow position: | chr20:2802166-2801991 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 33, 88 |
| Conread position: | 14-252 |
| Cow position: | chr20:25274359-25274117 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 32, 14 |
| Conread position: | 16-287 |
| Cow position: | chr20:7100707-7101001 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 28, 72 |
| Conread position: | 17-287 |
| Cow position: | chr20:17397325-17397049 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 82 |
| Conread position: | 17-298 |
| Cow position: | chr20:30855821-30855535 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 23, 10 |
| Conread position: | 21-232 |
| Cow position: | chr20:42254794-42255016 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 20, 81 |
| Conread position: | 22-245 |
| Cow position: | chr20:10759533-10759303 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 33-237 |
| Cow position: | chr20:7527078-7526879 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 14, 62 |
| Conread position: | 36-287 |
| Cow position: | chr20:6903272-6903528 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 94, 59 |
| Conread position: | 48-279 |
| Cow position: | chr20:19865223-19865455 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 46 |
| Conread position: | 48-287 |
| Cow position: | chr20:26750237-26749999 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 60, 42 |
| Conread position: | 54-211 |
| Cow position: | chr20:5576748-5576910 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 49, 40 |
| Conread position: | 54-249 |
| Cow position: | chr20:14363162-14362975 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 79, 60 |
| Conread position: | 91-249 |
| Cow position: | chr20:35924771-35924613 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 43, 118 |
| Conread position: | 94-287 |
| Cow position: | chr20:40355144-40355325 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 96-287 |
| Cow position: | chr20:7386573-7386766 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 10, 116 |
| Conread position: | 97-287 |
| Cow position: | chr20:13609049-13608855 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 38, 169 |
| Conread position: | 101-287 |
| Cow position: | chr20:2456052-2456241 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 32, 151 |
| Conread position: | 110-284 |
| Cow position: | chr20:25146811-25146990 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 23, 146 |
| Conread position: | 122-287 |
| Cow position: | chr20:33962783-33962945 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 11, 35 |
| Conread position: | 132-249 |
| Cow position: | chr20:35683350-35683233 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 137-247 |
| Cow position: | chr20:23604674-23604564 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 92 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 141-288 |
| Cow position: | chr20:3105079-3105232 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 152-287 |
| Cow position: | chr20:7873909-7873771 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 86, 0 |
Show alignments to all cow chromosomes.