Cow genome map
| Conread name: | rcmu12_j15.y1 |
| Conread position: | 1-154 |
| Cow position: | chr21:30150329-30150169 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 14, 84 |
| Conread position: | 1-168 |
| Cow position: | chr21:6621383-6621211 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 16, 99 |
| Conread position: | 1-187 |
| Cow position: | chr21:28993685-28993490 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 31, 100 |
| Conread position: | 1-197 |
| Cow position: | chr21:23499887-23499687 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 34, 18 |
| Conread position: | 1-210 |
| Cow position: | chr21:35062029-35062237 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 45, 21 |
| Conread position: | 1-229 |
| Cow position: | chr21:41583207-41583443 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 15, 169 |
| Conread position: | 1-232 |
| Cow position: | chr21:42053331-42053103 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 16, 101 |
| Conread position: | 1-240 |
| Cow position: | chr21:47823338-47823084 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 48, 101 |
| Conread position: | 1-245 |
| Cow position: | chr21:4276651-4276414 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 45, 28 |
| Conread position: | 1-247 |
| Cow position: | chr21:4098806-4099061 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 43, 103 |
| Conread position: | 1-247 |
| Cow position: | chr21:25286450-25286705 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 45, 217 |
| Conread position: | 1-249 |
| Cow position: | chr21:23785966-23786224 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 43, 110 |
| Conread position: | 1-249 |
| Cow position: | chr21:31576447-31576685 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 189 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 132, 16 |
| Conread position: | 1-273 |
| Cow position: | chr21:35997110-35997394 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 107 |
| Conread position: | 1-281 |
| Cow position: | chr21:34739783-34740075 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 44, 15 |
| Conread position: | 1-281 |
| Cow position: | chr21:44754836-44754559 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 49, 18 |
| Conread position: | 1-281 |
| Cow position: | chr21:47715607-47715315 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 213 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 45, 86 |
| Conread position: | 1-283 |
| Cow position: | chr21:45923707-45923431 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 204 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 45, 16 |
| Conread position: | 1-284 |
| Cow position: | chr21:9353381-9353681 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 45, 18 |
| Conread position: | 1-284 |
| Cow position: | chr21:12087530-12087829 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 223 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 46, 64 |
| Conread position: | 1-287 |
| Cow position: | chr21:23397908-23397616 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 222 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 45, 18 |
| Conread position: | 1-287 |
| Cow position: | chr21:41514741-41515030 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 218 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 45, 9 |
| Conread position: | 1-287 |
| Cow position: | chr21:48291104-48290822 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 214 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 132, 27 |
| Conread position: | 1-348 |
| Cow position: | chr21:28997965-28997603 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 257 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 16, 100 |
| Conread position: | 1-353 |
| Cow position: | chr21:18941893-18941537 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 17, 65 |
| Conread position: | 2-231 |
| Cow position: | chr21:49649572-49649804 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 15, 173 |
| Conread position: | 2-247 |
| Cow position: | chr21:34565271-34565023 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 30, 95 |
| Conread position: | 2-248 |
| Cow position: | chr21:31200111-31200351 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 44, 98 |
| Conread position: | 2-284 |
| Cow position: | chr21:31661943-31662232 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 218 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 43, 95 |
| Conread position: | 2-344 |
| Cow position: | chr21:21181114-21181468 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 44, 112 |
| Conread position: | 3-247 |
| Cow position: | chr21:23801189-23800937 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 39, 97 |
| Conread position: | 3-284 |
| Cow position: | chr21:4723421-4723714 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 21, 49 |
| Conread position: | 4-249 |
| Cow position: | chr21:6058699-6058454 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 42, 87 |
| Conread position: | 5-249 |
| Cow position: | chr21:31004718-31004482 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 58, 16 |
| Conread position: | 5-249 |
| Cow position: | chr21:33947310-33947060 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 9-248 |
| Cow position: | chr21:6316158-6316405 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 38, 225 |
| Conread position: | 11-249 |
| Cow position: | chr21:8184235-8184482 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 18, 26 |
| Conread position: | 12-273 |
| Cow position: | chr21:21140473-21140726 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 195 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 34, 72 |
| Conread position: | 13-287 |
| Cow position: | chr21:11676100-11675817 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 84 |
| Conread position: | 14-292 |
| Cow position: | chr21:15239238-15239519 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 209 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 35, 62 |
| Conread position: | 17-293 |
| Cow position: | chr21:36371435-36371724 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 31, 85 |
| Conread position: | 23-247 |
| Cow position: | chr21:24698438-24698672 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 181 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 29-247 |
| Cow position: | chr21:15742127-15741893 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 20, 90 |
| Conread position: | 30-212 |
| Cow position: | chr21:8420591-8420781 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 16, 68 |
| Conread position: | 33-238 |
| Cow position: | chr21:1885816-1885608 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 48, 16 |
| Conread position: | 36-241 |
| Cow position: | chr21:11019361-11019578 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 70, 59 |
| Conread position: | 36-315 |
| Cow position: | chr21:39509413-39509127 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 9, 54 |
| Conread position: | 48-230 |
| Cow position: | chr21:37845771-37845588 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 138 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 57, 24 |
| Conread position: | 48-346 |
| Cow position: | chr21:37718454-37718162 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 220 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 203, 57 |
| Conread position: | 60-251 |
| Cow position: | chr21:13256497-13256318 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 70, 33 |
| Conread position: | 95-254 |
| Cow position: | chr21:37848258-37848422 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 19, 9 |
| Conread position: | 96-287 |
| Cow position: | chr21:8671431-8671627 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 10, 152 |
| Conread position: | 102-245 |
| Cow position: | chr21:13418189-13418045 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 108-284 |
| Cow position: | chr21:8282323-8282496 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 145, 15 |
| Conread position: | 110-287 |
| Cow position: | chr21:27480498-27480680 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 23, 42 |
| Conread position: | 111-287 |
| Cow position: | chr21:24674770-24674952 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 115-281 |
| Cow position: | chr21:30150180-30150013 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 136, 25 |
| Conread position: | 124-281 |
| Cow position: | chr21:37121142-37120982 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 127, 27 |
| Conread position: | 124-295 |
| Cow position: | chr21:17807070-17806894 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 9, 145 |
| Conread position: | 132-241 |
| Cow position: | chr21:9588302-9588409 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 91 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 132-273 |
| Cow position: | chr21:18782310-18782453 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 119, 97 |
| Conread position: | 137-287 |
| Cow position: | chr21:7186880-7187023 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 145-295 |
| Cow position: | chr21:30053332-30053177 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 25, 75 |
| Conread position: | 150-281 |
| Cow position: | chr21:23974181-23974046 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 99, 80 |
Show alignments to all cow chromosomes.