Cow genome map
| Conread name: | rcmu12_j15.y1 |
| Conread position: | 1-185 |
| Cow position: | chr22:15666080-15666270 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 44, 100 |
| Conread position: | 1-194 |
| Cow position: | chr22:26264361-26264157 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 16, 101 |
| Conread position: | 1-202 |
| Cow position: | chr22:15928774-15928571 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 45, 15 |
| Conread position: | 1-203 |
| Cow position: | chr22:11257865-11257667 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 132, 28 |
| Conread position: | 1-211 |
| Cow position: | chr22:26376141-26376354 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 45, 34 |
| Conread position: | 1-234 |
| Cow position: | chr22:10683791-10683567 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 45, 63 |
| Conread position: | 1-235 |
| Cow position: | chr22:19592288-19592531 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 16, 104 |
| Conread position: | 1-235 |
| Cow position: | chr22:24185540-24185309 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 45, 25 |
| Conread position: | 1-237 |
| Cow position: | chr22:2476341-2476098 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 1-237 |
| Cow position: | chr22:7979577-7979807 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 48, 114 |
| Conread position: | 1-237 |
| Cow position: | chr22:25311672-25311447 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 1-241 |
| Cow position: | chr22:7301969-7301721 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 15, 96 |
| Conread position: | 1-241 |
| Cow position: | chr22:39293875-39293625 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 43, 95 |
| Conread position: | 1-247 |
| Cow position: | chr22:2913148-2913401 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 46, 172 |
| Conread position: | 1-247 |
| Cow position: | chr22:13187750-13188007 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 45, 98 |
| Conread position: | 1-247 |
| Cow position: | chr22:33386634-33386385 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 31, 96 |
| Conread position: | 1-249 |
| Cow position: | chr22:14118848-14119103 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 197 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 40, 109 |
| Conread position: | 1-249 |
| Cow position: | chr22:22997348-22997603 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 106 |
| Conread position: | 1-260 |
| Cow position: | chr22:26081024-26080768 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 44, 93 |
| Conread position: | 1-281 |
| Cow position: | chr22:44835515-44835818 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 16, 101 |
| Conread position: | 1-284 |
| Cow position: | chr22:15358113-15358412 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 224 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 10, 81 |
| Conread position: | 1-284 |
| Cow position: | chr22:23010068-23009777 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 44, 21 |
| Conread position: | 1-284 |
| Cow position: | chr22:23580966-23580679 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 216 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 48, 86 |
| Conread position: | 1-287 |
| Cow position: | chr22:19040496-19040199 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 158 |
| Conread position: | 1-287 |
| Cow position: | chr22:19738704-19738419 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 16, 95 |
| Conread position: | 1-298 |
| Cow position: | chr22:13235408-13235691 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 205 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 45, 86 |
| Conread position: | 1-304 |
| Cow position: | chr22:5622848-5622538 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 36, 100 |
| Conread position: | 1-307 |
| Cow position: | chr22:27223999-27224316 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 26, 96 |
| Conread position: | 1-308 |
| Cow position: | chr22:13057828-13057516 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 232 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 15, 101 |
| Conread position: | 1-314 |
| Cow position: | chr22:32221513-32221833 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 97 |
| Conread position: | 1-344 |
| Cow position: | chr22:19653115-19652744 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 249 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 38, 121 |
| Conread position: | 2-235 |
| Cow position: | chr22:33201361-33201594 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 27, 106 |
| Conread position: | 2-247 |
| Cow position: | chr22:4651052-4651302 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 42, 17 |
| Conread position: | 2-247 |
| Cow position: | chr22:15398707-15398453 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 198 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 43, 88 |
| Conread position: | 2-314 |
| Cow position: | chr22:9466480-9466804 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 115 |
| Conread position: | 3-204 |
| Cow position: | chr22:41684413-41684205 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 50, 95 |
| Conread position: | 3-247 |
| Cow position: | chr22:11778739-11778488 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 180 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 43, 113 |
| Conread position: | 3-255 |
| Cow position: | chr22:7518292-7518551 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 44, 13 |
| Conread position: | 3-281 |
| Cow position: | chr22:19207848-19208125 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 42, 73 |
| Conread position: | 4-232 |
| Cow position: | chr22:45931040-45931268 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 129, 15 |
| Conread position: | 4-237 |
| Cow position: | chr22:4161736-4161506 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 24, 91 |
| Conread position: | 4-246 |
| Cow position: | chr22:12535891-12535659 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 126, 31 |
| Conread position: | 4-247 |
| Cow position: | chr22:26941670-26941914 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 181 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 49, 15 |
| Conread position: | 4-248 |
| Cow position: | chr22:23861275-23861030 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 197 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 37, 12 |
| Conread position: | 4-287 |
| Cow position: | chr22:139431-139143 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 214 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 10, 100 |
| Conread position: | 8-281 |
| Cow position: | chr22:45355263-45355540 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 17, 27 |
| Conread position: | 9-284 |
| Cow position: | chr22:43262335-43262614 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 90 |
| Conread position: | 10-287 |
| Cow position: | chr22:41388993-41389276 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 96, 39 |
| Conread position: | 11-207 |
| Cow position: | chr22:24072011-24071808 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 35, 101 |
| Conread position: | 12-210 |
| Cow position: | chr22:35382367-35382166 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 34, 128 |
| Conread position: | 12-284 |
| Cow position: | chr22:25714889-25715171 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 206 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 44, 10 |
| Conread position: | 13-281 |
| Cow position: | chr22:44924179-44923894 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 33, 88 |
| Conread position: | 14-245 |
| Cow position: | chr22:26057261-26057502 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 32, 68 |
| Conread position: | 14-248 |
| Cow position: | chr22:13274370-13274606 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 25, 17 |
| Conread position: | 18-287 |
| Cow position: | chr22:17780835-17780561 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 58 |
| Conread position: | 19-287 |
| Cow position: | chr22:18487028-18486760 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 202 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 115, 14 |
| Conread position: | 23-297 |
| Cow position: | chr22:26760606-26760881 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 5, 195 |
| Conread position: | 26-249 |
| Cow position: | chr22:10649883-10649654 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 172 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 30-292 |
| Cow position: | chr22:22210338-22210069 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 75, 9 |
| Conread position: | 31-287 |
| Cow position: | chr22:5928057-5927795 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 16, 68 |
| Conread position: | 36-296 |
| Cow position: | chr22:26763943-26764208 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 70, 58 |
| Conread position: | 39-287 |
| Cow position: | chr22:34675435-34675689 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 48-237 |
| Cow position: | chr22:39601333-39601515 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 86-287 |
| Cow position: | chr22:22999553-22999761 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 44, 18 |
| Conread position: | 88-273 |
| Cow position: | chr22:31192612-31192422 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 45, 90 |
| Conread position: | 90-249 |
| Cow position: | chr22:29868644-29868483 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 96-240 |
| Cow position: | chr22:21650138-21650285 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 116-287 |
| Cow position: | chr22:32053367-32053543 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 6, 18 |
| Conread position: | 117-256 |
| Cow position: | chr22:23037757-23037620 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 16, 114 |
| Conread position: | 117-273 |
| Cow position: | chr22:6859240-6859081 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 16, 31 |
| Conread position: | 123-284 |
| Cow position: | chr22:32690439-32690274 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 10, 29 |
| Conread position: | 138-287 |
| Cow position: | chr22:23751165-23751011 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 145-282 |
| Cow position: | chr22:17074393-17074529 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 116, 10 |
| Conread position: | 147-249 |
| Cow position: | chr22:2135800-2135899 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 90 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 157-279 |
| Cow position: | chr22:33768163-33768284 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 100 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 118, 0 |
Show alignments to all cow chromosomes.