Cow genome map
| Conread name: | rcmu12_j15.y1 |
| Conread position: | 1-223 |
| Cow position: | chr24:39350364-39350136 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 48, 137 |
| Conread position: | 1-236 |
| Cow position: | chr24:29041886-29042113 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 40, 94 |
| Conread position: | 1-236 |
| Cow position: | chr24:32086072-32085838 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 184 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 131, 25 |
| Conread position: | 1-244 |
| Cow position: | chr24:14617503-14617760 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 43, 117 |
| Conread position: | 1-247 |
| Cow position: | chr24:28279491-28279728 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 45, 75 |
| Conread position: | 1-248 |
| Cow position: | chr24:19611858-19612111 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 100 |
| Conread position: | 1-249 |
| Cow position: | chr24:1272014-1271784 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 131, 36 |
| Conread position: | 1-278 |
| Cow position: | chr24:28349432-28349712 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 31, 73 |
| Conread position: | 1-281 |
| Cow position: | chr24:30860485-30860776 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 213 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 44, 100 |
| Conread position: | 1-281 |
| Cow position: | chr24:31258489-31258198 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 113 |
| Conread position: | 1-281 |
| Cow position: | chr24:36801232-36801518 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 218 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 45, 18 |
| Conread position: | 1-284 |
| Cow position: | chr24:26455688-26455986 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 215 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 43, 100 |
| Conread position: | 1-285 |
| Cow position: | chr24:40809510-40809221 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 98 |
| Conread position: | 1-286 |
| Cow position: | chr24:25677886-25678171 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 43, 99 |
| Conread position: | 1-287 |
| Cow position: | chr24:7079639-7079931 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 198 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 26, 115 |
| Conread position: | 1-287 |
| Cow position: | chr24:17981046-17981333 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 210 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 132, 18 |
| Conread position: | 1-287 |
| Cow position: | chr24:18787071-18786781 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 100 |
| Conread position: | 1-287 |
| Cow position: | chr24:24311353-24311650 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 115 |
| Conread position: | 1-287 |
| Cow position: | chr24:27054256-27054555 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 43, 100 |
| Conread position: | 1-287 |
| Cow position: | chr24:31378609-31378896 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 95 |
| Conread position: | 1-287 |
| Cow position: | chr24:32158423-32158127 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 96 |
| Conread position: | 1-287 |
| Cow position: | chr24:40091725-40091438 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 42, 15 |
| Conread position: | 1-290 |
| Cow position: | chr24:34369155-34368860 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 32, 96 |
| Conread position: | 1-292 |
| Cow position: | chr24:32758911-32758608 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 172 |
| Conread position: | 1-294 |
| Cow position: | chr24:6507915-6507614 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 15 |
| Conread position: | 1-347 |
| Cow position: | chr24:11201798-11201441 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 124 |
| Conread position: | 2-247 |
| Cow position: | chr24:5849548-5849273 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 2-247 |
| Cow position: | chr24:35827591-35827840 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 186 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 48, 17 |
| Conread position: | 2-261 |
| Cow position: | chr24:39681705-39681972 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 204 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 40, 17 |
| Conread position: | 2-287 |
| Cow position: | chr24:35569034-35569320 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 216 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 44, 24 |
| Conread position: | 2-301 |
| Cow position: | chr24:6061549-6061219 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 239 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 13, 81 |
| Conread position: | 2-315 |
| Cow position: | chr24:27633261-27633578 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 94 |
| Conread position: | 3-223 |
| Cow position: | chr24:35529774-35529987 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 43, 13 |
| Conread position: | 7-247 |
| Cow position: | chr24:39742682-39742918 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 37, 64 |
| Conread position: | 9-221 |
| Cow position: | chr24:27683582-27683379 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 123, 72 |
| Conread position: | 10-290 |
| Cow position: | chr24:42943252-42942972 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 123, 9 |
| Conread position: | 11-204 |
| Cow position: | chr24:18393661-18393463 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 19, 7 |
| Conread position: | 14-211 |
| Cow position: | chr24:32894261-32894459 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 32, 84 |
| Conread position: | 14-251 |
| Cow position: | chr24:41963233-41962993 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 184 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 32, 96 |
| Conread position: | 16-160 |
| Cow position: | chr24:7401355-7401204 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 21-275 |
| Cow position: | chr24:28335678-28335427 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 187 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 112, 32 |
| Conread position: | 36-287 |
| Cow position: | chr24:23824536-23824285 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 11, 60 |
| Conread position: | 41-249 |
| Cow position: | chr24:19754469-19754677 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 164 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 65, 53 |
| Conread position: | 47-248 |
| Cow position: | chr24:42681641-42681832 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 86, 22 |
| Conread position: | 54-221 |
| Cow position: | chr24:18567609-18567441 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 55, 70 |
| Conread position: | 54-222 |
| Cow position: | chr24:24495931-24495762 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 56-256 |
| Cow position: | chr24:11456929-11456728 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 74, 41 |
| Conread position: | 97-234 |
| Cow position: | chr24:10546021-10546160 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 108-287 |
| Cow position: | chr24:21041977-21041796 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 25, 101 |
| Conread position: | 126-211 |
| Cow position: | chr24:27154186-27154101 (view UCSC Genome Browser custom track) |
| Alignm length: | 86 |
| Alignm identity: | 77 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 132-275 |
| Cow position: | chr24:10837879-10838021 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 131, 79 |
| Conread position: | 132-287 |
| Cow position: | chr24:16481318-16481166 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 116, 66 |
| Conread position: | 133-287 |
| Cow position: | chr24:36497746-36497588 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 118, 38 |
| Conread position: | 141-287 |
| Cow position: | chr24:41332586-41332435 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 145-281 |
| Cow position: | chr24:32059456-32059316 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 8, 82 |
Show alignments to all cow chromosomes.