Cow genome map
| Conread name: | rcmu12_j15.y1 |
| Conread position: | 1-175 |
| Cow position: | chr25:36644081-36643907 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 50, 97 |
| Conread position: | 1-206 |
| Cow position: | chr25:9519196-9519404 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 102, 93 |
| Conread position: | 1-210 |
| Cow position: | chr25:12234887-12234687 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 48, 96 |
| Conread position: | 1-222 |
| Cow position: | chr25:16560306-16560073 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 16, 208 |
| Conread position: | 1-232 |
| Cow position: | chr25:5972342-5972568 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 45, 57 |
| Conread position: | 1-237 |
| Cow position: | chr25:16007664-16007896 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 45, 53 |
| Conread position: | 1-237 |
| Cow position: | chr25:32606451-32606210 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 45, 87 |
| Conread position: | 1-238 |
| Cow position: | chr25:11989643-11989397 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 34, 104 |
| Conread position: | 1-240 |
| Cow position: | chr25:18161161-18161401 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 31, 18 |
| Conread position: | 1-247 |
| Cow position: | chr25:10012177-10011935 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 40, 102 |
| Conread position: | 1-247 |
| Cow position: | chr25:10748632-10748375 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 92, 9 |
| Conread position: | 1-247 |
| Cow position: | chr25:14570242-14570497 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 43, 100 |
| Conread position: | 1-248 |
| Cow position: | chr25:22909973-22909734 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 191 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 129, 47 |
| Conread position: | 1-249 |
| Cow position: | chr25:16691534-16691784 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 198 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 40, 100 |
| Conread position: | 1-261 |
| Cow position: | chr25:33112097-33111836 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 85 |
| Conread position: | 1-281 |
| Cow position: | chr25:26457813-26457513 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 216 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 1-282 |
| Cow position: | chr25:36501367-36501080 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 27, 113 |
| Conread position: | 1-284 |
| Cow position: | chr25:18000654-18000364 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 46, 87 |
| Conread position: | 1-285 |
| Cow position: | chr25:8512220-8511924 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 113 |
| Conread position: | 1-287 |
| Cow position: | chr25:22575646-22575359 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 31, 96 |
| Conread position: | 1-287 |
| Cow position: | chr25:23410534-23410829 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 100 |
| Conread position: | 1-292 |
| Cow position: | chr25:14467211-14466924 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 217 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 20, 100 |
| Conread position: | 1-350 |
| Cow position: | chr25:40957117-40956755 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 43, 216 |
| Conread position: | 2-201 |
| Cow position: | chr25:22735995-22736194 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 104, 24 |
| Conread position: | 2-281 |
| Cow position: | chr25:20625054-20624773 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 14 |
| Conread position: | 2-284 |
| Cow position: | chr25:24405864-24405566 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 220 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 42, 97 |
| Conread position: | 2-284 |
| Cow position: | chr25:33245803-33246080 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 92, 38 |
| Conread position: | 2-298 |
| Cow position: | chr25:4716147-4716438 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 99, 46 |
| Conread position: | 3-287 |
| Cow position: | chr25:8576566-8576863 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 41, 92 |
| Conread position: | 4-237 |
| Cow position: | chr25:33411132-33411373 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 38, 12 |
| Conread position: | 5-248 |
| Cow position: | chr25:22542919-22542686 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 9, 26 |
| Conread position: | 5-287 |
| Cow position: | chr25:24136561-24136275 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 41, 92 |
| Conread position: | 6-247 |
| Cow position: | chr25:26240418-26240664 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 41, 106 |
| Conread position: | 10-234 |
| Cow position: | chr25:13560325-13560100 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 120, 39 |
| Conread position: | 14-247 |
| Cow position: | chr25:27535030-27534793 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 35, 96 |
| Conread position: | 14-261 |
| Cow position: | chr25:34970347-34970604 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 195 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 26, 87 |
| Conread position: | 15-247 |
| Cow position: | chr25:14075187-14075428 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 28, 67 |
| Conread position: | 31-211 |
| Cow position: | chr25:13727479-13727298 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 15, 25 |
| Conread position: | 40-288 |
| Cow position: | chr25:8080638-8080896 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 9, 131 |
| Conread position: | 48-274 |
| Cow position: | chr25:20811447-20811218 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 85, 58 |
| Conread position: | 59-236 |
| Cow position: | chr25:15358426-15358253 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 65-247 |
| Cow position: | chr25:18239448-18239634 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 99-266 |
| Cow position: | chr25:30021045-30021219 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 144-287 |
| Cow position: | chr25:10204646-10204498 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 163-287 |
| Cow position: | chr25:40845613-40845736 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 91, 0 |
Show alignments to all cow chromosomes.