Cow genome map
| Conread name: | rcmu12_j15.y1 |
| Conread position: | 1-172 |
| Cow position: | chr26:33745807-33745986 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 45, 96 |
| Conread position: | 1-205 |
| Cow position: | chr26:20129781-20129574 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 44, 98 |
| Conread position: | 1-235 |
| Cow position: | chr26:4747967-4747728 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-237 |
| Cow position: | chr26:19178508-19178735 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 46, 80 |
| Conread position: | 1-237 |
| Cow position: | chr26:23272674-23272908 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 44, 111 |
| Conread position: | 1-248 |
| Cow position: | chr26:3019534-3019272 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 194 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-249 |
| Cow position: | chr26:29353617-29353362 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 45, 107 |
| Conread position: | 1-253 |
| Cow position: | chr26:14905921-14905656 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 29, 25 |
| Conread position: | 1-262 |
| Cow position: | chr26:30605471-30605210 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 45, 163 |
| Conread position: | 1-280 |
| Cow position: | chr26:14924373-14924664 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 99 |
| Conread position: | 1-281 |
| Cow position: | chr26:12519908-12520211 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-284 |
| Cow position: | chr26:14080605-14080889 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 218 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 44, 15 |
| Conread position: | 1-287 |
| Cow position: | chr26:9632478-9632175 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 216 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 44, 18 |
| Conread position: | 1-287 |
| Cow position: | chr26:21859715-21860010 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 201 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 32, 95 |
| Conread position: | 1-289 |
| Cow position: | chr26:9064239-9064524 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 48, 16 |
| Conread position: | 1-290 |
| Cow position: | chr26:16604178-16604480 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 214 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 1-293 |
| Cow position: | chr26:17289095-17289388 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 45, 89 |
| Conread position: | 1-305 |
| Cow position: | chr26:3756123-3756425 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 10, 70 |
| Conread position: | 1-338 |
| Cow position: | chr26:783041-782693 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 43, 70 |
| Conread position: | 2-247 |
| Cow position: | chr26:17204249-17204001 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 105, 69 |
| Conread position: | 2-279 |
| Cow position: | chr26:22975165-22975448 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 44, 96 |
| Conread position: | 2-281 |
| Cow position: | chr26:2769949-2769659 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 216 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 43, 129 |
| Conread position: | 2-287 |
| Cow position: | chr26:27585664-27585961 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 99 |
| Conread position: | 3-211 |
| Cow position: | chr26:7103140-7102937 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 37, 95 |
| Conread position: | 3-237 |
| Cow position: | chr26:33227701-33227926 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 43, 61 |
| Conread position: | 5-241 |
| Cow position: | chr26:12669095-12669336 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 39, 215 |
| Conread position: | 6-245 |
| Cow position: | chr26:10292483-10292744 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 38, 95 |
| Conread position: | 7-287 |
| Cow position: | chr26:9666514-9666227 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 219 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 39, 140 |
| Conread position: | 9-326 |
| Cow position: | chr26:29244301-29244618 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 229 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 18, 99 |
| Conread position: | 10-294 |
| Cow position: | chr26:18719153-18719448 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 91 |
| Conread position: | 11-248 |
| Cow position: | chr26:17155424-17155184 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 35, 90 |
| Conread position: | 11-281 |
| Cow position: | chr26:19110810-19111095 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 214 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 35, 84 |
| Conread position: | 19-247 |
| Cow position: | chr26:34169278-34169042 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 26, 74 |
| Conread position: | 19-320 |
| Cow position: | chr26:21578171-21577880 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 209 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 232, 30 |
| Conread position: | 23-247 |
| Cow position: | chr26:7955771-7955996 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 110, 26 |
| Conread position: | 26-247 |
| Cow position: | chr26:8651685-8651464 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 80, 68 |
| Conread position: | 27-240 |
| Cow position: | chr26:12125126-12124916 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 19, 61 |
| Conread position: | 48-232 |
| Cow position: | chr26:2408780-2408601 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 48-249 |
| Cow position: | chr26:11568028-11567827 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 160 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 61, 49 |
| Conread position: | 49-249 |
| Cow position: | chr26:19903323-19903526 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 88, 156 |
| Conread position: | 54-232 |
| Cow position: | chr26:34521517-34521701 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 57-288 |
| Cow position: | chr26:34119086-34118851 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 47, 37 |
| Conread position: | 61-284 |
| Cow position: | chr26:28334881-28334649 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 69, 37 |
| Conread position: | 71-286 |
| Cow position: | chr26:32854318-32854105 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 43, 23 |
| Conread position: | 83-252 |
| Cow position: | chr26:31466662-31466830 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 19, 53 |
| Conread position: | 84-281 |
| Cow position: | chr26:24183067-24182870 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 21, 124 |
| Conread position: | 97-249 |
| Cow position: | chr26:19935367-19935215 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 97-284 |
| Cow position: | chr26:12216847-12217031 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 36, 7 |
| Conread position: | 99-210 |
| Cow position: | chr26:8823710-8823822 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 92 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 109-287 |
| Cow position: | chr26:10523445-10523264 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 24, 63 |
| Conread position: | 135-241 |
| Cow position: | chr26:7387798-7387905 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 88 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 147-287 |
| Cow position: | chr26:19332960-19332817 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 9, 30 |
| Conread position: | 152-250 |
| Cow position: | chr26:30385825-30385922 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 82 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 165-287 |
| Cow position: | chr26:25241689-25241816 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 86, 0 |
Show alignments to all cow chromosomes.