Cow genome map

Conread name: rcmu12_j15.y1

Conread position: 1-231
Cow position: chr27:465041-464816 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 167
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 40, 99

Conread position: 1-237
Cow position: chr27:30560996-30560764 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 175
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 48, 97

Conread position: 1-241
Cow position: chr27:11416532-11416286 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 191
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 45, 100

Conread position: 1-246
Cow position: chr27:6454294-6454040 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 190
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 43, 18

Conread position: 1-246
Cow position: chr27:27053376-27053125 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 175
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 31, 103

Conread position: 1-247
Cow position: chr27:14937341-14937600 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 102

Conread position: 1-247
Cow position: chr27:20765878-20766124 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 178
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 43, 85

Conread position: 1-247
Cow position: chr27:21138906-21138659 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 184
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 40, 15

Conread position: 1-247
Cow position: chr27:24341982-24341733 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 174
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 62, 48

Conread position: 1-249
Cow position: chr27:19601460-19601201 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 201
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 60, 96

Conread position: 1-269
Cow position: chr27:15319530-15319265 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 186
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 21, 82

Conread position: 1-273
Cow position: chr27:26440977-26441250 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 202
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 45, 98

Conread position: 1-275
Cow position: chr27:8048657-8048935 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 100

Conread position: 1-281
Cow position: chr27:16493653-16493376 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 210
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 129, 45

Conread position: 1-284
Cow position: chr27:25970475-25970194 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 197
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 41, 69

Conread position: 1-284
Cow position: chr27:26299920-26299633 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 210
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 43, 83

Conread position: 1-287
Cow position: chr27:23662525-23662809 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 193
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 132, 18

Conread position: 2-211
Cow position: chr27:18186321-18186111 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 155
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 42, 96

Conread position: 2-275
Cow position: chr27:30790531-30790269 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 198
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 9, 53

Conread position: 2-284
Cow position: chr27:25998783-25998493 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 219
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 43, 15

Conread position: 2-284
Cow position: chr27:30365394-30365105 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 212
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 44, 19

Conread position: 3-201
Cow position: chr27:12424836-12425042 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 161
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 43, 18

Conread position: 3-210
Cow position: chr27:23600349-23600138 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 165
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 14, 70

Conread position: 4-249
Cow position: chr27:19909458-19909195 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 185
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 43, 54

Conread position: 4-281
Cow position: chr27:783775-783496 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 201
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 45, 13

Conread position: 4-287
Cow position: chr27:12244053-12244342 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 198
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 126, 30

Conread position: 5-281
Cow position: chr27:6160062-6159777 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 202
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 41, 111

Conread position: 6-222
Cow position: chr27:11356464-11356684 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 158
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 39, 91

Conread position: 7-294
Cow position: chr27:26492626-26492918 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 207
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 33, 102

Conread position: 11-219
Cow position: chr27:23959366-23959160 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 156
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 29, 84

Conread position: 12-287
Cow position: chr27:19083645-19083933 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 198
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 20, 101

Conread position: 17-284
Cow position: chr27:25982666-25982931 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 202
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 47, 13

Conread position: 19-281
Cow position: chr27:2354708-2354972 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 174
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 25, 33

Conread position: 20-287
Cow position: chr27:22108147-22108422 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 200
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 30, 77

Conread position: 40-211
Cow position: chr27:19869868-19869695 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 130
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 9, 55

Conread position: 48-245
Cow position: chr27:24224862-24225068 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 145
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 49, 67

Conread position: 48-278
Cow position: chr27:1536687-1536929 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 181
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 82, 217

Conread position: 58-287
Cow position: chr27:12247698-12247471 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 177
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 75, 34

Conread position: 65-306
Cow position: chr27:13970374-13970616 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 171
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 68, 139

Conread position: 96-249
Cow position: chr27:21970902-21971055 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 122
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 37, 15

Conread position: 97-247
Cow position: chr27:13958359-13958515 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 116
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 13, 0

Conread position: 104-281
Cow position: chr27:10119102-10119293 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 145
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 29, 0

Conread position: 114-295
Cow position: chr27:25880068-25879877 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 139
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 16, 0

Conread position: 116-284
Cow position: chr27:16525880-16526054 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 131
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 17, 0

Conread position: 122-281
Cow position: chr27:11746547-11746378 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 11, 0

Conread position: 132-288
Cow position: chr27:6347807-6347969 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 123
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 101, 152

Conread position: 132-346
Cow position: chr27:18219341-18219133 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 167
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 119, 0

Conread position: 145-273
Cow position: chr27:21991461-21991329 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 104
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 106, 11

Conread position: 148-281
Cow position: chr27:17875214-17875352 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 107
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 103, 0

Conread position: 148-284
Cow position: chr27:1899644-1899784 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 108
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 93, 0

Conread position: 151-284
Cow position: chr27:9692095-9692230 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 111
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 97, 11

Conread position: 152-287
Cow position: chr27:31339830-31339969 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 99, 20

Conread position: 169-287
Cow position: chr27:7983196-7983319 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 99
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 81, 0

Conread position: 179-287
Cow position: chr27:11322500-11322392 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 90
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.