Cow genome map
| Conread name: | rcmu12_j15.y1 |
| Conread position: | 1-181 |
| Cow position: | chr28:18462732-18462546 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 8, 27 |
| Conread position: | 1-208 |
| Cow position: | chr28:2814621-2814415 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 46, 25 |
| Conread position: | 1-211 |
| Cow position: | chr28:10035277-10035483 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 43, 61 |
| Conread position: | 1-211 |
| Cow position: | chr28:21570067-21570287 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 43, 97 |
| Conread position: | 1-219 |
| Cow position: | chr28:13693629-13693854 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 178 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 41, 100 |
| Conread position: | 1-232 |
| Cow position: | chr28:27659799-27659573 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 42, 90 |
| Conread position: | 1-233 |
| Cow position: | chr28:6643398-6643164 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 129, 25 |
| Conread position: | 1-234 |
| Cow position: | chr28:12998988-12999214 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 105, 48 |
| Conread position: | 1-247 |
| Cow position: | chr28:3769783-3769538 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 43, 25 |
| Conread position: | 1-247 |
| Cow position: | chr28:23621426-23621666 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 31, 96 |
| Conread position: | 1-247 |
| Cow position: | chr28:25563959-25564215 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 46, 21 |
| Conread position: | 1-249 |
| Cow position: | chr28:29455778-29455536 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 44, 99 |
| Conread position: | 1-253 |
| Cow position: | chr28:19133666-19133912 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 95, 18 |
| Conread position: | 1-279 |
| Cow position: | chr28:11501011-11500723 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 214 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 31, 153 |
| Conread position: | 1-282 |
| Cow position: | chr28:9176873-9176592 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 10, 19 |
| Conread position: | 1-287 |
| Cow position: | chr28:4763753-4764054 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 218 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 1-287 |
| Cow position: | chr28:5475152-5474855 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 44, 20 |
| Conread position: | 1-287 |
| Cow position: | chr28:9822099-9821799 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 40, 15 |
| Conread position: | 1-287 |
| Cow position: | chr28:15082047-15081749 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 23, 104 |
| Conread position: | 2-172 |
| Cow position: | chr28:12942255-12942435 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 2-247 |
| Cow position: | chr28:21873650-21873892 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 44, 17 |
| Conread position: | 2-247 |
| Cow position: | chr28:23668906-23668648 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 42, 128 |
| Conread position: | 2-287 |
| Cow position: | chr28:5406433-5406719 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 9, 99 |
| Conread position: | 2-298 |
| Cow position: | chr28:15677773-15678070 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 205 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 26, 95 |
| Conread position: | 4-287 |
| Cow position: | chr28:4274961-4274668 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 79 |
| Conread position: | 5-330 |
| Cow position: | chr28:20963646-20963309 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 22, 90 |
| Conread position: | 8-284 |
| Cow position: | chr28:33485523-33485821 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 9, 97 |
| Conread position: | 11-237 |
| Cow position: | chr28:13255989-13255752 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 32, 110 |
| Conread position: | 12-287 |
| Cow position: | chr28:1202348-1202069 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 66 |
| Conread position: | 15-241 |
| Cow position: | chr28:12047021-12046786 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 31, 91 |
| Conread position: | 16-245 |
| Cow position: | chr28:9237207-9237444 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 26, 85 |
| Conread position: | 36-287 |
| Cow position: | chr28:33285194-33284932 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 70, 58 |
| Conread position: | 48-219 |
| Cow position: | chr28:4406183-4406349 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 48-287 |
| Cow position: | chr28:31166054-31165805 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 63, 53 |
| Conread position: | 49-247 |
| Cow position: | chr28:7540227-7540026 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 84, 45 |
| Conread position: | 49-281 |
| Cow position: | chr28:19253412-19253649 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 83, 165 |
| Conread position: | 49-284 |
| Cow position: | chr28:11200937-11200715 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 202, 47 |
| Conread position: | 64-284 |
| Cow position: | chr28:20275074-20275297 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 42, 32 |
| Conread position: | 65-247 |
| Cow position: | chr28:11181216-11181029 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 68, 29 |
| Conread position: | 83-247 |
| Cow position: | chr28:8335925-8336094 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 97-281 |
| Cow position: | chr28:31373086-31373276 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 36, 128 |
| Conread position: | 97-287 |
| Cow position: | chr28:1608165-1608367 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 36, 180 |
| Conread position: | 100-247 |
| Cow position: | chr28:25340253-25340403 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 33, 141 |
| Conread position: | 100-249 |
| Cow position: | chr28:6993630-6993483 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 9, 110 |
| Conread position: | 144-243 |
| Cow position: | chr28:22421956-22421857 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 81 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.