Cow genome map
| Conread name: | rcmu12_j15.y1 |
| Conread position: | 1-221 |
| Cow position: | chr29:32644795-32645011 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 44, 99 |
| Conread position: | 1-241 |
| Cow position: | chr29:7663398-7663150 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 55, 96 |
| Conread position: | 1-243 |
| Cow position: | chr29:942499-942747 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 43, 101 |
| Conread position: | 1-245 |
| Cow position: | chr29:19508827-19509070 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 45, 18 |
| Conread position: | 1-247 |
| Cow position: | chr29:356197-356447 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 48, 36 |
| Conread position: | 1-247 |
| Cow position: | chr29:18695129-18695376 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 190 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 52, 25 |
| Conread position: | 1-247 |
| Cow position: | chr29:25924096-25923836 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 43, 227 |
| Conread position: | 1-247 |
| Cow position: | chr29:39023473-39023212 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 62, 48 |
| Conread position: | 1-247 |
| Cow position: | chr29:41083031-41083274 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 109, 6 |
| Conread position: | 1-249 |
| Cow position: | chr29:13554006-13554265 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 1-249 |
| Cow position: | chr29:17543322-17543571 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 12, 53 |
| Conread position: | 1-275 |
| Cow position: | chr29:11787668-11787945 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 99 |
| Conread position: | 1-275 |
| Cow position: | chr29:16055263-16054977 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 118 |
| Conread position: | 1-279 |
| Cow position: | chr29:12451247-12451526 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 217 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 46, 8 |
| Conread position: | 1-279 |
| Cow position: | chr29:34736597-34736325 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 38, 99 |
| Conread position: | 1-281 |
| Cow position: | chr29:29302780-29302498 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 213 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 52, 48 |
| Conread position: | 1-284 |
| Cow position: | chr29:18540934-18541214 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 196 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 48, 28 |
| Conread position: | 1-287 |
| Cow position: | chr29:4367592-4367894 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 213 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 16, 118 |
| Conread position: | 1-287 |
| Cow position: | chr29:11071828-11071516 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 13, 121 |
| Conread position: | 1-287 |
| Cow position: | chr29:18072805-18073108 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 225 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 46, 78 |
| Conread position: | 2-129 |
| Cow position: | chr29:603442-603315 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 44, 17 |
| Conread position: | 2-245 |
| Cow position: | chr29:19907230-19907477 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 44, 96 |
| Conread position: | 2-259 |
| Cow position: | chr29:650151-650410 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 42, 86 |
| Conread position: | 2-281 |
| Cow position: | chr29:2274955-2274680 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 45, 62 |
| Conread position: | 2-287 |
| Cow position: | chr29:22895599-22895898 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 47, 97 |
| Conread position: | 2-295 |
| Cow position: | chr29:7408012-7407725 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 99 |
| Conread position: | 4-247 |
| Cow position: | chr29:6772007-6772255 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 194 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 37, 110 |
| Conread position: | 4-247 |
| Cow position: | chr29:26129376-26129620 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 45, 83 |
| Conread position: | 4-279 |
| Cow position: | chr29:13634422-13634143 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 196 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 43, 90 |
| Conread position: | 5-270 |
| Cow position: | chr29:14758987-14758709 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 5-287 |
| Cow position: | chr29:9512144-9512426 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 125, 27 |
| Conread position: | 6-284 |
| Cow position: | chr29:18963611-18963902 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 209 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 10-292 |
| Cow position: | chr29:4444596-4444894 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 11-259 |
| Cow position: | chr29:10187936-10188197 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 14-247 |
| Cow position: | chr29:26298866-26299095 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 35, 47 |
| Conread position: | 17-203 |
| Cow position: | chr29:23233336-23233529 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 30, 96 |
| Conread position: | 18-287 |
| Cow position: | chr29:7054308-7054581 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 55 |
| Conread position: | 19-208 |
| Cow position: | chr29:32645361-32645547 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 27, 78 |
| Conread position: | 19-284 |
| Cow position: | chr29:34699933-34699678 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 198 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 87, 28 |
| Conread position: | 27-280 |
| Cow position: | chr29:1340679-1340946 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 14, 74 |
| Conread position: | 40-241 |
| Cow position: | chr29:9938170-9937962 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 9, 55 |
| Conread position: | 40-247 |
| Cow position: | chr29:25426741-25426533 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 9, 48 |
| Conread position: | 54-272 |
| Cow position: | chr29:38759089-38758873 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 75, 48 |
| Conread position: | 54-287 |
| Cow position: | chr29:21675325-21675561 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 78, 42 |
| Conread position: | 108-249 |
| Cow position: | chr29:18067889-18068032 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 25, 117 |
| Conread position: | 110-284 |
| Cow position: | chr29:19734654-19734829 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 20, 34 |
| Conread position: | 116-287 |
| Cow position: | chr29:11766711-11766885 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 17, 75 |
| Conread position: | 126-249 |
| Cow position: | chr29:24323655-24323778 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 7, 96 |
| Conread position: | 133-249 |
| Cow position: | chr29:7637547-7637431 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 92 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 139-292 |
| Cow position: | chr29:7129530-7129373 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 104, 125 |
| Conread position: | 147-287 |
| Cow position: | chr29:9662041-9662186 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 148-284 |
| Cow position: | chr29:23742235-23742098 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 101, 52 |
| Conread position: | 151-281 |
| Cow position: | chr29:32080576-32080711 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 100, 0 |
Show alignments to all cow chromosomes.