Cow genome map

Conread name: rcmu12_j15.y1

Conread position: 1-130
Cow position:
Alignm length: 137
Alignm identity: 105
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 17, 0

Conread position: 1-177
Cow position:
Alignm length: 188
Alignm identity: 147
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 44, 97

Conread position: 1-208
Cow position:
Alignm length: 216
Alignm identity: 148
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 45, 18

Conread position: 1-211
Cow position:
Alignm length: 217
Alignm identity: 160
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 30, 0

Conread position: 1-235
Cow position:
Alignm length: 246
Alignm identity: 164
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 19, 82

Conread position: 1-235
Cow position:
Alignm length: 239
Alignm identity: 161
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 44, 90

Conread position: 1-236
Cow position:
Alignm length: 240
Alignm identity: 172
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 45, 96

Conread position: 1-237
Cow position:
Alignm length: 244
Alignm identity: 180
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 45, 15

Conread position: 1-238
Cow position:
Alignm length: 247
Alignm identity: 180
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 45, 102

Conread position: 1-238
Cow position:
Alignm length: 241
Alignm identity: 167
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 45, 95

Conread position: 1-241
Cow position:
Alignm length: 254
Alignm identity: 190
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 43, 7

Conread position: 1-245
Cow position:
Alignm length: 254
Alignm identity: 189
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 45, 113

Conread position: 1-245
Cow position:
Alignm length: 252
Alignm identity: 174
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 31, 71

Conread position: 1-245
Cow position:
Alignm length: 258
Alignm identity: 193
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 44, 94

Conread position: 1-245
Cow position:
Alignm length: 252
Alignm identity: 171
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 48, 31

Conread position: 1-247
Cow position:
Alignm length: 261
Alignm identity: 194
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 45, 18

Conread position: 1-247
Cow position:
Alignm length: 249
Alignm identity: 183
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 105, 55

Conread position: 1-249
Cow position:
Alignm length: 259
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 118

Conread position: 1-249
Cow position:
Alignm length: 257
Alignm identity: 174
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 55, 17

Conread position: 1-249
Cow position:
Alignm length: 250
Alignm identity: 185
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 132, 47

Conread position: 1-257
Cow position:
Alignm length: 261
Alignm identity: 184
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 45, 72

Conread position: 1-257
Cow position:
Alignm length: 272
Alignm identity: 188
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 45, 15

Conread position: 1-261
Cow position:
Alignm length: 270
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 0

Conread position: 1-269
Cow position:
Alignm length: 276
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 52

Conread position: 1-273
Cow position:
Alignm length: 283
Alignm identity: 198
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 44, 20

Conread position: 1-279
Cow position:
Alignm length: 285
Alignm identity: 202
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 132, 25

Conread position: 1-280
Cow position:
Alignm length: 287
Alignm identity: 193
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 48, 36

Conread position: 1-281
Cow position:
Alignm length: 290
Alignm identity: 202
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 48, 24

Conread position: 1-284
Cow position:
Alignm length: 294
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 103

Conread position: 1-284
Cow position:
Alignm length: 303
Alignm identity: 220
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 45, 18

Conread position: 1-287
Cow position:
Alignm length: 293
Alignm identity: 214
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 45, 94

Conread position: 1-287
Cow position:
Alignm length: 298
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 98

Conread position: 1-287
Cow position:
Alignm length: 291
Alignm identity: 205
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 55, 67

Conread position: 1-287
Cow position:
Alignm length: 303
Alignm identity: 226
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 45, 98

Conread position: 1-287
Cow position:
Alignm length: 301
Alignm identity: 222
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 45, 102

Conread position: 1-287
Cow position:
Alignm length: 299
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 274

Conread position: 1-287
Cow position:
Alignm length: 300
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 125

Conread position: 1-287
Cow position:
Alignm length: 302
Alignm identity: 220
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 21, 101

Conread position: 1-287
Cow position:
Alignm length: 297
Alignm identity: 206
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 132, 33

Conread position: 1-287
Cow position:
Alignm length: 305
Alignm identity: 203
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 36, 111

Conread position: 1-287
Cow position:
Alignm length: 294
Alignm identity: 206
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 52, 57

Conread position: 1-294
Cow position:
Alignm length: 309
Alignm identity: 227
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 20, 100

Conread position: 1-295
Cow position:
Alignm length: 313
Alignm identity: 216
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 45, 102

Conread position: 2-231
Cow position:
Alignm length: 237
Alignm identity: 163
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 15, 33

Conread position: 2-233
Cow position:
Alignm length: 240
Alignm identity: 186
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 44, 15

Conread position: 2-236
Cow position:
Alignm length: 236
Alignm identity: 160
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 44, 60

Conread position: 2-287
Cow position:
Alignm length: 291
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 247, 14

Conread position: 2-287
Cow position:
Alignm length: 298
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 97

Conread position: 2-288
Cow position:
Alignm length: 292
Alignm identity: 192
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 25, 105

Conread position: 2-288
Cow position:
Alignm length: 303
Alignm identity: 209
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 26, 212

Conread position: 3-193
Cow position:
Alignm length: 200
Alignm identity: 146
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 38, 110

Conread position: 3-241
Cow position:
Alignm length: 246
Alignm identity: 184
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 43, 65

Conread position: 3-275
Cow position:
Alignm length: 280
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 62

Conread position: 3-287
Cow position:
Alignm length: 299
Alignm identity: 211
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 14, 100

Conread position: 3-287
Cow position:
Alignm length: 298
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 20

Conread position: 4-284
Cow position:
Alignm length: 291
Alignm identity: 207
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 13, 160

Conread position: 4-320
Cow position:
Alignm length: 326
Alignm identity: 225
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 28, 254

Conread position: 5-281
Cow position:
Alignm length: 291
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 89

Conread position: 5-287
Cow position:
Alignm length: 300
Alignm identity: 219
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 41, 11

Conread position: 10-237
Cow position:
Alignm length: 230
Alignm identity: 163
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 36, 82

Conread position: 10-287
Cow position:
Alignm length: 290
Alignm identity: 196
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 34, 87

Conread position: 11-273
Cow position:
Alignm length: 278
Alignm identity: 190
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 32, 228

Conread position: 12-232
Cow position:
Alignm length: 223
Alignm identity: 157
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 37, 146

Conread position: 12-351
Cow position:
Alignm length: 356
Alignm identity: 236
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 34, 83

Conread position: 14-210
Cow position:
Alignm length: 200
Alignm identity: 146
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 90, 99

Conread position: 14-247
Cow position:
Alignm length: 241
Alignm identity: 182
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 32, 223

Conread position: 14-287
Cow position:
Alignm length: 289
Alignm identity: 208
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 32, 122

Conread position: 19-284
Cow position:
Alignm length: 284
Alignm identity: 197
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 27, 59

Conread position: 21-237
Cow position:
Alignm length: 218
Alignm identity: 153
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 112, 82

Conread position: 23-203
Cow position:
Alignm length: 187
Alignm identity: 140
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 23, 74

Conread position: 25-287
Cow position:
Alignm length: 271
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 74

Conread position: 26-235
Cow position:
Alignm length: 214
Alignm identity: 152
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 19, 68

Conread position: 26-282
Cow position:
Alignm length: 269
Alignm identity: 198
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 20, 187

Conread position: 28-281
Cow position:
Alignm length: 265
Alignm identity: 192
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 28, 54

Conread position: 31-252
Cow position:
Alignm length: 224
Alignm identity: 163
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 19, 72

Conread position: 31-284
Cow position:
Alignm length: 264
Alignm identity: 184
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 15, 74

Conread position: 36-287
Cow position:
Alignm length: 260
Alignm identity: 192
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 97, 58

Conread position: 48-273
Cow position:
Alignm length: 229
Alignm identity: 169
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 58, 198

Conread position: 48-287
Cow position:
Alignm length: 244
Alignm identity: 169
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 55, 38

Conread position: 54-249
Cow position:
Alignm length: 198
Alignm identity: 150
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 79, 52

Conread position: 77-284
Cow position:
Alignm length: 221
Alignm identity: 163
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 9, 35

Conread position: 77-287
Cow position:
Alignm length: 217
Alignm identity: 159
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 56, 159

Conread position: 83-284
Cow position:
Alignm length: 217
Alignm identity: 157
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 50, 0

Conread position: 95-287
Cow position:
Alignm length: 200
Alignm identity: 152
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 38, 21

Conread position: 100-247
Cow position:
Alignm length: 153
Alignm identity: 121
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 30, 9

Conread position: 102-248
Cow position:
Alignm length: 148
Alignm identity: 123
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 31, 42

Conread position: 110-284
Cow position:
Alignm length: 183
Alignm identity: 141
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 71, 17

Conread position: 112-292
Cow position:
Alignm length: 188
Alignm identity: 134
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 21, 0

Conread position: 123-249
Cow position:
Alignm length: 127
Alignm identity: 104
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 68, 0

Conread position: 138-287
Cow position:
Alignm length: 155
Alignm identity: 118
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 113, 130

Conread position: 139-249
Cow position:
Alignm length: 111
Alignm identity: 96
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 69, 0

Conread position: 145-279
Cow position:
Alignm length: 142
Alignm identity: 113
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 63, 0

Conread position: 148-284
Cow position:
Alignm length: 142
Alignm identity: 106
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 103, 0

Conread position: 171-287
Cow position:
Alignm length: 119
Alignm identity: 93
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 78, 0

Show alignments to all cow chromosomes.