Cow genome map

Conread name: rcmu12_j15.y1

Conread position: 1-130
Cow position: chr4:45116195-45116059 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 105
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 17, 0

Conread position: 1-177
Cow position: chr4:41154510-41154694 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 147
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 44, 97

Conread position: 1-208
Cow position: chr4:13406576-13406790 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 148
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 45, 18

Conread position: 1-211
Cow position: chr4:33030418-33030634 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 160
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 30, 0

Conread position: 1-235
Cow position: chr4:12700477-12700233 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 164
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 19, 82

Conread position: 1-235
Cow position: chr4:58948044-58947813 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 161
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 44, 90

Conread position: 1-236
Cow position: chr4:25906459-25906231 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 172
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 45, 96

Conread position: 1-237
Cow position: chr4:24497951-24497719 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 180
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 45, 15

Conread position: 1-238
Cow position: chr4:5553923-5553685 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 180
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 45, 102

Conread position: 1-238
Cow position: chr4:68634829-68635060 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 167
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 45, 95

Conread position: 1-241
Cow position: chr4:37880798-37881049 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 190
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 43, 7

Conread position: 1-245
Cow position: chr4:9845782-9846031 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 189
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 45, 113

Conread position: 1-245
Cow position: chr4:12697509-12697752 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 174
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 31, 71

Conread position: 1-245
Cow position: chr4:50769900-50769647 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 193
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 44, 94

Conread position: 1-245
Cow position: chr4:65841896-65841649 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 171
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 48, 31

Conread position: 1-247
Cow position: chr4:36813239-36813498 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 194
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 45, 18

Conread position: 1-247
Cow position: chr4:45952504-45952268 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 183
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 105, 55

Conread position: 1-249
Cow position: chr4:22528522-22528265 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 118

Conread position: 1-249
Cow position: chr4:36755616-36755867 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 174
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 55, 17

Conread position: 1-249
Cow position: chr4:48499705-48499938 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 185
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 132, 47

Conread position: 1-257
Cow position: chr4:46083023-46082778 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 184
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 45, 72

Conread position: 1-257
Cow position: chr4:61624720-61624453 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 188
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 45, 15

Conread position: 1-261
Cow position: chr4:18439704-18439435 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 0

Conread position: 1-269
Cow position: chr4:65406492-65406227 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 52

Conread position: 1-273
Cow position: chr4:30671539-30671264 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 198
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 44, 20

Conread position: 1-279
Cow position: chr4:20279209-20279478 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 202
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 132, 25

Conread position: 1-280
Cow position: chr4:51605742-51605462 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 193
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 48, 36

Conread position: 1-281
Cow position: chr4:35870077-35870362 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 202
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 48, 24

Conread position: 1-284
Cow position: chr4:2121527-2121237 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 103

Conread position: 1-284
Cow position: chr4:10837514-10837220 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 220
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 45, 18

Conread position: 1-287
Cow position: chr4:9547842-9548117 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 214
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 45, 94

Conread position: 1-287
Cow position: chr4:10992331-10992036 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 98

Conread position: 1-287
Cow position: chr4:12667474-12667208 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 205
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 55, 67

Conread position: 1-287
Cow position: chr4:19307125-19307419 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 226
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 45, 98

Conread position: 1-287
Cow position: chr4:23311392-23311105 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 222
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 45, 102

Conread position: 1-287
Cow position: chr4:23758670-23758966 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 274

Conread position: 1-287
Cow position: chr4:31172540-31172837 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 125

Conread position: 1-287
Cow position: chr4:39767215-39767514 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 220
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 21, 101

Conread position: 1-287
Cow position: chr4:44665497-44665207 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 206
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 132, 33

Conread position: 1-287
Cow position: chr4:58834536-58834234 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 203
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 36, 111

Conread position: 1-287
Cow position: chr4:62411743-62412017 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 206
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 52, 57

Conread position: 1-294
Cow position: chr4:21365271-21365575 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 227
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 20, 100

Conread position: 1-295
Cow position: chr4:21073287-21072983 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 216
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 45, 102

Conread position: 2-231
Cow position: chr4:23494798-23495026 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 163
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 15, 33

Conread position: 2-233
Cow position: chr4:21259083-21259319 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 186
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 44, 15

Conread position: 2-236
Cow position: chr4:7213716-7213489 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 160
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 44, 60

Conread position: 2-287
Cow position: chr4:35471202-35471482 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 247, 14

Conread position: 2-287
Cow position: chr4:45918903-45919198 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 97

Conread position: 2-288
Cow position: chr4:1374234-1374519 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 192
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 25, 105

Conread position: 2-288
Cow position: chr4:20066354-20066056 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 209
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 26, 212

Conread position: 3-193
Cow position: chr4:49001429-49001231 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 146
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 38, 110

Conread position: 3-241
Cow position: chr4:5797840-5798080 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 184
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 43, 65

Conread position: 3-275
Cow position: chr4:30131213-30131488 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 62

Conread position: 3-287
Cow position: chr4:30771-30475 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 211
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 14, 100

Conread position: 3-287
Cow position: chr4:22249576-22249285 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 20

Conread position: 4-284
Cow position: chr4:23166773-23167059 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 207
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 13, 160

Conread position: 4-320
Cow position: chr4:36945324-36945001 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 225
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 28, 254

Conread position: 5-281
Cow position: chr4:22115476-22115764 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 89

Conread position: 5-287
Cow position: chr4:25972767-25973063 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 219
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 41, 11

Conread position: 10-237
Cow position: chr4:23381930-23381708 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 163
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 36, 82

Conread position: 10-287
Cow position: chr4:52225883-52226168 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 196
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 34, 87

Conread position: 11-273
Cow position: chr4:68795421-68795146 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 190
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 32, 228

Conread position: 12-232
Cow position: chr4:12995845-12996061 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 157
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 37, 146

Conread position: 12-351
Cow position: chr4:5580436-5580785 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 236
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 34, 83

Conread position: 14-210
Cow position: chr4:13341117-13340923 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 146
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 90, 99

Conread position: 14-247
Cow position: chr4:40623221-40622982 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 182
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 32, 223

Conread position: 14-287
Cow position: chr4:27371985-27371700 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 208
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 32, 122

Conread position: 19-284
Cow position: chr4:21250144-21249866 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 197
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 27, 59

Conread position: 21-237
Cow position: chr4:19729207-19728994 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 153
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 112, 82

Conread position: 23-203
Cow position: chr4:33667088-33667272 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 140
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 23, 74

Conread position: 25-287
Cow position: chr4:54146574-54146311 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 74

Conread position: 26-235
Cow position: chr4:20090696-20090493 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 152
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 19, 68

Conread position: 26-282
Cow position: chr4:48283391-48283131 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 198
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 20, 187

Conread position: 28-281
Cow position: chr4:60030803-60031062 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 192
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 28, 54

Conread position: 31-252
Cow position: chr4:26373759-26373550 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 163
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 19, 72

Conread position: 31-284
Cow position: chr4:22235229-22235487 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 184
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 15, 74

Conread position: 36-287
Cow position: chr4:40433997-40433741 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 192
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 97, 58

Conread position: 48-273
Cow position: chr4:53752441-53752667 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 169
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 58, 198

Conread position: 48-287
Cow position: chr4:5002682-5002921 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 169
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 55, 38

Conread position: 54-249
Cow position: chr4:3267939-3267746 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 150
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 79, 52

Conread position: 77-284
Cow position: chr4:44279993-44279774 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 163
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 9, 35

Conread position: 77-287
Cow position: chr4:1799855-1800070 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 159
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 56, 159

Conread position: 83-284
Cow position: chr4:38877713-38877929 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 157
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 50, 0

Conread position: 95-287
Cow position: chr4:65604505-65604310 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 152
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 38, 21

Conread position: 100-247
Cow position: chr4:17304424-17304273 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 121
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 30, 9

Conread position: 102-248
Cow position: chr4:24415536-24415681 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 123
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 31, 42

Conread position: 110-284
Cow position: chr4:24755546-24755725 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 141
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 71, 17

Conread position: 112-292
Cow position: chr4:9799986-9800173 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 134
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 21, 0

Conread position: 123-249
Cow position: chr4:17478304-17478181 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 104
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 68, 0

Conread position: 138-287
Cow position: chr4:63417690-63417538 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 113, 130

Conread position: 139-249
Cow position: chr4:59719617-59719724 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 96
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 69, 0

Conread position: 145-279
Cow position: chr4:20161466-20161325 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 113
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 63, 0

Conread position: 148-284
Cow position: chr4:51433431-51433572 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 106
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 103, 0

Conread position: 171-287
Cow position: chr4:37611242-37611124 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 93
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 78, 0

Show alignments to all cow chromosomes.