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Cow genome map

           
Conread name:
           
rcmu17_f19.y1
        

               
Conread position:
               
49-316
               

               
Cow position:
               
chr6:16191572-16191837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
110, 198
               

               
Conread position:
               
59-315
               

               
Cow position:
               
chr6:36284151-36284404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
118, 31
               

               
Conread position:
               
63-257
               

               
Cow position:
               
chr6:54600258-54600454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
98, 167
               

               
Conread position:
               
63-294
               

               
Cow position:
               
chr6:31525955-31526190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
96, 142
               

               
Conread position:
               
66-218
               

               
Cow position:
               
chr6:49694296-49694446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
66-249
               

               
Cow position:
               
chr6:59108860-59109042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
92, 100
               

               
Conread position:
               
66-303
               

               
Cow position:
               
chr6:12845299-12845532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
20, 98
               

               
Conread position:
               
66-312
               

               
Cow position:
               
chr6:60783788-60784033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
92, 32
               

               
Conread position:
               
66-315
               

               
Cow position:
               
chr6:10176381-10176137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 93
               

               
Conread position:
               
66-315
               

               
Cow position:
               
chr6:33509703-33509951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
16, 85
               

               
Conread position:
               
66-315
               

               
Cow position:
               
chr6:62437331-62437579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
92, 28
               

               
Conread position:
               
66-315
               

               
Cow position:
               
chr6:67456633-67456883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
20, 100
               

               
Conread position:
               
66-316
               

               
Cow position:
               
chr6:35993501-35993749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 60
               

               
Conread position:
               
66-316
               

               
Cow position:
               
chr6:37199615-37199372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
98, 158
               

               
Conread position:
               
66-317
               

               
Cow position:
               
chr6:21061972-21061720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
88, 148
               

               
Conread position:
               
66-325
               

               
Cow position:
               
chr6:445235-445498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
22, 172
               

               
Conread position:
               
67-305
               

               
Cow position:
               
chr6:58608523-58608289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
176, 89
               

               
Conread position:
               
67-314
               

               
Cow position:
               
chr6:22985942-22985689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
96, 119
               

               
Conread position:
               
67-327
               

               
Cow position:
               
chr6:17334137-17333872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
100, 83
               

               
Conread position:
               
67-330
               

               
Cow position:
               
chr6:5330331-5330595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
100, 38
               

               
Conread position:
               
67-330
               

               
Cow position:
               
chr6:62371259-62371003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
39, 85
               

               
Conread position:
               
68-219
               

               
Cow position:
               
chr6:9839087-9839240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
68-224
               

               
Cow position:
               
chr6:47150708-47150866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
68-227
               

               
Cow position:
               
chr6:46998222-46998063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
45, 89
               

               
Conread position:
               
68-249
               

               
Cow position:
               
chr6:62925080-62924899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
145, 79
               

               
Conread position:
               
68-257
               

               
Cow position:
               
chr6:22502992-22502805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
183, 82
               

               
Conread position:
               
68-303
               

               
Cow position:
               
chr6:24004460-24004689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
183, 58
               

               
Conread position:
               
68-305
               

               
Cow position:
               
chr6:15997301-15997064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
30, 173
               

               
Conread position:
               
68-310
               

               
Cow position:
               
chr6:11830112-11830347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
93, 72
               

               
Conread position:
               
68-312
               

               
Cow position:
               
chr6:4468685-4468925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
93, 125
               

               
Conread position:
               
68-315
               

               
Cow position:
               
chr6:43135019-43134774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
183, 36
               

               
Conread position:
               
68-315
               

               
Cow position:
               
chr6:45388247-45388488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
122, 91
               

               
Conread position:
               
68-315
               

               
Cow position:
               
chr6:46274211-46273968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
86, 50
               

               
Conread position:
               
68-315
               

               
Cow position:
               
chr6:47355741-47355987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
193, 72
               

               
Conread position:
               
68-316
               

               
Cow position:
               
chr6:18049107-18048860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
92, 83
               

               
Conread position:
               
68-327
               

               
Cow position:
               
chr6:46465740-46465996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
183, 94
               

               
Conread position:
               
68-330
               

               
Cow position:
               
chr6:16700182-16700435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
183, 92
               

               
Conread position:
               
68-330
               

               
Cow position:
               
chr6:17817065-17816810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
123, 71
               

               
Conread position:
               
69-196
               

               
Cow position:
               
chr6:53711033-53711160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
69-203
               

               
Cow position:
               
chr6:61137292-61137427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
69-315
               

               
Cow position:
               
chr6:61515273-61515028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
89, 162
               

               
Conread position:
               
69-330
               

               
Cow position:
               
chr6:16103276-16103011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
182, 51
               

               
Conread position:
               
70-202
               

               
Cow position:
               
chr6:20230909-20230775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
70-237
               

               
Cow position:
               
chr6:34075946-34076116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
70-255
               

               
Cow position:
               
chr6:54208218-54208031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
97, 79
               

               
Conread position:
               
70-257
               

               
Cow position:
               
chr6:1371308-1371120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
55, 159
               

               
Conread position:
               
70-288
               

               
Cow position:
               
chr6:16746262-16746481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
97, 78
               

               
Conread position:
               
70-298
               

               
Cow position:
               
chr6:36645309-36645533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
86, 49
               

               
Conread position:
               
70-303
               

               
Cow position:
               
chr6:63197247-63197010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
31, 161
               

               
Conread position:
               
70-307
               

               
Cow position:
               
chr6:42961441-42961206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
83, 47
               

               
Conread position:
               
70-312
               

               
Cow position:
               
chr6:16266641-16266886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
85, 160
               

               
Conread position:
               
70-312
               

               
Cow position:
               
chr6:20157250-20157495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
91, 158
               

               
Conread position:
               
70-315
               

               
Cow position:
               
chr6:2153673-2153434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
181, 38
               

               
Conread position:
               
70-315
               

               
Cow position:
               
chr6:3595710-3595956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
99, 70
               

               
Conread position:
               
70-315
               

               
Cow position:
               
chr6:8125250-8125491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
88, 35
               

               
Conread position:
               
70-315
               

               
Cow position:
               
chr6:17704741-17704996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
72, 167
               

               
Conread position:
               
70-315
               

               
Cow position:
               
chr6:24110206-24110446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
91, 35
               

               
Conread position:
               
70-317
               

               
Cow position:
               
chr6:10039643-10039890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
97, 44
               

               
Conread position:
               
70-317
               

               
Cow position:
               
chr6:24781637-24781393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
51, 97
               

               
Conread position:
               
70-320
               

               
Cow position:
               
chr6:55209478-55209727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
97, 74
               

               
Conread position:
               
70-321
               

               
Cow position:
               
chr6:8966010-8966267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
76, 128
               

               
Conread position:
               
70-323
               

               
Cow position:
               
chr6:7989490-7989243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
55, 78
               

               
Conread position:
               
70-327
               

               
Cow position:
               
chr6:48281918-48282173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
93, 46
               

               
Conread position:
               
70-330
               

               
Cow position:
               
chr6:66433865-66434135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
81, 35
               

               
Conread position:
               
70-330
               

               
Cow position:
               
chr6:67281816-67282072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
94, 70
               

               
Conread position:
               
70-331
               

               
Cow position:
               
chr6:21399831-21399571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
97, 35
               

               
Conread position:
               
71-192
               

               
Cow position:
               
chr6:14839104-14838984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
90, 67
               

               
Conread position:
               
71-196
               

               
Cow position:
               
chr6:357968-357841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
71-208
               

               
Cow position:
               
chr6:67304727-67304862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
87, 29
               

               
Conread position:
               
71-223
               

               
Cow position:
               
chr6:5413743-5413894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
85, 98
               

               
Conread position:
               
71-245
               

               
Cow position:
               
chr6:44127527-44127705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
71-275
               

               
Cow position:
               
chr6:55763775-55763978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
180, 138
               

               
Conread position:
               
71-278
               

               
Cow position:
               
chr6:54368978-54368776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
182, 61
               

               
Conread position:
               
71-289
               

               
Cow position:
               
chr6:38614736-38614951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
91, 153
               

               
Conread position:
               
71-292
               

               
Cow position:
               
chr6:20206197-20206417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
180, 78
               

               
Conread position:
               
71-303
               

               
Cow position:
               
chr6:19012987-19013216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
33, 37
               

               
Conread position:
               
71-306
               

               
Cow position:
               
chr6:19681602-19681369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
90, 38
               

               
Conread position:
               
71-306
               

               
Cow position:
               
chr6:42565609-42565843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 96
               

               
Conread position:
               
71-306
               

               
Cow position:
               
chr6:63047499-63047748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
91, 170
               

               
Conread position:
               
71-314
               

               
Cow position:
               
chr6:36470646-36470398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
90, 161
               

               
Conread position:
               
71-314
               

               
Cow position:
               
chr6:54490815-54490573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
85, 167
               

               
Conread position:
               
71-315
               

               
Cow position:
               
chr6:16316228-16316481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
71-315
               

               
Cow position:
               
chr6:19045546-19045787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
180, 85
               

               
Conread position:
               
71-315
               

               
Cow position:
               
chr6:50467057-50467300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
90, 68
               

               
Conread position:
               
71-315
               

               
Cow position:
               
chr6:52412781-52413024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
101, 78
               

               
Conread position:
               
71-315
               

               
Cow position:
               
chr6:62324913-62325154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
134, 93
               

               
Conread position:
               
71-316
               

               
Cow position:
               
chr6:51674833-51675074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
138, 67
               

               
Conread position:
               
71-316
               

               
Cow position:
               
chr6:60118070-60118313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
88, 73
               

               
Conread position:
               
71-317
               

               
Cow position:
               
chr6:60057733-60057492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 35
               

               
Conread position:
               
71-317
               

               
Cow position:
               
chr6:66131226-66131471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
62, 145
               

               
Conread position:
               
71-320
               

               
Cow position:
               
chr6:4692058-4691806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 21
               

               
Conread position:
               
71-325
               

               
Cow position:
               
chr6:65870950-65871211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
86, 164
               

               
Conread position:
               
71-330
               

               
Cow position:
               
chr6:7539496-7539754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
52, 24
               

               
Conread position:
               
71-330
               

               
Cow position:
               
chr6:21514693-21514424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
57, 174
               

               
Conread position:
               
71-330
               

               
Cow position:
               
chr6:27888271-27888528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
89, 34
               

               
Conread position:
               
71-330
               

               
Cow position:
               
chr6:33302331-33302577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
178, 81
               

               
Conread position:
               
71-330
               

               
Cow position:
               
chr6:35842575-35842841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
90, 69
               

               
Conread position:
               
72-200
               

               
Cow position:
               
chr6:49685505-49685634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
95, 87
               

               
Conread position:
               
72-209
               

               
Cow position:
               
chr6:62479243-62479102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
27, 99
               

               
Conread position:
               
72-218
               

               
Cow position:
               
chr6:60239467-60239328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
72-253
               

               
Cow position:
               
chr6:48169867-48170040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
179, 49
               

               
Conread position:
               
72-291
               

               
Cow position:
               
chr6:18988134-18988349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
58, 90
               

               
Conread position:
               
72-291
               

               
Cow position:
               
chr6:49002812-49002599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
77, 129
               

               
Conread position:
               
72-294
               

               
Cow position:
               
chr6:4864627-4864403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
97, 157
               

               
Conread position:
               
72-300
               

               
Cow position:
               
chr6:8788116-8787887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
95, 69
               

               
Conread position:
               
72-300
               

               
Cow position:
               
chr6:57164348-57164575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
96, 154
               

               
Conread position:
               
72-307
               

               
Cow position:
               
chr6:377051-377278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
144, 51
               

               
Conread position:
               
72-311
               

               
Cow position:
               
chr6:12652128-12652363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
29, 67
               

               
Conread position:
               
72-312
               

               
Cow position:
               
chr6:15300897-15300673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
179, 52
               

               
Conread position:
               
72-312
               

               
Cow position:
               
chr6:35181336-35181095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
88, 27
               

               
Conread position:
               
72-313
               

               
Cow position:
               
chr6:8599926-8600159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
179, 77
               

               
Conread position:
               
72-314
               

               
Cow position:
               
chr6:35103412-35103164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 161
               

               
Conread position:
               
72-315
               

               
Cow position:
               
chr6:3592323-3592562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
89, 34
               

               
Conread position:
               
72-315
               

               
Cow position:
               
chr6:10399979-10399750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
72-315
               

               
Cow position:
               
chr6:19996540-19996777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
179, 43
               

               
Conread position:
               
72-315
               

               
Cow position:
               
chr6:60819437-60819677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
179, 77
               

               
Conread position:
               
72-315
               

               
Cow position:
               
chr6:65264617-65264381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
179, 90
               

               
Conread position:
               
72-316
               

               
Cow position:
               
chr6:17997393-17997153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
179, 50
               

               
Conread position:
               
72-316
               

               
Cow position:
               
chr6:38441097-38441338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 90
               

               
Conread position:
               
72-316
               

               
Cow position:
               
chr6:67214666-67214915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
86, 70
               

               
Conread position:
               
72-316
               

               
Cow position:
               
chr6:68049358-68049584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
238, 52
               

               
Conread position:
               
72-317
               

               
Cow position:
               
chr6:29239861-29240106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
95, 154
               

               
Conread position:
               
72-320
               

               
Cow position:
               
chr6:61631687-61631438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
179, 90
               

               
Conread position:
               
72-327
               

               
Cow position:
               
chr6:14949557-14949304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
82, 46
               

               
Conread position:
               
72-328
               

               
Cow position:
               
chr6:16288131-16287884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
179, 86
               

               
Conread position:
               
72-329
               

               
Cow position:
               
chr6:53932925-53932665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
143, 34
               

               
Conread position:
               
72-330
               

               
Cow position:
               
chr6:19401778-19402026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
157, 24
               

               
Conread position:
               
72-330
               

               
Cow position:
               
chr6:21590612-21590886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
54, 172
               

               
Conread position:
               
72-330
               

               
Cow position:
               
chr6:28482941-28483198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
179, 88
               

               
Conread position:
               
72-330
               

               
Cow position:
               
chr6:34475630-34475377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
179, 66
               

               
Conread position:
               
72-330
               

               
Cow position:
               
chr6:35726017-35726271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
66, 78
               

               
Conread position:
               
72-330
               

               
Cow position:
               
chr6:37149109-37149367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 157
               

               
Conread position:
               
72-330
               

               
Cow position:
               
chr6:38609890-38610155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
179, 79
               

               
Conread position:
               
72-330
               

               
Cow position:
               
chr6:46557975-46558235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
87, 69
               

               
Conread position:
               
72-330
               

               
Cow position:
               
chr6:54365409-54365148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
86, 158
               

               
Conread position:
               
72-330
               

               
Cow position:
               
chr6:67323238-67323487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
179, 38
               

               
Conread position:
               
73-196
               

               
Cow position:
               
chr6:18968858-18968735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
73-201
               

               
Cow position:
               
chr6:19351232-19351106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
73-208
               

               
Cow position:
               
chr6:45160372-45160241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
73-208
               

               
Cow position:
               
chr6:58076152-58076287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
85, 56
               

               
Conread position:
               
73-212
               

               
Cow position:
               
chr6:16411113-16411252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
73-218
               

               
Cow position:
               
chr6:36928577-36928728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
73-222
               

               
Cow position:
               
chr6:6995033-6994880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
73-244
               

               
Cow position:
               
chr6:44099009-44099178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
77, 90
               

               
Conread position:
               
73-244
               

               
Cow position:
               
chr6:52248209-52248040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
54, 74
               

               
Conread position:
               
73-249
               

               
Cow position:
               
chr6:28283788-28283958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
73-249
               

               
Cow position:
               
chr6:54365081-54364895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
87, 166
               

               
Conread position:
               
73-255
               

               
Cow position:
               
chr6:12543011-12542827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
94, 158
               

               
Conread position:
               
73-259
               

               
Cow position:
               
chr6:3929240-3929426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
95, 164
               

               
Conread position:
               
73-277
               

               
Cow position:
               
chr6:25008632-25008848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
87, 68
               

               
Conread position:
               
73-294
               

               
Cow position:
               
chr6:14958423-14958196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
73-295
               

               
Cow position:
               
chr6:17090521-17090743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
80, 109
               

               
Conread position:
               
73-299
               

               
Cow position:
               
chr6:12337909-12338148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
26, 172
               

               
Conread position:
               
73-299
               

               
Cow position:
               
chr6:58073970-58074197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
86, 60
               

               
Conread position:
               
73-302
               

               
Cow position:
               
chr6:66874272-66874501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
89, 125
               

               
Conread position:
               
73-303
               

               
Cow position:
               
chr6:9008689-9008459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
178, 93
               

               
Conread position:
               
73-307
               

               
Cow position:
               
chr6:54991081-54990844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
93, 157
               

               
Conread position:
               
73-308
               

               
Cow position:
               
chr6:6343349-6343587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
34, 70
               

               
Conread position:
               
73-308
               

               
Cow position:
               
chr6:54573166-54573418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
70, 177
               

               
Conread position:
               
73-310
               

               
Cow position:
               
chr6:37462944-37463183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
92, 44
               

               
Conread position:
               
73-312
               

               
Cow position:
               
chr6:60667342-60667571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
178, 76
               

               
Conread position:
               
73-313
               

               
Cow position:
               
chr6:10612781-10613004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
78, 20
               

               
Conread position:
               
73-313
               

               
Cow position:
               
chr6:12669027-12669257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
178, 42
               

               
Conread position:
               
73-313
               

               
Cow position:
               
chr6:21234966-21235206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
76, 49
               

               
Conread position:
               
73-314
               

               
Cow position:
               
chr6:38771208-38771444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
178, 83
               

               
Conread position:
               
73-314
               

               
Cow position:
               
chr6:59069702-59069456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
29, 35
               

               
Conread position:
               
73-315
               

               
Cow position:
               
chr6:6067769-6067536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
178, 55
               

               
Conread position:
               
73-315
               

               
Cow position:
               
chr6:12092071-12091827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
178, 155
               

               
Conread position:
               
73-315
               

               
Cow position:
               
chr6:51835320-51835561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
85, 129
               

               
Conread position:
               
73-315
               

               
Cow position:
               
chr6:67950875-67951114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
88, 37
               

               
Conread position:
               
73-316
               

               
Cow position:
               
chr6:2623704-2623940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
177, 86
               

               
Conread position:
               
73-316
               

               
Cow position:
               
chr6:9751123-9750890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
178, 32
               

               
Conread position:
               
73-316
               

               
Cow position:
               
chr6:16764730-16764480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
132, 44
               

               
Conread position:
               
73-316
               

               
Cow position:
               
chr6:23532586-23532820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
97, 33
               

               
Conread position:
               
73-316
               

               
Cow position:
               
chr6:35990311-35990068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 47
               

               
Conread position:
               
73-316
               

               
Cow position:
               
chr6:47574827-47575072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
21, 156
               

               
Conread position:
               
73-317
               

               
Cow position:
               
chr6:51968989-51969243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
75, 152
               

               
Conread position:
               
73-320
               

               
Cow position:
               
chr6:3952440-3952688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
178, 162
               

               
Conread position:
               
73-320
               

               
Cow position:
               
chr6:9219195-9219436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
96, 78
               

               
Conread position:
               
73-320
               

               
Cow position:
               
chr6:15242758-15243006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 24
               

               
Conread position:
               
73-320
               

               
Cow position:
               
chr6:15243178-15243425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
96, 32
               

               
Conread position:
               
73-320
               

               
Cow position:
               
chr6:15447281-15447028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 167
               

               
Conread position:
               
73-320
               

               
Cow position:
               
chr6:38207569-38207322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
91, 67
               

               
Conread position:
               
73-320
               

               
Cow position:
               
chr6:50984148-50984390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
178, 54
               

               
Conread position:
               
73-323
               

               
Cow position:
               
chr6:19292721-19292970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
89, 49
               

               
Conread position:
               
73-323
               

               
Cow position:
               
chr6:38641416-38641668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
95, 157
               

               
Conread position:
               
73-326
               

               
Cow position:
               
chr6:17549059-17548797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
88, 169
               

               
Conread position:
               
73-328
               

               
Cow position:
               
chr6:32121833-32122074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
87, 51
               

               
Conread position:
               
73-329
               

               
Cow position:
               
chr6:5114123-5113875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
188, 53
               

               
Conread position:
               
73-329
               

               
Cow position:
               
chr6:10225717-10225478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
178, 65
               

               
Conread position:
               
73-329
               

               
Cow position:
               
chr6:66531899-66531643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
93, 60
               

               
Conread position:
               
73-330
               

               
Cow position:
               
chr6:1703740-1703978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
176, 61
               

               
Conread position:
               
73-330
               

               
Cow position:
               
chr6:8562642-8562899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
85, 156
               

               
Conread position:
               
73-330
               

               
Cow position:
               
chr6:11246685-11246949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
88, 138
               

               
Conread position:
               
73-330
               

               
Cow position:
               
chr6:13565006-13565268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
88, 138
               

               
Conread position:
               
73-330
               

               
Cow position:
               
chr6:15937929-15937671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
178, 64
               

               
Conread position:
               
73-330
               

               
Cow position:
               
chr6:40032115-40032368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 52
               

               
Conread position:
               
73-330
               

               
Cow position:
               
chr6:40774430-40774154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
35, 173
               

               
Conread position:
               
73-330
               

               
Cow position:
               
chr6:48803714-48803460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
87, 167
               

               
Conread position:
               
73-330
               

               
Cow position:
               
chr6:57571399-57571659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
29, 169
               

               
Conread position:
               
73-330
               

               
Cow position:
               
chr6:58370676-58370928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
86, 168
               

               
Conread position:
               
73-330
               

               
Cow position:
               
chr6:59104524-59104780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
18, 68
               

               
Conread position:
               
74-199
               

               
Cow position:
               
chr6:48344255-48344381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
104, 88
               

               
Conread position:
               
74-208
               

               
Cow position:
               
chr6:5958097-5957971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
74-218
               

               
Cow position:
               
chr6:38233881-38234026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
74-234
               

               
Cow position:
               
chr6:44984253-44984416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
74-240
               

               
Cow position:
               
chr6:28148758-28148923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
74-244
               

               
Cow position:
               
chr6:8804607-8804439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
85, 142
               

               
Conread position:
               
74-257
               

               
Cow position:
               
chr6:31854278-31854460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
177, 83
               

               
Conread position:
               
74-284
               

               
Cow position:
               
chr6:28318327-28318530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
177, 86
               

               
Conread position:
               
74-289
               

               
Cow position:
               
chr6:28156224-28156024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
177, 52
               

               
Conread position:
               
74-295
               

               
Cow position:
               
chr6:7190197-7189974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
21, 110
               

               
Conread position:
               
74-303
               

               
Cow position:
               
chr6:31564416-31564185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
86, 129
               

               
Conread position:
               
74-305
               

               
Cow position:
               
chr6:27815551-27815315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
95, 27
               

               
Conread position:
               
74-305
               

               
Cow position:
               
chr6:60442342-60442562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
177, 86
               

               
Conread position:
               
74-306
               

               
Cow position:
               
chr6:1429561-1429795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
25, 19
               

               
Conread position:
               
74-307
               

               
Cow position:
               
chr6:20196371-20196146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
177, 59
               

               
Conread position:
               
74-308
               

               
Cow position:
               
chr6:45065092-45064860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
177, 21
               

               
Conread position:
               
74-313
               

               
Cow position:
               
chr6:30973974-30974199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
177, 31
               

               
Conread position:
               
74-314
               

               
Cow position:
               
chr6:31635767-31635519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
87, 35
               

               
Conread position:
               
74-314
               

               
Cow position:
               
chr6:63299109-63298868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
92, 151
               

               
Conread position:
               
74-315
               

               
Cow position:
               
chr6:23025190-23024936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
64, 164
               

               
Conread position:
               
74-315
               

               
Cow position:
               
chr6:46173329-46173095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
177, 74
               

               
Conread position:
               
74-315
               

               
Cow position:
               
chr6:47339430-47339191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 31
               

               
Conread position:
               
74-315
               

               
Cow position:
               
chr6:51526415-51526653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
177, 84
               

               
Conread position:
               
74-315
               

               
Cow position:
               
chr6:54867437-54867682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 157
               

               
Conread position:
               
74-316
               

               
Cow position:
               
chr6:528351-528117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
177, 31
               

               
Conread position:
               
74-316
               

               
Cow position:
               
chr6:582349-582107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 158
               

               
Conread position:
               
74-316
               

               
Cow position:
               
chr6:17557305-17557548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
81, 96
               

               
Conread position:
               
74-316
               

               
Cow position:
               
chr6:44194619-44194384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
177, 52
               

               
Conread position:
               
74-320
               

               
Cow position:
               
chr6:4389831-4390084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
132, 75
               

               
Conread position:
               
74-320
               

               
Cow position:
               
chr6:60850462-60850212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
131, 88
               

               
Conread position:
               
74-327
               

               
Cow position:
               
chr6:6264565-6264830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
19, 42
               

               
Conread position:
               
74-328
               

               
Cow position:
               
chr6:10487510-10487761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
88, 166
               

               
Conread position:
               
74-328
               

               
Cow position:
               
chr6:36652341-36652599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
28, 21
               

               
Conread position:
               
74-329
               

               
Cow position:
               
chr6:5095624-5095359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 159
               

               
Conread position:
               
74-329
               

               
Cow position:
               
chr6:32287561-32287811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
109, 155
               

               
Conread position:
               
74-330
               

               
Cow position:
               
chr6:143446-143197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
176, 46
               

               
Conread position:
               
74-330
               

               
Cow position:
               
chr6:4559381-4559133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
92, 77
               

               
Conread position:
               
74-330
               

               
Cow position:
               
chr6:23402067-23401814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 87
               

               
Conread position:
               
74-330
               

               
Cow position:
               
chr6:27240083-27239823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
80, 91
               

               
Conread position:
               
74-330
               

               
Cow position:
               
chr6:40713577-40713328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
233, 87
               

               
Conread position:
               
74-330
               

               
Cow position:
               
chr6:41375693-41375951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
89, 75
               

               
Conread position:
               
74-330
               

               
Cow position:
               
chr6:44078440-44078696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
90, 141
               

               
Conread position:
               
74-330
               

               
Cow position:
               
chr6:44867617-44867362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
177, 87
               

               
Conread position:
               
75-246
               

               
Cow position:
               
chr6:57405199-57405031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
75-289
               

               
Cow position:
               
chr6:63272684-63272473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
92, 30
               

               
Conread position:
               
75-303
               

               
Cow position:
               
chr6:33929626-33929394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
92, 154
               

               
Conread position:
               
75-308
               

               
Cow position:
               
chr6:34196226-34195991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
120, 87
               

               
Conread position:
               
75-316
               

               
Cow position:
               
chr6:60739940-60740180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 86
               

               
Conread position:
               
75-320
               

               
Cow position:
               
chr6:28148176-28148425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
83, 157
               

               
Conread position:
               
75-330
               

               
Cow position:
               
chr6:6063366-6063111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
176, 74
               

               
Conread position:
               
75-330
               

               
Cow position:
               
chr6:19695731-19695990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
53, 98
               

               
Conread position:
               
75-330
               

               
Cow position:
               
chr6:32268952-32268706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
176, 70
               

               
Conread position:
               
76-308
               

               
Cow position:
               
chr6:53519698-53519467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
64, 87
               

               
Conread position:
               
76-315
               

               
Cow position:
               
chr6:36189623-36189862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
175, 144
               

               
Conread position:
               
76-317
               

               
Cow position:
               
chr6:17794834-17794597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
175, 33
               

               
Conread position:
               
76-328
               

               
Cow position:
               
chr6:18447585-18447336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
29, 73
               

               
Conread position:
               
76-330
               

               
Cow position:
               
chr6:37395483-37395222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 159
               

               
Conread position:
               
76-330
               

               
Cow position:
               
chr6:67187609-67187862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
92, 33
               

               
Conread position:
               
76-331
               

               
Cow position:
               
chr6:1770273-1770012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
177, 152
               

               
Conread position:
               
77-316
               

               
Cow position:
               
chr6:64431861-64432104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
77-330
               

               
Cow position:
               
chr6:32867285-32867039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
87, 32
               

               
Conread position:
               
78-302
               

               
Cow position:
               
chr6:26450244-26450465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
173, 65
               

               
Conread position:
               
78-308
               

               
Cow position:
               
chr6:35435917-35436153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
13, 154
               

               
Conread position:
               
78-315
               

               
Cow position:
               
chr6:59631998-59631757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
15, 85
               

               
Conread position:
               
78-316
               

               
Cow position:
               
chr6:23353480-23353714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
173, 86
               

               
Conread position:
               
78-316
               

               
Cow position:
               
chr6:53841576-53841340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
160, 83
               

               
Conread position:
               
78-327
               

               
Cow position:
               
chr6:7128480-7128226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
34, 161
               

               
Conread position:
               
78-327
               

               
Cow position:
               
chr6:62929420-62929676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
18, 110
               

               
Conread position:
               
78-329
               

               
Cow position:
               
chr6:457107-457351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
83, 17
               

               
Conread position:
               
78-330
               

               
Cow position:
               
chr6:6060640-6060389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
173, 60
               

               
Conread position:
               
78-330
               

               
Cow position:
               
chr6:32125991-32126233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
183, 31
               

               
Conread position:
               
79-320
               

               
Cow position:
               
chr6:60474057-60474300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
13, 150
               

               
Conread position:
               
81-307
               

               
Cow position:
               
chr6:11169628-11169860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
72, 139
               

               
Conread position:
               
82-229
               

               
Cow position:
               
chr6:40761056-40761203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
82-330
               

               
Cow position:
               
chr6:17068719-17068471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
9, 146
               

               
Conread position:
               
83-315
               

               
Cow position:
               
chr6:61142632-61142396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
83, 147
               

               
Conread position:
               
85-217
               

               
Cow position:
               
chr6:57298952-57299081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
85-246
               

               
Cow position:
               
chr6:26765080-26764924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
75, 61
               

               
Conread position:
               
85-291
               

               
Cow position:
               
chr6:59718730-59718937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
74, 142
               

               
Conread position:
               
85-301
               

               
Cow position:
               
chr6:6673038-6673258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
162, 81
               

               
Conread position:
               
85-302
               

               
Cow position:
               
chr6:5302482-5302268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
45, 39
               

               
Conread position:
               
85-303
               

               
Cow position:
               
chr6:62669803-62670018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
166, 35
               

               
Conread position:
               
85-305
               

               
Cow position:
               
chr6:38218605-38218821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
166, 35
               

               
Conread position:
               
85-306
               

               
Cow position:
               
chr6:28179012-28178799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
74, 48
               

               
Conread position:
               
85-306
               

               
Cow position:
               
chr6:66375396-66375177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
166, 64
               

               
Conread position:
               
85-312
               

               
Cow position:
               
chr6:58597570-58597344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
77, 35
               

               
Conread position:
               
85-315
               

               
Cow position:
               
chr6:6724437-6724670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
56, 146
               

               
Conread position:
               
85-315
               

               
Cow position:
               
chr6:12964788-12965019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
10, 16
               

               
Conread position:
               
85-315
               

               
Cow position:
               
chr6:47305274-47305504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
74, 39
               

               
Conread position:
               
85-315
               

               
Cow position:
               
chr6:55546243-55546010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
81, 70
               

               
Conread position:
               
85-316
               

               
Cow position:
               
chr6:9302782-9302554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
11, 74
               

               
Conread position:
               
85-319
               

               
Cow position:
               
chr6:6400885-6401119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
72, 120
               

               
Conread position:
               
85-320
               

               
Cow position:
               
chr6:17313668-17313905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
75, 55
               

               
Conread position:
               
85-320
               

               
Cow position:
               
chr6:47799226-47799463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
76, 144
               

               
Conread position:
               
85-323
               

               
Cow position:
               
chr6:9718986-9718741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
78, 121
               

               
Conread position:
               
85-327
               

               
Cow position:
               
chr6:17414514-17414268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
82, 20
               

               
Conread position:
               
85-328
               

               
Cow position:
               
chr6:416033-416303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
85-328
               

               
Cow position:
               
chr6:14914307-14914054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
76, 118
               

               
Conread position:
               
85-329
               

               
Cow position:
               
chr6:22215534-22215290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
113, 67
               

               
Conread position:
               
85-330
               

               
Cow position:
               
chr6:13367225-13367463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
82, 20
               

               
Conread position:
               
85-330
               

               
Cow position:
               
chr6:24468457-24468218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
167, 66
               

               
Conread position:
               
85-330
               

               
Cow position:
               
chr6:41733561-41733816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
76, 53
               

               
Conread position:
               
85-330
               

               
Cow position:
               
chr6:57546286-57546045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
75, 57
               

               
Conread position:
               
85-330
               

               
Cow position:
               
chr6:67643757-67643508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
164, 143
               

               
Conread position:
               
86-312
               

               
Cow position:
               
chr6:25407455-25407230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
165, 65
               

               
Conread position:
               
86-329
               

               
Cow position:
               
chr6:56849947-56850197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
72, 156
               

               
Conread position:
               
86-330
               

               
Cow position:
               
chr6:18118117-18117870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
71, 144
               

               
Conread position:
               
86-330
               

               
Cow position:
               
chr6:23695929-23696180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
66, 160
               

               
Conread position:
               
87-296
               

               
Cow position:
               
chr6:51893564-51893354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
27, 81
               

               
Conread position:
               
87-303
               

               
Cow position:
               
chr6:55475188-55475408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
14, 142
               

               
Conread position:
               
87-315
               

               
Cow position:
               
chr6:8161756-8161523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
111, 62
               

               
Conread position:
               
87-316
               

               
Cow position:
               
chr6:35896404-35896186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
78, 54
               

               
Conread position:
               
87-317
               

               
Cow position:
               
chr6:60468173-60468394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
70, 149
               

               
Conread position:
               
87-330
               

               
Cow position:
               
chr6:52478478-52478230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
64, 144
               

               
Conread position:
               
87-330
               

               
Cow position:
               
chr6:61269246-61269492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
75, 150
               

               
Conread position:
               
88-321
               

               
Cow position:
               
chr6:68816104-68816337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
74, 18
               

               
Conread position:
               
88-327
               

               
Cow position:
               
chr6:35319195-35318955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
7, 28
               

               
Conread position:
               
90-306
               

               
Cow position:
               
chr6:46865650-46865436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
161, 58
               

               
Conread position:
               
90-306
               

               
Cow position:
               
chr6:52901173-52901394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
63, 142
               

               
Conread position:
               
90-309
               

               
Cow position:
               
chr6:51399023-51399238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
165, 66
               

               
Conread position:
               
90-315
               

               
Cow position:
               
chr6:17954310-17954085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
101, 48
               

               
Conread position:
               
90-330
               

               
Cow position:
               
chr6:120181-120423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
22, 122
               

               
Conread position:
               
90-331
               

               
Cow position:
               
chr6:5845233-5844986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
65, 139
               

               
Conread position:
               
91-314
               

               
Cow position:
               
chr6:59603271-59603044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
67, 136
               

               
Conread position:
               
91-330
               

               
Cow position:
               
chr6:68652411-68652171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
74, 5
               

               
Conread position:
               
92-315
               

               
Cow position:
               
chr6:51530245-51530023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
36, 65
               

               
Conread position:
               
93-315
               

               
Cow position:
               
chr6:67618011-67617784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
32, 78
               

               
Conread position:
               
93-316
               

               
Cow position:
               
chr6:18144135-18144363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
115, 33
               

               
Conread position:
               
94-307
               

               
Cow position:
               
chr6:60516769-60516982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
38, 11
               

               
Conread position:
               
94-330
               

               
Cow position:
               
chr6:2078876-2078635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
59, 11
               

               
Conread position:
               
95-294
               

               
Cow position:
               
chr6:17527644-17527445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
167, 113
               

               
Conread position:
               
95-331
               

               
Cow position:
               
chr6:48010576-48010342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
156, 45
               

               
Conread position:
               
96-219
               

               
Cow position:
               
chr6:30688670-30688547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
96-314
               

               
Cow position:
               
chr6:16352401-16352190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
153, 10
               

               
Conread position:
               
96-328
               

               
Cow position:
               
chr6:66590026-66590250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
62, 73
               

               
Conread position:
               
97-249
               

               
Cow position:
               
chr6:46292401-46292251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
69, 62
               

               
Conread position:
               
97-315
               

               
Cow position:
               
chr6:54036193-54035978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
154, 46
               

               
Conread position:
               
97-329
               

               
Cow position:
               
chr6:65903674-65903447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
154, 40
               

               
Conread position:
               
97-330
               

               
Cow position:
               
chr6:60274066-60273829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
25, 44
               

               
Conread position:
               
98-331
               

               
Cow position:
               
chr6:18608868-18608628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
91, 53
               

               
Conread position:
               
99-314
               

               
Cow position:
               
chr6:21736940-21736729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
58, 112
               

               
Conread position:
               
101-303
               

               
Cow position:
               
chr6:51294234-51294438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
17, 5
               

               
Conread position:
               
101-315
               

               
Cow position:
               
chr6:53145732-53145518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
150, 6
               

               
Conread position:
               
101-330
               

               
Cow position:
               
chr6:10106034-10105799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
6, 140
               

               
Conread position:
               
102-316
               

               
Cow position:
               
chr6:5609496-5609281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
6, 105
               

               
Conread position:
               
109-315
               

               
Cow position:
               
chr6:56986687-56986486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
142, 49
               

               
Conread position:
               
109-323
               

               
Cow position:
               
chr6:19446211-19446425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
136, 118
               

               
Conread position:
               
109-328
               

               
Cow position:
               
chr6:47958770-47958988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
52, 102
               

               
Conread position:
               
110-208
               

               
Cow position:
               
chr6:31928281-31928381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
101
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
110-268
               

               
Cow position:
               
chr6:28973076-28972918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
141, 53
               

               
Conread position:
               
110-303
               

               
Cow position:
               
chr6:16706970-16707165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
45, 118
               

               
Conread position:
               
110-306
               

               
Cow position:
               
chr6:28977085-28976884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
47, 122
               

               
Conread position:
               
110-320
               

               
Cow position:
               
chr6:7801435-7801228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
12, 19
               

               
Conread position:
               
110-328
               

               
Cow position:
               
chr6:36454632-36454414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
141, 46
               

               
Conread position:
               
111-315
               

               
Cow position:
               
chr6:22850290-22850090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
140, 50
               

               
Conread position:
               
111-319
               

               
Cow position:
               
chr6:38640191-38640402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
58, 127
               

               
Conread position:
               
112-291
               

               
Cow position:
               
chr6:48468965-48469141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
49, 24
               

               
Conread position:
               
112-295
               

               
Cow position:
               
chr6:7119659-7119474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
48, 117
               

               
Conread position:
               
112-303
               

               
Cow position:
               
chr6:44623568-44623763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
47, 118
               

               
Conread position:
               
112-316
               

               
Cow position:
               
chr6:55535788-55535586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
138, 113
               

               
Conread position:
               
112-330
               

               
Cow position:
               
chr6:611511-611724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
53, 29
               

               
Conread position:
               
112-330
               

               
Cow position:
               
chr6:55417566-55417352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
87, 50
               

               
Conread position:
               
114-315
               

               
Cow position:
               
chr6:37783364-37783565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
26, 10
               

               
Conread position:
               
114-328
               

               
Cow position:
               
chr6:2584904-2585120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
50, 115
               

               
Conread position:
               
117-284
               

               
Cow position:
               
chr6:65846160-65845997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
134, 67
               

               
Conread position:
               
118-259
               

               
Cow position:
               
chr6:54140763-54140905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
97, 118
               

               
Conread position:
               
118-313
               

               
Cow position:
               
chr6:3329954-3330156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
35, 45
               

               
Conread position:
               
118-315
               

               
Cow position:
               
chr6:8094324-8094113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
45, 112
               

               
Conread position:
               
120-315
               

               
Cow position:
               
chr6:6201397-6201589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
131, 30
               

               
Conread position:
               
120-320
               

               
Cow position:
               
chr6:19131398-19131600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
41, 107
               

               
Conread position:
               
122-302
               

               
Cow position:
               
chr6:41656073-41655890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
40, 108
               

               
Conread position:
               
123-295
               

               
Cow position:
               
chr6:47885050-47884885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
128, 40
               

               
Conread position:
               
123-313
               

               
Cow position:
               
chr6:57287688-57287500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
43, 17
               

               
Conread position:
               
126-303
               

               
Cow position:
               
chr6:51086045-51086217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
125, 35
               

               
Conread position:
               
126-307
               

               
Cow position:
               
chr6:67451398-67451214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
36, 104
               

               
Conread position:
               
126-316
               

               
Cow position:
               
chr6:41015002-41014813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
124, 25
               

               
Conread position:
               
127-327
               

               
Cow position:
               
chr6:57089172-57089382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
40, 113
               

               
Conread position:
               
129-306
               

               
Cow position:
               
chr6:55502743-55502922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
28, 98
               

               
Conread position:
               
129-314
               

               
Cow position:
               
chr6:17527384-17527198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
122, 41
               

               
Conread position:
               
135-299
               

               
Cow position:
               
chr6:13053778-13053946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
78, 94
               

               
Conread position:
               
136-303
               

               
Cow position:
               
chr6:1103752-1103587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
115, 25
               

               
Conread position:
               
136-330
               

               
Cow position:
               
chr6:20219794-20219593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
24, 100
               

               
Conread position:
               
139-330
               

               
Cow position:
               
chr6:8688863-8688669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
21, 105
               

               
Conread position:
               
140-315
               

               
Cow position:
               
chr6:32453375-32453549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
111, 23
               

               
Conread position:
               
141-330
               

               
Cow position:
               
chr6:21475713-21475908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
18, 91
               

               
Conread position:
               
144-305
               

               
Cow position:
               
chr6:61824407-61824563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
107, 26
               

               
Conread position:
               
145-316
               

               
Cow position:
               
chr6:60451425-60451594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
106, 17
               

               
Conread position:
               
145-330
               

               
Cow position:
               
chr6:48379622-48379430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
24, 85
               

               
Conread position:
               
146-297
               

               
Cow position:
               
chr6:36011901-36012049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
105, 17
               

               
Conread position:
               
147-320
               

               
Cow position:
               
chr6:1002267-1002093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
104, 81
               

               
Conread position:
               
148-314
               

               
Cow position:
               
chr6:55297098-55296931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
115, 80
               

               
Conread position:
               
148-316
               

               
Cow position:
               
chr6:10488270-10488107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
113, 14
               

               
Conread position:
               
148-330
               

               
Cow position:
               
chr6:47245778-47245963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
23, 13
               

               
Conread position:
               
152-320
               

               
Cow position:
               
chr6:1475345-1475514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
15, 77
               

               
Conread position:
               
153-315
               

               
Cow position:
               
chr6:14063308-14063137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
155-320
               

               
Cow position:
               
chr6:42483420-42483582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
96, 11
               

               
Conread position:
               
156-330
               

               
Cow position:
               
chr6:55548532-55548352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
16, 86
               

               
Conread position:
               
157-307
               

               
Cow position:
               
chr6:43787903-43787754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
94, 13
               

               
Conread position:
               
157-330
               

               
Cow position:
               
chr6:21467259-21467084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
9, 61
               

               
Conread position:
               
158-316
               

               
Cow position:
               
chr6:49096443-49096288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
99, 9
               

               
Conread position:
               
158-319
               

               
Cow position:
               
chr6:41937267-41937102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
12, 125
               

               
Conread position:
               
158-330
               

               
Cow position:
               
chr6:8731415-8731596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
47, 83
               

               
Conread position:
               
158-330
               

               
Cow position:
               
chr6:58304421-58304597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
93, 70
               

               
Conread position:
               
159-313
               

               
Cow position:
               
chr6:67806007-67805852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
92, 69
               

               
Conread position:
               
159-315
               

               
Cow position:
               
chr6:16380552-16380709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
21, 16
               

               
Conread position:
               
162-315
               

               
Cow position:
               
chr6:23610953-23611102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
89, 73
               

               
Conread position:
               
162-315
               

               
Cow position:
               
chr6:48435846-48435994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
89, 13
               

               
Conread position:
               
163-320
               

               
Cow position:
               
chr6:69153425-69153579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
88, 35
               

               
Conread position:
               
163-322
               

               
Cow position:
               
chr6:7568135-7568295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
32, 73
               

               
Conread position:
               
163-330
               

               
Cow position:
               
chr6:21587418-21587253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
98, 65
               

               
Conread position:
               
163-330
               

               
Cow position:
               
chr6:33450958-33450796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
88, 60
               

               
Conread position:
               
163-330
               

               
Cow position:
               
chr6:35171617-35171788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
99, 63
               

               
Conread position:
               
163-330
               

               
Cow position:
               
chr6:37692763-37692931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
88, 40
               

               
Conread position:
               
163-330
               

               
Cow position:
               
chr6:57079435-57079607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
88, 63
               

               
Conread position:
               
164-330
               

               
Cow position:
               
chr6:9832219-9832383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
86, 64
               

               
Conread position:
               
165-315
               

               
Cow position:
               
chr6:31865112-31865257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
86, 33
               

               
Conread position:
               
165-320
               

               
Cow position:
               
chr6:65535157-65535001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
86, 63
               

               
Conread position:
               
165-330
               

               
Cow position:
               
chr6:54127799-54127640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
167-330
               

               
Cow position:
               
chr6:66947802-66947642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
84, 42
               

               
Conread position:
               
168-320
               

               
Cow position:
               
chr6:60777778-60777939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
31, 75
               

               
Conread position:
               
168-329
               

               
Cow position:
               
chr6:66259747-66259917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
83, 9
               

               
Conread position:
               
170-312
               

               
Cow position:
               
chr6:28089029-28088887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
81, 58
               

               
Conread position:
               
170-315
               

               
Cow position:
               
chr6:50771340-50771198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
81, 41
               

               
Conread position:
               
171-328
               

               
Cow position:
               
chr6:62078943-62079099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
80, 7
               

               
Conread position:
               
171-330
               

               
Cow position:
               
chr6:33150272-33150112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
80, 64
               

               
Conread position:
               
173-319
               

               
Cow position:
               
chr6:21066862-21066714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
37, 64
               

               
Conread position:
               
176-316
               

               
Cow position:
               
chr6:52044914-52044778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
85, 60
               

               
Conread position:
               
178-330
               

               
Cow position:
               
chr6:42728672-42728828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
73, 50
               

               
Conread position:
               
184-320
               

               
Cow position:
               
chr6:19508154-19508018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
67, 9
               

               
Conread position:
               
184-330
               

               
Cow position:
               
chr6:21184190-21184042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
70, 52
               

               
Conread position:
               
185-315
               

               
Cow position:
               
chr6:15587561-15587430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
66, 48
               

               
Conread position:
               
186-315
               

               
Cow position:
               
chr6:8468700-8468830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
65, 50
               

               
Conread position:
               
190-330
               

               
Cow position:
               
chr6:24491067-24491215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
53, 43
               

               
Conread position:
               
191-320
               

               
Cow position:
               
chr6:37603604-37603737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
191-325
               

               
Cow position:
               
chr6:15058416-15058549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
61, 47
               

               
Conread position:
               
192-315
               

               
Cow position:
               
chr6:29853024-29852901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
59, 29
               

               
Conread position:
               
194-320
               

               
Cow position:
               
chr6:58076436-58076563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
57, 42
               

               
Conread position:
               
199-316
               

               
Cow position:
               
chr6:35654502-35654384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
52, 37
               

               
Conread position:
               
217-315
               

               
Cow position:
               
chr6:50882646-50882746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
101
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
34, 0
               
Show alignments to all cow chromosomes.