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Cow genome map

           
Conread name:
           
rcmu25_l1.y1
        

               
Conread position:
               
76-413
               

               
Cow position:
               
chr1:71399149-71399499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
132, 58
               

               
Conread position:
               
77-336
               

               
Cow position:
               
chr1:30418173-30417924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
202, 89
               

               
Conread position:
               
78-256
               

               
Cow position:
               
chr1:71716376-71716552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
109, 92
               

               
Conread position:
               
79-421
               

               
Cow position:
               
chr1:84104188-84103845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
40, 102
               

               
Conread position:
               
82-338
               

               
Cow position:
               
chr1:89835119-89835378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
104, 175
               

               
Conread position:
               
83-236
               

               
Cow position:
               
chr1:70291440-70291592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
83-343
               

               
Cow position:
               
chr1:7022991-7023252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
103, 81
               

               
Conread position:
               
83-344
               

               
Cow position:
               
chr1:95153089-95153354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
45, 150
               

               
Conread position:
               
83-411
               

               
Cow position:
               
chr1:68710141-68710487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
89, 182
               

               
Conread position:
               
84-335
               

               
Cow position:
               
chr1:87936771-87937020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
195, 106
               

               
Conread position:
               
84-413
               

               
Cow position:
               
chr1:71350851-71350519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
209, 68
               

               
Conread position:
               
85-228
               

               
Cow position:
               
chr1:61283924-61284069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
102, 142
               

               
Conread position:
               
85-421
               

               
Cow position:
               
chr1:70428605-70428950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
53, 68
               

               
Conread position:
               
86-237
               

               
Cow position:
               
chr1:68782768-68782612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
86-312
               

               
Cow position:
               
chr1:40482529-40482313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
193, 66
               

               
Conread position:
               
86-420
               

               
Cow position:
               
chr1:49077459-49077111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
102, 41
               

               
Conread position:
               
87-385
               

               
Cow position:
               
chr1:648199-648502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
192, 169
               

               
Conread position:
               
87-402
               

               
Cow position:
               
chr1:49082615-49082940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
108, 195
               

               
Conread position:
               
88-423
               

               
Cow position:
               
chr1:37726539-37726199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 49
               

               
Conread position:
               
88-423
               

               
Cow position:
               
chr1:56618775-56618440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
294, 164
               

               
Conread position:
               
89-344
               

               
Cow position:
               
chr1:77892019-77892268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
190, 65
               

               
Conread position:
               
90-342
               

               
Cow position:
               
chr1:9013417-9013664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
90-344
               

               
Cow position:
               
chr1:81580053-81580309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
98, 43
               

               
Conread position:
               
90-419
               

               
Cow position:
               
chr1:69695114-69694796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 102
               

               
Conread position:
               
91-345
               

               
Cow position:
               
chr1:98594457-98594698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
188, 42
               

               
Conread position:
               
91-384
               

               
Cow position:
               
chr1:101715205-101714907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
97, 82
               

               
Conread position:
               
91-421
               

               
Cow position:
               
chr1:46030838-46031174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
98, 85
               

               
Conread position:
               
92-231
               

               
Cow position:
               
chr1:3955596-3955461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
97, 41
               

               
Conread position:
               
92-234
               

               
Cow position:
               
chr1:10952349-10952205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
92-264
               

               
Cow position:
               
chr1:61724142-61723967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
97, 112
               

               
Conread position:
               
92-282
               

               
Cow position:
               
chr1:92926613-92926795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
92-366
               

               
Cow position:
               
chr1:32001441-32001167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
80, 163
               

               
Conread position:
               
92-398
               

               
Cow position:
               
chr1:5637196-5636882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
90, 180
               

               
Conread position:
               
92-405
               

               
Cow position:
               
chr1:14309156-14308832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
31, 167
               

               
Conread position:
               
92-423
               

               
Cow position:
               
chr1:25734748-25735083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 98
               

               
Conread position:
               
93-401
               

               
Cow position:
               
chr1:102349873-102349566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
93, 165
               

               
Conread position:
               
93-421
               

               
Cow position:
               
chr1:30983610-30983279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 87
               

               
Conread position:
               
93-423
               

               
Cow position:
               
chr1:16962128-16961778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
186, 98
               

               
Conread position:
               
94-336
               

               
Cow position:
               
chr1:3352812-3352576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
185, 60
               

               
Conread position:
               
94-345
               

               
Cow position:
               
chr1:98360516-98360271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
94, 74
               

               
Conread position:
               
94-356
               

               
Cow position:
               
chr1:28176891-28177147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
185, 86
               

               
Conread position:
               
94-413
               

               
Cow position:
               
chr1:31795121-31794802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
174, 39
               

               
Conread position:
               
94-414
               

               
Cow position:
               
chr1:71666051-71665728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
97, 74
               

               
Conread position:
               
94-422
               

               
Cow position:
               
chr1:54156850-54156519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 69
               

               
Conread position:
               
95-330
               

               
Cow position:
               
chr1:42545903-42545661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
88, 165
               

               
Conread position:
               
95-334
               

               
Cow position:
               
chr1:20732592-20732826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
102, 41
               

               
Conread position:
               
95-344
               

               
Cow position:
               
chr1:23512772-23512527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
184, 53
               

               
Conread position:
               
95-414
               

               
Cow position:
               
chr1:89076746-89076417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
184, 83
               

               
Conread position:
               
95-418
               

               
Cow position:
               
chr1:100400313-100399994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
73, 164
               

               
Conread position:
               
95-419
               

               
Cow position:
               
chr1:31765504-31765159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
96-239
               

               
Cow position:
               
chr1:78783435-78783574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
87, 41
               

               
Conread position:
               
96-328
               

               
Cow position:
               
chr1:66430184-66430407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
183, 52
               

               
Conread position:
               
96-344
               

               
Cow position:
               
chr1:26895092-26894840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
98, 49
               

               
Conread position:
               
96-385
               

               
Cow position:
               
chr1:45019918-45019632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
89, 41
               

               
Conread position:
               
96-401
               

               
Cow position:
               
chr1:78809764-78810073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
183, 94
               

               
Conread position:
               
96-417
               

               
Cow position:
               
chr1:2075456-2075141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
183, 76
               

               
Conread position:
               
96-419
               

               
Cow position:
               
chr1:15333768-15334100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 163
               

               
Conread position:
               
96-420
               

               
Cow position:
               
chr1:43340728-43340420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
256, 83
               

               
Conread position:
               
96-421
               

               
Cow position:
               
chr1:68217475-68217153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
98, 37
               

               
Conread position:
               
96-423
               

               
Cow position:
               
chr1:68862917-68863235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
39, 50
               

               
Conread position:
               
96-423
               

               
Cow position:
               
chr1:71119401-71119736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 28
               

               
Conread position:
               
96-423
               

               
Cow position:
               
chr1:94226669-94226328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
31, 75
               

               
Conread position:
               
97-329
               

               
Cow position:
               
chr1:77133645-77133869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
182, 36
               

               
Conread position:
               
97-339
               

               
Cow position:
               
chr1:4027754-4027990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
92, 48
               

               
Conread position:
               
97-384
               

               
Cow position:
               
chr1:93528583-93528867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 99
               

               
Conread position:
               
97-404
               

               
Cow position:
               
chr1:53520796-53521101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 94
               

               
Conread position:
               
97-419
               

               
Cow position:
               
chr1:874535-874874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 162
               

               
Conread position:
               
97-419
               

               
Cow position:
               
chr1:38278149-38277815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 164
               

               
Conread position:
               
97-421
               

               
Cow position:
               
chr1:52435159-52435488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
182, 40
               

               
Conread position:
               
97-421
               

               
Cow position:
               
chr1:67919018-67919342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
92, 32
               

               
Conread position:
               
98-236
               

               
Cow position:
               
chr1:3776726-3776596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
98-253
               

               
Cow position:
               
chr1:73561761-73561607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
97, 50
               

               
Conread position:
               
98-253
               

               
Cow position:
               
chr1:90640917-90641077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
98-276
               

               
Cow position:
               
chr1:60907259-60907439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
42, 159
               

               
Conread position:
               
98-331
               

               
Cow position:
               
chr1:26427976-26427742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
94, 42
               

               
Conread position:
               
98-331
               

               
Cow position:
               
chr1:100706019-100706245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
181, 89
               

               
Conread position:
               
98-343
               

               
Cow position:
               
chr1:5539388-5539145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
90, 39
               

               
Conread position:
               
98-343
               

               
Cow position:
               
chr1:100569040-100569287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
113, 162
               

               
Conread position:
               
98-344
               

               
Cow position:
               
chr1:80422166-80422404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
181, 92
               

               
Conread position:
               
98-348
               

               
Cow position:
               
chr1:4032514-4032768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 161
               

               
Conread position:
               
98-376
               

               
Cow position:
               
chr1:65905118-65904830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
82, 163
               

               
Conread position:
               
98-384
               

               
Cow position:
               
chr1:2976108-2975816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
143, 82
               

               
Conread position:
               
98-384
               

               
Cow position:
               
chr1:71079072-71078789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
181, 85
               

               
Conread position:
               
98-384
               

               
Cow position:
               
chr1:72103735-72104027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
99, 78
               

               
Conread position:
               
98-384
               

               
Cow position:
               
chr1:90864407-90864118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
181, 79
               

               
Conread position:
               
98-399
               

               
Cow position:
               
chr1:79660516-79660210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
181, 81
               

               
Conread position:
               
98-412
               

               
Cow position:
               
chr1:100576154-100575836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
89, 159
               

               
Conread position:
               
98-415
               

               
Cow position:
               
chr1:10655370-10655684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
110, 79
               

               
Conread position:
               
98-415
               

               
Cow position:
               
chr1:23186908-23186595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
93, 37
               

               
Conread position:
               
98-415
               

               
Cow position:
               
chr1:68827019-68826716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
186, 151
               

               
Conread position:
               
98-415
               

               
Cow position:
               
chr1:100450295-100449984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
70, 163
               

               
Conread position:
               
98-418
               

               
Cow position:
               
chr1:484580-484253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 75
               

               
Conread position:
               
98-419
               

               
Cow position:
               
chr1:36998081-36998394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 72
               

               
Conread position:
               
98-420
               

               
Cow position:
               
chr1:29481738-29481415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
46, 81
               

               
Conread position:
               
98-420
               

               
Cow position:
               
chr1:57880900-57880570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
90, 79
               

               
Conread position:
               
98-421
               

               
Cow position:
               
chr1:42398308-42397983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
88, 160
               

               
Conread position:
               
98-421
               

               
Cow position:
               
chr1:52329643-52329308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
55, 166
               

               
Conread position:
               
98-421
               

               
Cow position:
               
chr1:63138727-63139057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
97, 79
               

               
Conread position:
               
98-421
               

               
Cow position:
               
chr1:78091921-78092253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
97, 75
               

               
Conread position:
               
98-421
               

               
Cow position:
               
chr1:79590993-79591317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
181, 79
               

               
Conread position:
               
98-423
               

               
Cow position:
               
chr1:7748106-7748431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
181, 81
               

               
Conread position:
               
98-423
               

               
Cow position:
               
chr1:7752272-7752595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
181, 81
               

               
Conread position:
               
98-423
               

               
Cow position:
               
chr1:63390885-63390549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
91, 161
               

               
Conread position:
               
98-423
               

               
Cow position:
               
chr1:67585434-67585766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
84, 167
               

               
Conread position:
               
98-423
               

               
Cow position:
               
chr1:68845597-68845291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
102, 39
               

               
Conread position:
               
98-423
               

               
Cow position:
               
chr1:97231846-97232186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
93, 35
               

               
Conread position:
               
99-236
               

               
Cow position:
               
chr1:80942434-80942571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
99-242
               

               
Cow position:
               
chr1:6961795-6961937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
62, 92
               

               
Conread position:
               
99-318
               

               
Cow position:
               
chr1:89485462-89485686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
36, 161
               

               
Conread position:
               
99-335
               

               
Cow position:
               
chr1:24876154-24876385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
89, 34
               

               
Conread position:
               
99-336
               

               
Cow position:
               
chr1:8349428-8349200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
180, 52
               

               
Conread position:
               
99-341
               

               
Cow position:
               
chr1:78697882-78697643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 35
               

               
Conread position:
               
99-343
               

               
Cow position:
               
chr1:90976198-90975956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
180, 81
               

               
Conread position:
               
99-343
               

               
Cow position:
               
chr1:97696629-97696875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
88, 162
               

               
Conread position:
               
99-344
               

               
Cow position:
               
chr1:53308501-53308262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
96, 46
               

               
Conread position:
               
99-348
               

               
Cow position:
               
chr1:97938856-97939093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
180, 85
               

               
Conread position:
               
99-384
               

               
Cow position:
               
chr1:49433373-49433088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 31
               

               
Conread position:
               
99-399
               

               
Cow position:
               
chr1:96081373-96081669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 36
               

               
Conread position:
               
99-401
               

               
Cow position:
               
chr1:72813501-72813810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 119
               

               
Conread position:
               
99-404
               

               
Cow position:
               
chr1:33409739-33409427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
27, 103
               

               
Conread position:
               
99-411
               

               
Cow position:
               
chr1:38753807-38754121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
99, 78
               

               
Conread position:
               
99-411
               

               
Cow position:
               
chr1:88926499-88926179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
97, 88
               

               
Conread position:
               
99-414
               

               
Cow position:
               
chr1:64804215-64803891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 62
               

               
Conread position:
               
99-415
               

               
Cow position:
               
chr1:30189033-30189365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
82, 143
               

               
Conread position:
               
99-418
               

               
Cow position:
               
chr1:3323758-3324084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
90, 53
               

               
Conread position:
               
99-418
               

               
Cow position:
               
chr1:65318465-65318787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 38
               

               
Conread position:
               
99-420
               

               
Cow position:
               
chr1:76470542-76470869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
190, 85
               

               
Conread position:
               
99-420
               

               
Cow position:
               
chr1:81228451-81228123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 53
               

               
Conread position:
               
99-422
               

               
Cow position:
               
chr1:92997009-92996672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 69
               

               
Conread position:
               
99-423
               

               
Cow position:
               
chr1:1877917-1878238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
180, 39
               

               
Conread position:
               
99-423
               

               
Cow position:
               
chr1:28563680-28563345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
86, 53
               

               
Conread position:
               
99-423
               

               
Cow position:
               
chr1:34159724-34160044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 69
               

               
Conread position:
               
99-423
               

               
Cow position:
               
chr1:42256616-42256289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
180, 163
               

               
Conread position:
               
99-423
               

               
Cow position:
               
chr1:54199495-54199181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 167
               

               
Conread position:
               
99-423
               

               
Cow position:
               
chr1:74084308-74083973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 153
               

               
Conread position:
               
100-244
               

               
Cow position:
               
chr1:51684689-51684838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
100-244
               

               
Cow position:
               
chr1:82504862-82505007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
54, 92
               

               
Conread position:
               
100-256
               

               
Cow position:
               
chr1:31235039-31234888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
100-261
               

               
Cow position:
               
chr1:22394683-22394851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
100-292
               

               
Cow position:
               
chr1:102647384-102647194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
42, 46
               

               
Conread position:
               
100-303
               

               
Cow position:
               
chr1:4374452-4374246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
30, 69
               

               
Conread position:
               
100-311
               

               
Cow position:
               
chr1:95178842-95179053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
111, 84
               

               
Conread position:
               
100-326
               

               
Cow position:
               
chr1:61543030-61542805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 87
               

               
Conread position:
               
100-327
               

               
Cow position:
               
chr1:37309625-37309404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
179, 56
               

               
Conread position:
               
100-327
               

               
Cow position:
               
chr1:95215293-95215075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
179, 86
               

               
Conread position:
               
100-328
               

               
Cow position:
               
chr1:53495356-53495577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
102, 70
               

               
Conread position:
               
100-329
               

               
Cow position:
               
chr1:53425063-53425294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
72, 91
               

               
Conread position:
               
100-330
               

               
Cow position:
               
chr1:88618484-88618714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
32, 36
               

               
Conread position:
               
100-335
               

               
Cow position:
               
chr1:81582010-81582237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
158, 64
               

               
Conread position:
               
100-343
               

               
Cow position:
               
chr1:69264704-69264939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
179, 37
               

               
Conread position:
               
100-344
               

               
Cow position:
               
chr1:48730937-48730701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
181, 37
               

               
Conread position:
               
100-347
               

               
Cow position:
               
chr1:57297364-57297626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
81, 164
               

               
Conread position:
               
100-348
               

               
Cow position:
               
chr1:57420839-57420600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
179, 91
               

               
Conread position:
               
100-348
               

               
Cow position:
               
chr1:89742108-89741859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
89, 68
               

               
Conread position:
               
100-368
               

               
Cow position:
               
chr1:20002352-20002071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
53, 157
               

               
Conread position:
               
100-382
               

               
Cow position:
               
chr1:76019809-76019526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
26, 155
               

               
Conread position:
               
100-384
               

               
Cow position:
               
chr1:102756541-102756262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
179, 84
               

               
Conread position:
               
100-401
               

               
Cow position:
               
chr1:31348552-31348246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 75
               

               
Conread position:
               
100-409
               

               
Cow position:
               
chr1:55357397-55357088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
179, 86
               

               
Conread position:
               
100-412
               

               
Cow position:
               
chr1:101836934-101837258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
179, 91
               

               
Conread position:
               
100-413
               

               
Cow position:
               
chr1:72011921-72011616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 84
               

               
Conread position:
               
100-414
               

               
Cow position:
               
chr1:21577697-21578016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
106, 77
               

               
Conread position:
               
100-414
               

               
Cow position:
               
chr1:22192652-22192977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
78, 160
               

               
Conread position:
               
100-414
               

               
Cow position:
               
chr1:51445768-51446088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
84, 56
               

               
Conread position:
               
100-414
               

               
Cow position:
               
chr1:96964208-96964526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
179, 75
               

               
Conread position:
               
100-415
               

               
Cow position:
               
chr1:13413917-13414230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
88, 65
               

               
Conread position:
               
100-416
               

               
Cow position:
               
chr1:46030468-46030155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
179, 90
               

               
Conread position:
               
100-416
               

               
Cow position:
               
chr1:101822613-101822295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
179, 56
               

               
Conread position:
               
100-417
               

               
Cow position:
               
chr1:68619045-68618731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
91, 118
               

               
Conread position:
               
100-417
               

               
Cow position:
               
chr1:99609256-99609577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
68, 128
               

               
Conread position:
               
100-418
               

               
Cow position:
               
chr1:10942204-10941887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 37
               

               
Conread position:
               
100-418
               

               
Cow position:
               
chr1:10964182-10964499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 37
               

               
Conread position:
               
100-418
               

               
Cow position:
               
chr1:79165197-79164871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 160
               

               
Conread position:
               
100-419
               

               
Cow position:
               
chr1:6166131-6166444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
89, 33
               

               
Conread position:
               
100-419
               

               
Cow position:
               
chr1:49317608-49317289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
88, 95
               

               
Conread position:
               
100-419
               

               
Cow position:
               
chr1:100551857-100552178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 243
               

               
Conread position:
               
100-420
               

               
Cow position:
               
chr1:21508281-21508608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
81, 29
               

               
Conread position:
               
100-420
               

               
Cow position:
               
chr1:35162297-35162618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
96, 87
               

               
Conread position:
               
100-420
               

               
Cow position:
               
chr1:48444306-48443978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 93
               

               
Conread position:
               
100-420
               

               
Cow position:
               
chr1:66898609-66898282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 75
               

               
Conread position:
               
100-421
               

               
Cow position:
               
chr1:10778454-10778768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 74
               

               
Conread position:
               
100-421
               

               
Cow position:
               
chr1:50931087-50930766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 24
               

               
Conread position:
               
100-421
               

               
Cow position:
               
chr1:55429067-55428740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 37
               

               
Conread position:
               
100-422
               

               
Cow position:
               
chr1:34686078-34686379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
179, 80
               

               
Conread position:
               
100-422
               

               
Cow position:
               
chr1:87095342-87094996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 178
               

               
Conread position:
               
100-422
               

               
Cow position:
               
chr1:95637720-95638051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
96, 45
               

               
Conread position:
               
100-423
               

               
Cow position:
               
chr1:11913989-11913664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
88, 33
               

               
Conread position:
               
100-423
               

               
Cow position:
               
chr1:31934400-31934719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 84
               

               
Conread position:
               
100-423
               

               
Cow position:
               
chr1:33206983-33206658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 60
               

               
Conread position:
               
100-423
               

               
Cow position:
               
chr1:33720007-33720320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
179, 60
               

               
Conread position:
               
100-423
               

               
Cow position:
               
chr1:44506856-44507184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 160
               

               
Conread position:
               
100-423
               

               
Cow position:
               
chr1:63434918-63434582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 87
               

               
Conread position:
               
101-231
               

               
Cow position:
               
chr1:63905583-63905456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
101-249
               

               
Cow position:
               
chr1:47008920-47009069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
88, 75
               

               
Conread position:
               
101-266
               

               
Cow position:
               
chr1:98372523-98372684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
101-269
               

               
Cow position:
               
chr1:100770860-100770697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
147, 83
               

               
Conread position:
               
101-270
               

               
Cow position:
               
chr1:82443567-82443399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
94, 159
               

               
Conread position:
               
101-272
               

               
Cow position:
               
chr1:93228415-93228583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
101-273
               

               
Cow position:
               
chr1:24445739-24445569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
101-276
               

               
Cow position:
               
chr1:57396041-57395874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
101-277
               

               
Cow position:
               
chr1:8984796-8984619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
83, 65
               

               
Conread position:
               
101-283
               

               
Cow position:
               
chr1:95654823-95654643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
178, 37
               

               
Conread position:
               
101-285
               

               
Cow position:
               
chr1:45285547-45285735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
89, 40
               

               
Conread position:
               
101-298
               

               
Cow position:
               
chr1:98310957-98311158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
87, 156
               

               
Conread position:
               
101-314
               

               
Cow position:
               
chr1:43703296-43703511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
94, 83
               

               
Conread position:
               
101-321
               

               
Cow position:
               
chr1:81868837-81868620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
174, 53
               

               
Conread position:
               
101-322
               

               
Cow position:
               
chr1:26702318-26702097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
91, 156
               

               
Conread position:
               
101-322
               

               
Cow position:
               
chr1:89349851-89350075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
97, 72
               

               
Conread position:
               
101-323
               

               
Cow position:
               
chr1:12978569-12978793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
82, 156
               

               
Conread position:
               
101-329
               

               
Cow position:
               
chr1:30047705-30047486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
88, 67
               

               
Conread position:
               
101-331
               

               
Cow position:
               
chr1:9534060-9534280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
22, 84
               

               
Conread position:
               
101-331
               

               
Cow position:
               
chr1:84240781-84240999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
178, 83
               

               
Conread position:
               
101-336
               

               
Cow position:
               
chr1:41115826-41115595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
120, 83
               

               
Conread position:
               
101-336
               

               
Cow position:
               
chr1:75933161-75933389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
85, 124
               

               
Conread position:
               
101-336
               

               
Cow position:
               
chr1:93810318-93810553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
53, 84
               

               
Conread position:
               
101-339
               

               
Cow position:
               
chr1:95176828-95177064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
87, 41
               

               
Conread position:
               
101-341
               

               
Cow position:
               
chr1:85550189-85549950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 89
               

               
Conread position:
               
101-341
               

               
Cow position:
               
chr1:85647893-85647653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
90, 163
               

               
Conread position:
               
101-341
               

               
Cow position:
               
chr1:94261431-94261664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
178, 55
               

               
Conread position:
               
101-342
               

               
Cow position:
               
chr1:52956142-52956379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
84, 156
               

               
Conread position:
               
101-342
               

               
Cow position:
               
chr1:98511817-98512056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
178, 89
               

               
Conread position:
               
101-344
               

               
Cow position:
               
chr1:84255652-84255899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
84, 158
               

               
Conread position:
               
101-344
               

               
Cow position:
               
chr1:91875020-91874785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
188, 83
               

               
Conread position:
               
101-345
               

               
Cow position:
               
chr1:77683246-77683480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
178, 89
               

               
Conread position:
               
101-347
               

               
Cow position:
               
chr1:81613278-81613525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
178, 74
               

               
Conread position:
               
101-348
               

               
Cow position:
               
chr1:34300661-34300415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
178, 89
               

               
Conread position:
               
101-348
               

               
Cow position:
               
chr1:45553355-45553107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
84, 154
               

               
Conread position:
               
101-351
               

               
Cow position:
               
chr1:39069066-39068817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 68
               

               
Conread position:
               
101-353
               

               
Cow position:
               
chr1:4291049-4291305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
86, 151
               

               
Conread position:
               
101-357
               

               
Cow position:
               
chr1:77880847-77880590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
87, 67
               

               
Conread position:
               
101-362
               

               
Cow position:
               
chr1:93554733-93554988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
177, 32
               

               
Conread position:
               
101-368
               

               
Cow position:
               
chr1:47233590-47233324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
95, 78
               

               
Conread position:
               
101-379
               

               
Cow position:
               
chr1:24534365-24534093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
178, 89
               

               
Conread position:
               
101-384
               

               
Cow position:
               
chr1:6826400-6826119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
178, 51
               

               
Conread position:
               
101-384
               

               
Cow position:
               
chr1:19568738-19569028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
77, 147
               

               
Conread position:
               
101-400
               

               
Cow position:
               
chr1:31272552-31272261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
178, 67
               

               
Conread position:
               
101-401
               

               
Cow position:
               
chr1:34856742-34856432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 157
               

               
Conread position:
               
101-403
               

               
Cow position:
               
chr1:86578839-86579164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
57, 165
               

               
Conread position:
               
101-404
               

               
Cow position:
               
chr1:43872442-43872113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
87, 169
               

               
Conread position:
               
101-404
               

               
Cow position:
               
chr1:82337892-82337584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 158
               

               
Conread position:
               
101-411
               

               
Cow position:
               
chr1:3607699-3607998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
177, 89
               

               
Conread position:
               
101-411
               

               
Cow position:
               
chr1:42555151-42555447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
22, 158
               

               
Conread position:
               
101-412
               

               
Cow position:
               
chr1:24542693-24542365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
87, 124
               

               
Conread position:
               
101-412
               

               
Cow position:
               
chr1:53369094-53369401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
130, 61
               

               
Conread position:
               
101-413
               

               
Cow position:
               
chr1:7442872-7443187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 91
               

               
Conread position:
               
101-413
               

               
Cow position:
               
chr1:51394310-51394624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 32
               

               
Conread position:
               
101-414
               

               
Cow position:
               
chr1:14206266-14205957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
89, 32
               

               
Conread position:
               
101-414
               

               
Cow position:
               
chr1:53374320-53374633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 112
               

               
Conread position:
               
101-416
               

               
Cow position:
               
chr1:20950610-20950925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
182, 86
               

               
Conread position:
               
101-416
               

               
Cow position:
               
chr1:81569142-81568820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
88, 73
               

               
Conread position:
               
101-416
               

               
Cow position:
               
chr1:88913207-88913529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 159
               

               
Conread position:
               
101-416
               

               
Cow position:
               
chr1:90621621-90621297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
22, 66
               

               
Conread position:
               
101-417
               

               
Cow position:
               
chr1:37322113-37321800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
85, 162
               

               
Conread position:
               
101-417
               

               
Cow position:
               
chr1:91023579-91023258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
87, 76
               

               
Conread position:
               
101-418
               

               
Cow position:
               
chr1:29627023-29626701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
190, 95
               

               
Conread position:
               
101-418
               

               
Cow position:
               
chr1:48581020-48581338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 85
               

               
Conread position:
               
101-419
               

               
Cow position:
               
chr1:59518809-59519123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 36
               

               
Conread position:
               
101-419
               

               
Cow position:
               
chr1:78794336-78794024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 76
               

               
Conread position:
               
101-419
               

               
Cow position:
               
chr1:84239224-84238908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
88, 138
               

               
Conread position:
               
101-420
               

               
Cow position:
               
chr1:24778097-24777771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
178, 61
               

               
Conread position:
               
101-420
               

               
Cow position:
               
chr1:61391900-61391583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
87, 146
               

               
Conread position:
               
101-421
               

               
Cow position:
               
chr1:11853796-11853473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
178, 91
               

               
Conread position:
               
101-421
               

               
Cow position:
               
chr1:22944137-22943815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
89, 123
               

               
Conread position:
               
101-421
               

               
Cow position:
               
chr1:24133169-24132849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
102, 33
               

               
Conread position:
               
101-421
               

               
Cow position:
               
chr1:48105545-48105211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
71, 126
               

               
Conread position:
               
101-421
               

               
Cow position:
               
chr1:51417661-51417979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
177, 117
               

               
Conread position:
               
101-422
               

               
Cow position:
               
chr1:41696947-41697269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
178, 106
               

               
Conread position:
               
101-422
               

               
Cow position:
               
chr1:45555253-45555580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 76
               

               
Conread position:
               
101-422
               

               
Cow position:
               
chr1:68817910-68817586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
99, 135
               

               
Conread position:
               
101-422
               

               
Cow position:
               
chr1:78838687-78839002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
184, 49
               

               
Conread position:
               
101-422
               

               
Cow position:
               
chr1:101632450-101632137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
92, 156
               

               
Conread position:
               
101-423
               

               
Cow position:
               
chr1:724626-724955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
96, 157
               

               
Conread position:
               
101-423
               

               
Cow position:
               
chr1:6304974-6304661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 86
               

               
Conread position:
               
101-423
               

               
Cow position:
               
chr1:15547359-15547680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 104
               

               
Conread position:
               
101-423
               

               
Cow position:
               
chr1:42482092-42482415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 91
               

               
Conread position:
               
101-423
               

               
Cow position:
               
chr1:53622849-53623172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
178, 59
               

               
Conread position:
               
101-423
               

               
Cow position:
               
chr1:64572402-64572730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 156
               

               
Conread position:
               
101-423
               

               
Cow position:
               
chr1:69539586-69539901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 88
               

               
Conread position:
               
101-423
               

               
Cow position:
               
chr1:86110842-86110529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
178, 78
               

               
Conread position:
               
101-423
               

               
Cow position:
               
chr1:101280827-101280523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
178, 61
               

               
Conread position:
               
102-256
               

               
Cow position:
               
chr1:20544184-20544340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
91, 140
               

               
Conread position:
               
102-256
               

               
Cow position:
               
chr1:43447942-43447786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
46, 143
               

               
Conread position:
               
102-262
               

               
Cow position:
               
chr1:45535595-45535756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
102-288
               

               
Cow position:
               
chr1:79278557-79278372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
89, 102
               

               
Conread position:
               
102-295
               

               
Cow position:
               
chr1:68951517-68951708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
187, 90
               

               
Conread position:
               
102-297
               

               
Cow position:
               
chr1:6788397-6788198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
21, 157
               

               
Conread position:
               
102-309
               

               
Cow position:
               
chr1:55146691-55146895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
21, 85
               

               
Conread position:
               
102-325
               

               
Cow position:
               
chr1:60281259-60281486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
21, 73
               

               
Conread position:
               
102-328
               

               
Cow position:
               
chr1:43822290-43822515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
84, 149
               

               
Conread position:
               
102-328
               

               
Cow position:
               
chr1:73761469-73761245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
83, 115
               

               
Conread position:
               
102-338
               

               
Cow position:
               
chr1:78791415-78791183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
93, 32
               

               
Conread position:
               
102-342
               

               
Cow position:
               
chr1:42360172-42360418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
85, 35
               

               
Conread position:
               
102-342
               

               
Cow position:
               
chr1:90868551-90868317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
177, 85
               

               
Conread position:
               
102-344
               

               
Cow position:
               
chr1:36874903-36875158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
84, 169
               

               
Conread position:
               
102-350
               

               
Cow position:
               
chr1:76436380-76436618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
177, 84
               

               
Conread position:
               
102-354
               

               
Cow position:
               
chr1:74927774-74928024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
89, 35
               

               
Conread position:
               
102-356
               

               
Cow position:
               
chr1:44769224-44768973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
21, 129
               

               
Conread position:
               
102-368
               

               
Cow position:
               
chr1:51769978-51770252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
116, 87
               

               
Conread position:
               
102-368
               

               
Cow position:
               
chr1:86073485-86073750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
92, 66
               

               
Conread position:
               
102-406
               

               
Cow position:
               
chr1:100324854-100324560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
88, 110
               

               
Conread position:
               
102-407
               

               
Cow position:
               
chr1:19145034-19144737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
23, 36
               

               
Conread position:
               
102-408
               

               
Cow position:
               
chr1:86113515-86113196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 116
               

               
Conread position:
               
102-410
               

               
Cow position:
               
chr1:99642476-99642169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 88
               

               
Conread position:
               
102-411
               

               
Cow position:
               
chr1:79640401-79640085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
83, 156
               

               
Conread position:
               
102-413
               

               
Cow position:
               
chr1:20000862-20000550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
21, 46
               

               
Conread position:
               
102-413
               

               
Cow position:
               
chr1:41181735-41182041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
177, 77
               

               
Conread position:
               
102-413
               

               
Cow position:
               
chr1:54258454-54258774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 46
               

               
Conread position:
               
102-414
               

               
Cow position:
               
chr1:635795-635478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
177, 93
               

               
Conread position:
               
102-414
               

               
Cow position:
               
chr1:4701782-4701465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
124, 93
               

               
Conread position:
               
102-414
               

               
Cow position:
               
chr1:42175613-42175935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
21, 76
               

               
Conread position:
               
102-414
               

               
Cow position:
               
chr1:57264107-57263786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
25, 180
               

               
Conread position:
               
102-415
               

               
Cow position:
               
chr1:54478213-54478524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
21, 159
               

               
Conread position:
               
102-415
               

               
Cow position:
               
chr1:68763793-68763476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
177, 64
               

               
Conread position:
               
102-416
               

               
Cow position:
               
chr1:26178922-26178600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
24, 36
               

               
Conread position:
               
102-417
               

               
Cow position:
               
chr1:96472334-96472625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
21, 81
               

               
Conread position:
               
102-419
               

               
Cow position:
               
chr1:19465945-19466248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
21, 85
               

               
Conread position:
               
102-419
               

               
Cow position:
               
chr1:71227976-71228306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
68, 164
               

               
Conread position:
               
102-419
               

               
Cow position:
               
chr1:96365555-96365860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
87, 35
               

               
Conread position:
               
102-420
               

               
Cow position:
               
chr1:7739844-7740155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
87, 52
               

               
Conread position:
               
102-420
               

               
Cow position:
               
chr1:60032708-60032402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
109, 84
               

               
Conread position:
               
102-421
               

               
Cow position:
               
chr1:72035035-72034715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 112
               

               
Conread position:
               
102-421
               

               
Cow position:
               
chr1:72105301-72105613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 132
               

               
Conread position:
               
102-421
               

               
Cow position:
               
chr1:91066264-91065943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 178
               

               
Conread position:
               
102-422
               

               
Cow position:
               
chr1:22525765-22526089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
21, 33
               

               
Conread position:
               
102-422
               

               
Cow position:
               
chr1:43311886-43311557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
83, 57
               

               
Conread position:
               
102-423
               

               
Cow position:
               
chr1:4243452-4243115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
79, 164
               

               
Conread position:
               
102-423
               

               
Cow position:
               
chr1:20667852-20667534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 82
               

               
Conread position:
               
102-423
               

               
Cow position:
               
chr1:21787219-21787540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 158
               

               
Conread position:
               
102-423
               

               
Cow position:
               
chr1:43855191-43855505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 106
               

               
Conread position:
               
103-252
               

               
Cow position:
               
chr1:22448696-22448542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
103-256
               

               
Cow position:
               
chr1:57635352-57635505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
103-301
               

               
Cow position:
               
chr1:85596832-85597027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
83, 132
               

               
Conread position:
               
103-312
               

               
Cow position:
               
chr1:26943199-26943408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
91, 31
               

               
Conread position:
               
103-317
               

               
Cow position:
               
chr1:45288981-45288766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
176, 153
               

               
Conread position:
               
103-331
               

               
Cow position:
               
chr1:30441847-30442075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
99, 52
               

               
Conread position:
               
103-335
               

               
Cow position:
               
chr1:52052831-52052594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
21, 88
               

               
Conread position:
               
103-344
               

               
Cow position:
               
chr1:27145759-27145523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
69, 88
               

               
Conread position:
               
103-345
               

               
Cow position:
               
chr1:36932047-36932288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
20, 88
               

               
Conread position:
               
103-378
               

               
Cow position:
               
chr1:635080-635364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
23, 74
               

               
Conread position:
               
103-404
               

               
Cow position:
               
chr1:75382884-75383159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
25, 64
               

               
Conread position:
               
103-410
               

               
Cow position:
               
chr1:100421723-100422023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
176, 78
               

               
Conread position:
               
103-414
               

               
Cow position:
               
chr1:47658238-47658554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
175, 63
               

               
Conread position:
               
103-417
               

               
Cow position:
               
chr1:34771614-34771289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 59
               

               
Conread position:
               
103-419
               

               
Cow position:
               
chr1:53369974-53370295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 34
               

               
Conread position:
               
103-421
               

               
Cow position:
               
chr1:13810541-13810864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
23, 77
               

               
Conread position:
               
103-421
               

               
Cow position:
               
chr1:84906179-84905847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
23, 159
               

               
Conread position:
               
103-421
               

               
Cow position:
               
chr1:100817446-100817755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
176, 84
               

               
Conread position:
               
103-423
               

               
Cow position:
               
chr1:16061126-16060793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 163
               

               
Conread position:
               
103-423
               

               
Cow position:
               
chr1:70416864-70416545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
180, 42
               

               
Conread position:
               
104-230
               

               
Cow position:
               
chr1:47883928-47883800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
40, 94
               

               
Conread position:
               
104-241
               

               
Cow position:
               
chr1:38544571-38544436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
104-308
               

               
Cow position:
               
chr1:26729614-26729810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
86, 29
               

               
Conread position:
               
104-330
               

               
Cow position:
               
chr1:31390703-31390470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
104-331
               

               
Cow position:
               
chr1:75347511-75347743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
19, 171
               

               
Conread position:
               
104-384
               

               
Cow position:
               
chr1:91816881-91816595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
22, 73
               

               
Conread position:
               
104-384
               

               
Cow position:
               
chr1:92963287-92963550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
85, 109
               

               
Conread position:
               
104-401
               

               
Cow position:
               
chr1:100741177-100741475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
19, 111
               

               
Conread position:
               
104-404
               

               
Cow position:
               
chr1:71045645-71045931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
19, 153
               

               
Conread position:
               
104-407
               

               
Cow position:
               
chr1:3962803-3962477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
129, 64
               

               
Conread position:
               
104-411
               

               
Cow position:
               
chr1:47886594-47886278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 157
               

               
Conread position:
               
104-420
               

               
Cow position:
               
chr1:627853-628180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 73
               

               
Conread position:
               
104-421
               

               
Cow position:
               
chr1:18936937-18936624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
85, 52
               

               
Conread position:
               
104-421
               

               
Cow position:
               
chr1:47790775-47790455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 156
               

               
Conread position:
               
104-421
               

               
Cow position:
               
chr1:96305089-96304761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
52, 166
               

               
Conread position:
               
105-331
               

               
Cow position:
               
chr1:31499516-31499744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
22, 33
               

               
Conread position:
               
105-343
               

               
Cow position:
               
chr1:80988237-80988477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
21, 158
               

               
Conread position:
               
105-347
               

               
Cow position:
               
chr1:69127275-69127031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
21, 88
               

               
Conread position:
               
105-348
               

               
Cow position:
               
chr1:26616182-26615939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
121, 72
               

               
Conread position:
               
105-399
               

               
Cow position:
               
chr1:98413663-98413967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
83, 38
               

               
Conread position:
               
105-413
               

               
Cow position:
               
chr1:95100851-95101157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
19, 46
               

               
Conread position:
               
105-414
               

               
Cow position:
               
chr1:56477479-56477792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 156
               

               
Conread position:
               
106-319
               

               
Cow position:
               
chr1:75141893-75142104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
20, 40
               

               
Conread position:
               
106-331
               

               
Cow position:
               
chr1:73196342-73196110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
17, 169
               

               
Conread position:
               
106-331
               

               
Cow position:
               
chr1:74947234-74947000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
21, 160
               

               
Conread position:
               
106-344
               

               
Cow position:
               
chr1:33997024-33996792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
173, 65
               

               
Conread position:
               
106-344
               

               
Cow position:
               
chr1:83747835-83748075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
88, 32
               

               
Conread position:
               
106-345
               

               
Cow position:
               
chr1:81913259-81913022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
83, 27
               

               
Conread position:
               
106-404
               

               
Cow position:
               
chr1:39225034-39224743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
17, 86
               

               
Conread position:
               
106-414
               

               
Cow position:
               
chr1:7971310-7971610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
126, 28
               

               
Conread position:
               
106-417
               

               
Cow position:
               
chr1:8129078-8128770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
20, 99
               

               
Conread position:
               
106-420
               

               
Cow position:
               
chr1:42869045-42868738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 145
               

               
Conread position:
               
106-421
               

               
Cow position:
               
chr1:38418926-38419240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 27
               

               
Conread position:
               
107-316
               

               
Cow position:
               
chr1:56634989-56635202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
16, 106
               

               
Conread position:
               
107-343
               

               
Cow position:
               
chr1:19885277-19885512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
19, 31
               

               
Conread position:
               
107-421
               

               
Cow position:
               
chr1:26895932-26895599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
82, 167
               

               
Conread position:
               
107-422
               

               
Cow position:
               
chr1:60856211-60856535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
81, 69
               

               
Conread position:
               
107-422
               

               
Cow position:
               
chr1:70389324-70389644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
87, 25
               

               
Conread position:
               
107-422
               

               
Cow position:
               
chr1:101714010-101714330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
66, 22
               

               
Conread position:
               
108-336
               

               
Cow position:
               
chr1:24406999-24406773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
15, 73
               

               
Conread position:
               
108-413
               

               
Cow position:
               
chr1:75250007-75250317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
15, 27
               

               
Conread position:
               
108-421
               

               
Cow position:
               
chr1:8374561-8374240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
18, 72
               

               
Conread position:
               
108-421
               

               
Cow position:
               
chr1:77620440-77620762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
83, 187
               

               
Conread position:
               
109-231
               

               
Cow position:
               
chr1:32788286-32788165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
84, 36
               

               
Conread position:
               
109-347
               

               
Cow position:
               
chr1:67305349-67305108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
17, 132
               

               
Conread position:
               
109-418
               

               
Cow position:
               
chr1:78079617-78079934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 74
               

               
Conread position:
               
109-421
               

               
Cow position:
               
chr1:87072594-87072907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 42
               

               
Conread position:
               
110-421
               

               
Cow position:
               
chr1:22823803-22824122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 27
               

               
Conread position:
               
110-421
               

               
Cow position:
               
chr1:73584514-73584192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
15, 68
               

               
Conread position:
               
111-344
               

               
Cow position:
               
chr1:58186644-58186884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
98, 69
               

               
Conread position:
               
112-351
               

               
Cow position:
               
chr1:68676261-68676501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
167, 78
               

               
Conread position:
               
112-416
               

               
Cow position:
               
chr1:49825170-49824856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
77, 152
               

               
Conread position:
               
112-421
               

               
Cow position:
               
chr1:65028430-65028733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
11, 147
               

               
Conread position:
               
113-228
               

               
Cow position:
               
chr1:71818557-71818446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
113-246
               

               
Cow position:
               
chr1:81471033-81471166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
75, 101
               

               
Conread position:
               
113-276
               

               
Cow position:
               
chr1:24235616-24235457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
113-281
               

               
Cow position:
               
chr1:1991520-1991350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
77, 21
               

               
Conread position:
               
113-328
               

               
Cow position:
               
chr1:72286156-72285952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
166, 52
               

               
Conread position:
               
113-336
               

               
Cow position:
               
chr1:41252500-41252286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
122, 32
               

               
Conread position:
               
113-340
               

               
Cow position:
               
chr1:39418220-39417987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
72, 152
               

               
Conread position:
               
113-342
               

               
Cow position:
               
chr1:5579955-5580185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
55, 142
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr1:89785812-89786040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
166, 67
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr1:97778891-97779122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
22, 33
               

               
Conread position:
               
113-351
               

               
Cow position:
               
chr1:58036920-58037156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
153, 29
               

               
Conread position:
               
113-358
               

               
Cow position:
               
chr1:89342094-89341834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
73, 123
               

               
Conread position:
               
113-374
               

               
Cow position:
               
chr1:40531212-40530938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
74, 131
               

               
Conread position:
               
113-384
               

               
Cow position:
               
chr1:11729082-11729344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 72
               

               
Conread position:
               
113-384
               

               
Cow position:
               
chr1:43389149-43388881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
79, 31
               

               
Conread position:
               
113-384
               

               
Cow position:
               
chr1:95499592-95499323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
98, 21
               

               
Conread position:
               
113-386
               

               
Cow position:
               
chr1:53458597-53458873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
78, 140
               

               
Conread position:
               
113-393
               

               
Cow position:
               
chr1:1053490-1053764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
21, 60
               

               
Conread position:
               
113-398
               

               
Cow position:
               
chr1:55818962-55819224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
113-401
               

               
Cow position:
               
chr1:6941364-6941659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 75
               

               
Conread position:
               
113-401
               

               
Cow position:
               
chr1:6958777-6959072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
128, 75
               

               
Conread position:
               
113-401
               

               
Cow position:
               
chr1:77720334-77720067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
166, 72
               

               
Conread position:
               
113-412
               

               
Cow position:
               
chr1:56225367-56225671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
73, 147
               

               
Conread position:
               
113-414
               

               
Cow position:
               
chr1:25383563-25383876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
23, 122
               

               
Conread position:
               
113-414
               

               
Cow position:
               
chr1:55705349-55705041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
73, 123
               

               
Conread position:
               
113-415
               

               
Cow position:
               
chr1:74956120-74955824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
74, 145
               

               
Conread position:
               
113-417
               

               
Cow position:
               
chr1:86062085-86061768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
48, 76
               

               
Conread position:
               
113-418
               

               
Cow position:
               
chr1:3923894-3923593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 56
               

               
Conread position:
               
113-419
               

               
Cow position:
               
chr1:4391382-4391056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
113-419
               

               
Cow position:
               
chr1:22730645-22730945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
11, 42
               

               
Conread position:
               
113-421
               

               
Cow position:
               
chr1:10616781-10617104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
82, 158
               

               
Conread position:
               
113-421
               

               
Cow position:
               
chr1:63596153-63595838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
72, 38
               

               
Conread position:
               
113-421
               

               
Cow position:
               
chr1:101834725-101835030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 21
               

               
Conread position:
               
113-422
               

               
Cow position:
               
chr1:43352758-43352439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 127
               

               
Conread position:
               
113-423
               

               
Cow position:
               
chr1:21954329-21954012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
76, 13
               

               
Conread position:
               
113-423
               

               
Cow position:
               
chr1:78857420-78857110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
166, 21
               

               
Conread position:
               
114-320
               

               
Cow position:
               
chr1:81355807-81355595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
73, 147
               

               
Conread position:
               
114-334
               

               
Cow position:
               
chr1:59147437-59147223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
80, 19
               

               
Conread position:
               
114-343
               

               
Cow position:
               
chr1:92989490-92989721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
10, 141
               

               
Conread position:
               
114-384
               

               
Cow position:
               
chr1:101792212-101791944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
97, 13
               

               
Conread position:
               
114-422
               

               
Cow position:
               
chr1:95056956-95057250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
10, 53
               

               
Conread position:
               
117-357
               

               
Cow position:
               
chr1:71796409-71796170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
72, 37
               

               
Conread position:
               
117-422
               

               
Cow position:
               
chr1:102306239-102305932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
24, 119
               

               
Conread position:
               
118-272
               

               
Cow position:
               
chr1:7597156-7597313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
73, 140
               

               
Conread position:
               
118-286
               

               
Cow position:
               
chr1:101946804-101946641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
161, 68
               

               
Conread position:
               
118-340
               

               
Cow position:
               
chr1:6972435-6972654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
161, 77
               

               
Conread position:
               
118-344
               

               
Cow position:
               
chr1:45670544-45670764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
161, 30
               

               
Conread position:
               
118-348
               

               
Cow position:
               
chr1:71643753-71643526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
93, 49
               

               
Conread position:
               
118-409
               

               
Cow position:
               
chr1:77425706-77425410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
161, 71
               

               
Conread position:
               
118-412
               

               
Cow position:
               
chr1:82513450-82513147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
75, 143
               

               
Conread position:
               
118-413
               

               
Cow position:
               
chr1:6103006-6102695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
63, 151
               

               
Conread position:
               
118-413
               

               
Cow position:
               
chr1:84282980-84283276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
161, 72
               

               
Conread position:
               
118-414
               

               
Cow position:
               
chr1:101916078-101916376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
161, 70
               

               
Conread position:
               
118-417
               

               
Cow position:
               
chr1:62519264-62519575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
65, 113
               

               
Conread position:
               
118-422
               

               
Cow position:
               
chr1:6228678-6228368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
161, 72
               

               
Conread position:
               
118-422
               

               
Cow position:
               
chr1:19970694-19970379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
63, 50
               

               
Conread position:
               
118-422
               

               
Cow position:
               
chr1:70422211-70422516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
61, 73
               

               
Conread position:
               
118-423
               

               
Cow position:
               
chr1:55229891-55230189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
161, 24
               

               
Conread position:
               
121-293
               

               
Cow position:
               
chr1:72684605-72684773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
168, 134
               

               
Conread position:
               
121-295
               

               
Cow position:
               
chr1:55089144-55088972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
68, 100
               

               
Conread position:
               
121-319
               

               
Cow position:
               
chr1:92433909-92434106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
68, 56
               

               
Conread position:
               
121-418
               

               
Cow position:
               
chr1:3605969-3605679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
14, 47
               

               
Conread position:
               
121-418
               

               
Cow position:
               
chr1:64302339-64302039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 147
               

               
Conread position:
               
121-421
               

               
Cow position:
               
chr1:82880553-82880845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
66, 76
               

               
Conread position:
               
121-421
               

               
Cow position:
               
chr1:90904845-90904543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
158, 58
               

               
Conread position:
               
121-423
               

               
Cow position:
               
chr1:4691504-4691803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
61, 77
               

               
Conread position:
               
121-423
               

               
Cow position:
               
chr1:12222695-12222389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
158, 67
               

               
Conread position:
               
121-423
               

               
Cow position:
               
chr1:74319872-74319568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
113, 58
               

               
Conread position:
               
122-303
               

               
Cow position:
               
chr1:70026434-70026254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
121, 58
               

               
Conread position:
               
122-348
               

               
Cow position:
               
chr1:50991844-50992070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
157, 44
               

               
Conread position:
               
122-399
               

               
Cow position:
               
chr1:17196720-17196434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
70, 55
               

               
Conread position:
               
122-413
               

               
Cow position:
               
chr1:58347514-58347215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
34, 84
               

               
Conread position:
               
122-414
               

               
Cow position:
               
chr1:77425012-77425318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
65, 43
               

               
Conread position:
               
122-417
               

               
Cow position:
               
chr1:95557947-95558248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
89, 11
               

               
Conread position:
               
122-421
               

               
Cow position:
               
chr1:72068929-72068621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 137
               

               
Conread position:
               
122-422
               

               
Cow position:
               
chr1:11172285-11172583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
157, 68
               

               
Conread position:
               
124-414
               

               
Cow position:
               
chr1:102266355-102266064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 10
               

               
Conread position:
               
124-418
               

               
Cow position:
               
chr1:100474143-100474449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 134
               

               
Conread position:
               
125-420
               

               
Cow position:
               
chr1:65103532-65103842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
65, 40
               

               
Conread position:
               
126-336
               

               
Cow position:
               
chr1:48769717-48769927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
153, 61
               

               
Conread position:
               
126-398
               

               
Cow position:
               
chr1:98030828-98031105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
55, 138
               

               
Conread position:
               
127-333
               

               
Cow position:
               
chr1:56832859-56832658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
152, 41
               

               
Conread position:
               
127-419
               

               
Cow position:
               
chr1:40192777-40192491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
152, 41
               

               
Conread position:
               
127-422
               

               
Cow position:
               
chr1:86340559-86340245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
54, 131
               

               
Conread position:
               
128-332
               

               
Cow position:
               
chr1:15028665-15028872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
65, 129
               

               
Conread position:
               
128-344
               

               
Cow position:
               
chr1:8347039-8347255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
151, 63
               

               
Conread position:
               
128-382
               

               
Cow position:
               
chr1:33913736-33914002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
61, 133
               

               
Conread position:
               
129-418
               

               
Cow position:
               
chr1:75744778-75745071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
65, 5
               

               
Conread position:
               
129-421
               

               
Cow position:
               
chr1:92197369-92197667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
66, 103
               

               
Conread position:
               
130-416
               

               
Cow position:
               
chr1:1981197-1980901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
55, 127
               

               
Conread position:
               
132-358
               

               
Cow position:
               
chr1:27881532-27881750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
147, 54
               

               
Conread position:
               
132-414
               

               
Cow position:
               
chr1:97794629-97794343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
55, 112
               

               
Conread position:
               
137-422
               

               
Cow position:
               
chr1:197083-196791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
49, 124
               

               
Conread position:
               
138-301
               

               
Cow position:
               
chr1:21934250-21934087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
60, 120
               

               
Conread position:
               
138-339
               

               
Cow position:
               
chr1:52994946-52995153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
53, 121
               

               
Conread position:
               
138-342
               

               
Cow position:
               
chr1:74822375-74822581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
141, 41
               

               
Conread position:
               
138-343
               

               
Cow position:
               
chr1:80336319-80336117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
50, 30
               

               
Conread position:
               
138-344
               

               
Cow position:
               
chr1:40207195-40206977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
133, 54
               

               
Conread position:
               
138-344
               

               
Cow position:
               
chr1:98461213-98461416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
141, 30
               

               
Conread position:
               
138-344
               

               
Cow position:
               
chr1:98551642-98551851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
50, 117
               

               
Conread position:
               
138-344
               

               
Cow position:
               
chr1:98575971-98576179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 67
               
UCSC Genome Browser

               
Conread position:
               
138-382
               

               
Cow position:
               
chr1:61005630-61005389 (view  custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
145, 34
               
UCSC Genome Browser

               
               
               
Conread position:
138-384

               
               
               
Cow position:
chr1:13637739-13637492 (view  custom track)

               
               
               
Alignm length:
251

               
               
               
Alignm identity:
173

               
               
               
Alignm E-value:
3e-29

               
               
               
Alignm gaps (pig, cow):
67, 45
UCSC Genome Browser

               
               
               
Conread position:
138-386

               
               
               
Cow position:
chr1:91811707-91811957 (view  custom track)

               
               
               
Alignm length:
257

               
               
               
Alignm identity:
200

               
               
               
Alignm E-value:
0

               
               
               
Alignm gaps (pig, cow):
141, 98

               
               
               Conread position:138-404
               
               
               Cow position:chr1:52467227-52467481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):60, 122

               
               
               Conread position:138-411
               
               
               Cow position:chr1:24597583-24597855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):149, 49

               
               
               Conread position:138-412
               
               
               Cow position:chr1:89388263-89388548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:138-415
               
               
               Cow position:chr1:37707048-37706762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):51, 113

               
               
               Conread position:138-415
               
               
               Cow position:chr1:83072363-83072648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):49, 124

               
               
               Conread position:138-417
               
               
               Cow position:chr1:3815771-3815471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):18, 132

               
               
               Conread position:138-417
               
               
               Cow position:chr1:86057141-86056869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):152, 36

               
               
               Conread position:138-419
               
               
               Cow position:chr1:29474422-29474141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):62, 40

               
               
               Conread position:138-419
               
               
               Cow position:chr1:98467733-98468014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):141, 27

               
               
               Conread position:138-421
               
               
               Cow position:chr1:56225713-56225996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 51

               
               
               Conread position:138-421
               
               
               Cow position:chr1:70434923-70435199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):53, 98

               
               
               Conread position:138-422
               
               
               Cow position:chr1:1956408-1956123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 118

               
               
               Conread position:138-422
               
               
               Cow position:chr1:25281735-25281463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):49, 121

               
               
               Conread position:138-423
               
               
               Cow position:chr1:8542-8834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:216
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):141, 51

               
               
               Conread position:138-423
               
               
               Cow position:chr1:22728977-22729269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):48, 122

               
               
               Conread position:138-423
               
               
               Cow position:chr1:53402707-53402999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):80, 39

               
               
               Conread position:139-416
               
               
               Cow position:chr1:102753779-102754059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:214
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):90, 123

               
               
               Conread position:139-417
               
               
               Cow position:chr1:61884840-61885121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):57, 17

               
               
               Conread position:139-423
               
               
               Cow position:chr1:96277127-96276841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):51, 108

               
               
               Conread position:140-344
               
               
               Cow position:chr1:68672672-68672470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:170
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 99

               
               
               Conread position:140-384
               
               
               Cow position:chr1:89158202-89157957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):45, 120

               
               
               Conread position:140-412
               
               
               Cow position:chr1:98583685-98583953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):139, 55

               
               
               Conread position:140-421
               
               
               Cow position:chr1:42541525-42541805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 53

               
               
               Conread position:140-422
               
               
               Cow position:chr1:46693728-46693437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):46, 120

               
               
               Conread position:140-423
               
               
               Cow position:chr1:6394486-6394772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 50

               
               
               Conread position:141-342
               
               
               Cow position:chr1:11226316-11226118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):138, 37

               
               
               Conread position:141-422
               
               
               Cow position:chr1:186348-186066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:212
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):43, 117

               
               
               Conread position:141-422
               
               
               Cow position:chr1:92684763-92684466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):85, 47

               
               
               Conread position:142-344
               
               
               Cow position:chr1:6240349-6240151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):135, 45

               
               
               Conread position:142-384
               
               
               Cow position:chr1:2971840-2972093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):40, 122

               
               
               Conread position:142-420
               
               
               Cow position:chr1:5776070-5776359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):55, 34

               
               
               Conread position:143-341
               
               
               Cow position:chr1:73936221-73936015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):45, 119

               
               
               Conread position:143-401
               
               
               Cow position:chr1:45223510-45223769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 112

               
               
               Conread position:143-412
               
               
               Cow position:chr1:74832357-74832633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):136, 22

               
               
               Conread position:144-341
               
               
               Cow position:chr1:78068133-78067941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):135, 44

               
               
               Conread position:144-415
               
               
               Cow position:chr1:19515683-19515409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):135, 35

               
               
               Conread position:145-420
               
               
               Cow position:chr1:96019166-96019441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):134, 41

               
               
               Conread position:146-304
               
               
               Cow position:chr1:5023830-5023670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):40, 111

               
               
               Conread position:146-413
               
               
               Cow position:chr1:41289844-41289573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):43, 30

               
               
               Conread position:146-416
               
               
               Cow position:chr1:16855763-16855493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):133, 44

               
               
               Conread position:146-421
               
               
               Cow position:chr1:85688120-85688398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):133, 22

               
               
               Conread position:146-423
               
               
               Cow position:chr1:6589974-6590252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):133, 33

               
               
               Conread position:147-344
               
               
               Cow position:chr1:43312094-43311899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):46, 20

               
               
               Conread position:147-347
               
               
               Cow position:chr1:95072264-95072467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):47, 111

               
               
               Conread position:148-410
               
               
               Cow position:chr1:60986921-60987194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):40, 114

               
               
               Conread position:148-413
               
               
               Cow position:chr1:3965775-3966035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):131, 31

               
               
               Conread position:148-421
               
               
               Cow position:chr1:28059033-28058752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):38, 109

               
               
               Conread position:148-421
               
               
               Cow position:chr1:51609309-51609591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):41, 110

               
               
               Conread position:148-423
               
               
               Cow position:chr1:97611725-97611457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):131, 116

               
               
               Conread position:149-335
               
               
               Cow position:chr1:71253616-71253433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):130, 30

               
               
               Conread position:149-343
               
               
               Cow position:chr1:8624513-8624319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:156
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):130, 107

               
               
               Conread position:149-417
               
               
               Cow position:chr1:78066602-78066333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):42, 59

               
               
               Conread position:150-404
               
               
               Cow position:chr1:48206598-48206344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):66, 40

               
               
               Conread position:150-423
               
               
               Cow position:chr1:61742032-61741748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):38, 122

               
               
               Conread position:151-348
               
               
               Cow position:chr1:82942225-82942416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):128, 39

               
               
               Conread position:151-348
               
               
               Cow position:chr1:82944333-82944142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):128, 39

               
               
               Conread position:151-413
               
               
               Cow position:chr1:88359819-88360091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:205
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):128, 34

               
               
               Conread position:151-420
               
               
               Cow position:chr1:6287086-6287363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):43, 26

               
               
               Conread position:151-421
               
               
               Cow position:chr1:83659342-83659062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):37, 107

               
               
               Conread position:152-331
               
               
               Cow position:chr1:46764813-46764994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):43, 104

               
               
               Conread position:152-413
               
               
               Cow position:chr1:79718740-79719013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):35, 58

               
               
               Conread position:152-423
               
               
               Cow position:chr1:21560955-21561235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):127, 27

               
               
               Conread position:154-309
               
               
               Cow position:chr1:96583659-96583496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:154-328
               
               
               Cow position:chr1:30504443-30504617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):125, 37

               
               
               Conread position:154-341
               
               
               Cow position:chr1:99221413-99221227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):34, 98

               
               
               Conread position:154-412
               
               
               Cow position:chr1:50765556-50765818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:185
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):125, 32

               
               
               Conread position:154-413
               
               
               Cow position:chr1:31819049-31819309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):11, 101

               
               
               Conread position:154-421
               
               
               Cow position:chr1:30862470-30862200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):35, 107

               
               
               Conread position:154-421
               
               
               Cow position:chr1:62235506-62235242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):39, 99

               
               
               Conread position:154-423
               
               
               Cow position:chr1:6760086-6759829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):125, 24

               
               
               Conread position:154-423
               
               
               Cow position:chr1:77739657-77739939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 108

               
               
               Conread position:155-408
               
               
               Cow position:chr1:22035551-22035808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 54

               
               
               Conread position:156-333
               
               
               Cow position:chr1:42138800-42138979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):31, 99

               
               
               Conread position:156-350
               
               
               Cow position:chr1:95974338-95974537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):31, 105

               
               
               Conread position:156-419
               
               
               Cow position:chr1:30035156-30035435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):33, 118

               
               
               Conread position:156-419
               
               
               Cow position:chr1:31357568-31357303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):33, 102

               
               
               Conread position:157-369
               
               
               Cow position:chr1:54624873-54625092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):22, 10

               
               
               Conread position:157-422
               
               
               Cow position:chr1:81481440-81481170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:200
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):24, 104

               
               
               Conread position:158-361
               
               
               Cow position:chr1:84768934-84768730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):121, 98

               
               
               Conread position:158-417
               
               
               Cow position:chr1:81390862-81391131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):30, 101

               
               
               Conread position:158-421
               
               
               Cow position:chr1:94687827-94687555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):38, 99

               
               
               Conread position:159-277
               
               
               Cow position:chr1:99311483-99311365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:159-344
               
               
               Cow position:chr1:69482005-69481818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):31, 100

               
               
               Conread position:159-421
               
               
               Cow position:chr1:97717630-97717363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):30, 104

               
               
               Conread position:159-423
               
               
               Cow position:chr1:95829172-95828920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):36, 19

               
               
               Conread position:161-413
               
               
               Cow position:chr1:76613188-76612927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:197
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):27, 96

               
               
               Conread position:161-415
               
               
               Cow position:chr1:57089735-57089472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):26, 97

               
               
               Conread position:161-423
               
               
               Cow position:chr1:500121-500392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):34, 100

               
               
               Conread position:162-384
               
               
               Cow position:chr1:70025420-70025193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):29, 21

               
               
               Conread position:162-414
               
               
               Cow position:chr1:99322620-99322364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):30, 103

               
               
               Conread position:163-414
               
               
               Cow position:chr1:52912948-52912686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):25, 45

               
               
               Conread position:165-344
               
               
               Cow position:chr1:84203465-84203643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:168-411
               
               
               Cow position:chr1:60044941-60045191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):21, 92

               
               
               Conread position:168-415
               
               
               Cow position:chr1:60490458-60490714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):21, 89

               
               
               Conread position:168-422
               
               
               Cow position:chr1:74751680-74751414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):63, 90

               
               
               Conread position:169-421
               
               
               Cow position:chr1:54628901-54628642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):22, 90

               
               
               Conread position:169-422
               
               
               Cow position:chr1:102468659-102468408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):110, 22

               
               
               Conread position:171-419
               
               
               Cow position:chr1:21093072-21093329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):7, 86

               
               
               Conread position:172-420
               
               
               Cow position:chr1:63530519-63530771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):107, 18

               
               
               Conread position:173-348
               
               
               Cow position:chr1:8670732-8670910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):20, 84

               
               
               Conread position:173-348
               
               
               Cow position:chr1:71916160-71915984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):22, 67

               
               
               Conread position:173-414
               
               
               Cow position:chr1:7907996-7908232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):18, 87

               
               
               Conread position:173-414
               
               
               Cow position:chr1:102768143-102768382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:189
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):37, 16

               
               
               Conread position:173-417
               
               
               Cow position:chr1:82537895-82538137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):24, 48

               
               
               Conread position:173-419
               
               
               Cow position:chr1:89871928-89872179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):106, 17

               
               
               Conread position:174-421
               
               
               Cow position:chr1:95835836-95835582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 15

               
               
               Conread position:175-417
               
               
               Cow position:chr1:75189748-75189997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):104, 11

               
               
               Conread position:175-422
               
               
               Cow position:chr1:76037553-76037298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):6, 16

               
               
               Conread position:175-423
               
               
               Cow position:chr1:17055957-17056205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):104, 16

               
               
               Conread position:176-421
               
               
               Cow position:chr1:72422446-72422193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:190
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):19, 81

               
               
               Conread position:177-421
               
               
               Cow position:chr1:73020700-73020449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:189
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):12, 89

               
               
               Conread position:178-412
               
               
               Cow position:chr1:4055417-4055649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):101, 71

               
               
               Conread position:178-417
               
               
               Cow position:chr1:71770343-71770097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):101, 16

               
               
               Conread position:179-413
               
               
               Cow position:chr1:81515200-81515444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):100, 15

               
               
               Conread position:179-420
               
               
               Cow position:chr1:15206905-15206669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):110, 10

               
               
               Conread position:179-421
               
               
               Cow position:chr1:4539459-4539206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):18, 80

               
               
               Conread position:179-421
               
               
               Cow position:chr1:36920986-36921234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):30, 9

               
               
               Conread position:181-414
               
               
               Cow position:chr1:92523979-92524223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):17, 78

               
               
               Conread position:181-416
               
               
               Cow position:chr1:67654353-67654116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):12, 79

               
               
               Conread position:181-417
               
               
               Cow position:chr1:97144495-97144261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):89, 18

               
               
               Conread position:181-423
               
               
               Cow position:chr1:101177484-101177739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):93, 14

               
               
               Conread position:182-343
               
               
               Cow position:chr1:81809169-81809008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):97, 55

               
               
               Conread position:182-344
               
               
               Cow position:chr1:80757122-80756963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):97, 35

               
               
               Conread position:183-329
               
               
               Cow position:chr1:74082010-74081864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):96, 12

               
               
               Conread position:183-341
               
               
               Cow position:chr1:45478887-45478734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):96, 12

               
               
               Conread position:183-423
               
               
               Cow position:chr1:76735507-76735263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):96, 15

               
               
               Conread position:185-344
               
               
               Cow position:chr1:54157266-54157428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):48, 81

               
               
               Conread position:186-343
               
               
               Cow position:chr1:79087888-79087728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):92, 66

               
               
               Conread position:186-384
               
               
               Cow position:chr1:99629150-99629335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):148, 65

               
               
               Conread position:186-420
               
               
               Cow position:chr1:98046029-98046263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):93, 18

               
               
               Conread position:187-412
               
               
               Cow position:chr1:81858928-81858697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:176
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):32, 161

               
               
               Conread position:187-421
               
               
               Cow position:chr1:49334418-49334179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:180
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):92, 54

               
               
               Conread position:188-340
               
               
               Cow position:chr1:42178715-42178873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):28, 76

               
               
               Conread position:189-414
               
               
               Cow position:chr1:242535-242759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):90, 8

               
               
               Conread position:189-420
               
               
               Cow position:chr1:46245773-46245524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:190-318
               
               
               Cow position:chr1:102346059-102345929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):89, 69

               
               
               Conread position:190-348
               
               
               Cow position:chr1:28470803-28470966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):83, 66

               
               
               Conread position:190-369
               
               
               Cow position:chr1:19962029-19962207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):9, 65

               
               
               Conread position:190-401
               
               
               Cow position:chr1:62034851-62034642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):102, 69

               
               
               Conread position:190-402
               
               
               Cow position:chr1:63078987-63079195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):193, 69

               
               
               Conread position:190-402
               
               
               Cow position:chr1:95618619-95618835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):89, 69

               
               
               Conread position:190-416
               
               
               Cow position:chr1:49980687-49980917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):89, 66

               
               
               Conread position:190-423
               
               
               Cow position:chr1:42152508-42152273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):46, 71

               
               
               Conread position:190-423
               
               
               Cow position:chr1:98897717-98897474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):89, 69

               
               
               Conread position:191-344
               
               
               Cow position:chr1:84010750-84010899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):88, 63

               
               
               Conread position:191-376
               
               
               Cow position:chr1:52488002-52487813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):88, 65

               
               
               Conread position:191-402
               
               
               Cow position:chr1:73721338-73721558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):88, 65

               
               
               Conread position:191-404
               
               
               Cow position:chr1:20125776-20125991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):100, 8

               
               
               Conread position:191-414
               
               
               Cow position:chr1:63992358-63992128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):56, 68

               
               
               Conread position:191-419
               
               
               Cow position:chr1:66752651-66752421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):88, 65

               
               
               Conread position:191-419
               
               
               Cow position:chr1:100823015-100823251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:181
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):15, 44

               
               
               Conread position:191-421
               
               
               Cow position:chr1:52496750-52496981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):88, 30

               
               
               Conread position:191-421
               
               
               Cow position:chr1:91755258-91755496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):88, 65

               
               
               Conread position:191-422
               
               
               Cow position:chr1:5006140-5006359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):88, 65

               
               
               Conread position:191-423
               
               
               Cow position:chr1:528093-527868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):92, 32

               
               
               Conread position:191-423
               
               
               Cow position:chr1:14106640-14106392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:191-423
               
               
               Cow position:chr1:38706876-38706638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:182
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):88, 65

               
               
               Conread position:191-423
               
               
               Cow position:chr1:67529033-67529272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:184
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):88, 68

               
               
               Conread position:192-343
               
               
               Cow position:chr1:24791967-24791815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):83, 62

               
               
               Conread position:192-348
               
               
               Cow position:chr1:20864036-20864189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):87, 60

               
               
               Conread position:192-358
               
               
               Cow position:chr1:3914939-3914772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):87, 57

               
               
               Conread position:192-413
               
               
               Cow position:chr1:68127211-68126984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):87, 72

               
               
               Conread position:192-413
               
               
               Cow position:chr1:93590607-93590384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):87, 67

               
               
               Conread position:192-416
               
               
               Cow position:chr1:55753236-55753011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):88, 38

               
               
               Conread position:192-423
               
               
               Cow position:chr1:8287651-8287414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:187
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):87, 66

               
               
               Conread position:192-423
               
               
               Cow position:chr1:83972743-83972979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):87, 48

               
               
               Conread position:193-412
               
               
               Cow position:chr1:43148568-43148333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):28, 69

               
               
               Conread position:193-413
               
               
               Cow position:chr1:99570507-99570292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):51, 44

               
               
               Conread position:193-423
               
               
               Cow position:chr1:6731161-6731394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:180
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):86, 23

               
               
               Conread position:193-423
               
               
               Cow position:chr1:20871579-20871341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):86, 61

               
               
               Conread position:194-341
               
               
               Cow position:chr1:67918738-67918886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):85, 65

               
               
               Conread position:194-416
               
               
               Cow position:chr1:52370182-52369977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):85, 25

               
               
               Conread position:194-419
               
               
               Cow position:chr1:76739928-76739703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):85, 22

               
               
               Conread position:194-421
               
               
               Cow position:chr1:9637010-9637243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):20, 9

               
               
               Conread position:195-412
               
               
               Cow position:chr1:51860579-51860360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:171
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):84, 60

               
               
               Conread position:195-415
               
               
               Cow position:chr1:37918207-37917971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):84, 63

               
               
               Conread position:195-419
               
               
               Cow position:chr1:72092641-72092411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):84, 59

               
               
               Conread position:195-421
               
               
               Cow position:chr1:852152-852386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):88, 64

               
               
               Conread position:196-344
               
               
               Cow position:chr1:65881790-65881937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):95, 63

               
               
               Conread position:196-384
               
               
               Cow position:chr1:69940840-69940651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):83, 68

               
               
               Conread position:196-418
               
               
               Cow position:chr1:102648261-102648490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):83, 67

               
               
               Conread position:196-421
               
               
               Cow position:chr1:73719444-73719685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):83, 63

               
               
               Conread position:197-344
               
               
               Cow position:chr1:56711615-56711469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):82, 52

               
               
               Conread position:197-404
               
               
               Cow position:chr1:2462367-2462567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):80, 51

               
               
               Conread position:197-408
               
               
               Cow position:chr1:6381756-6381976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):82, 57

               
               
               Conread position:197-414
               
               
               Cow position:chr1:90267705-90267930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):82, 31

               
               
               Conread position:197-416
               
               
               Cow position:chr1:45315652-45315423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):82, 67

               
               
               Conread position:198-327
               
               
               Cow position:chr1:24561524-24561394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):81, 58

               
               
               Conread position:198-327
               
               
               Cow position:chr1:24570962-24570832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):81, 58

               
               
               Conread position:198-342
               
               
               Cow position:chr1:45874093-45873940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:198-344
               
               
               Cow position:chr1:19304556-19304702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):5, 62

               
               
               Conread position:198-410
               
               
               Cow position:chr1:61011166-61011377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):81, 61

               
               
               Conread position:198-417
               
               
               Cow position:chr1:23969067-23968855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):81, 18

               
               
               Conread position:198-423
               
               
               Cow position:chr1:92075474-92075696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):81, 58

               
               
               Conread position:199-331
               
               
               Cow position:chr1:85712426-85712558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):80, 57

               
               
               Conread position:199-384
               
               
               Cow position:chr1:6031610-6031800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):80, 60

               
               
               Conread position:200-404
               
               
               Cow position:chr1:83606463-83606260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):79, 59

               
               
               Conread position:200-413
               
               
               Cow position:chr1:10674138-10674353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):79, 113

               
               
               Conread position:200-422
               
               
               Cow position:chr1:6790762-6790988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):89, 26

               
               
               Conread position:200-422
               
               
               Cow position:chr1:96184002-96183774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):42, 63

               
               
               Conread position:201-421
               
               
               Cow position:chr1:4582538-4582763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):8, 59

               
               
               Conread position:202-348
               
               
               Cow position:chr1:64019532-64019385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):77, 57

               
               
               Conread position:202-423
               
               
               Cow position:chr1:6440560-6440331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):71, 52

               
               
               Conread position:203-420
               
               
               Cow position:chr1:95152861-95153086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):76, 56

               
               
               Conread position:203-421
               
               
               Cow position:chr1:4444852-4444626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):74, 51

               
               
               Conread position:203-423
               
               
               Cow position:chr1:22461248-22461028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:169
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):76, 56

               
               
               Conread position:205-408
               
               
               Cow position:chr1:97540627-97540839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):78, 53

               
               
               Conread position:206-348
               
               
               Cow position:chr1:92603011-92603155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):9, 54

               
               
               Conread position:206-420
               
               
               Cow position:chr1:87083622-87083841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):73, 52

               
               
               Conread position:206-421
               
               
               Cow position:chr1:150932-150711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):73, 53

               
               
               Conread position:206-421
               
               
               Cow position:chr1:51435772-51435992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):73, 53

               
               
               Conread position:207-384
               
               
               Cow position:chr1:101525931-101525747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):72, 52

               
               
               Conread position:207-407
               
               
               Cow position:chr1:11489167-11488959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):57, 28

               
               
               Conread position:207-423
               
               
               Cow position:chr1:95156969-95156749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):72, 12

               
               
               Conread position:208-415
               
               
               Cow position:chr1:73551515-73551294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):71, 51

               
               
               Conread position:209-414
               
               
               Cow position:chr1:100852705-100852909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):70, 50

               
               
               Conread position:211-420
               
               
               Cow position:chr1:4294342-4294557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):68, 51

               
               
               Conread position:211-423
               
               
               Cow position:chr1:56913531-56913317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):7, 12

               
               
               Conread position:213-402
               
               
               Cow position:chr1:23633932-23633733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):31, 48

               
               
               Conread position:213-414
               
               
               Cow position:chr1:92792052-92792258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):66, 21

               
               
               Conread position:213-419
               
               
               Cow position:chr1:87220460-87220654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):76, 45

               
               
               Conread position:214-417
               
               
               Cow position:chr1:32014199-32014401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):65, 20

               
               
               Conread position:216-412
               
               
               Cow position:chr1:30948995-30949187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):75, 52

               
               
               Conread position:216-419
               
               
               Cow position:chr1:84594891-84595102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):63, 43

               
               
               Conread position:217-413
               
               
               Cow position:chr1:63994551-63994350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):62, 41

               
               
               Conread position:218-420
               
               
               Cow position:chr1:1606129-1605918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):61, 41

               
               
               Conread position:219-335
               
               
               Cow position:chr1:64706499-64706615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:95
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):72, 45

               
               
               Conread position:219-380
               
               
               Cow position:chr1:31630281-31630114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):60, 40

               
               
               Conread position:219-401
               
               
               Cow position:chr1:78793997-78793810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):54, 39

               
               
               Conread position:219-414
               
               
               Cow position:chr1:731970-731764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):21, 43

               
               
               Conread position:219-417
               
               
               Cow position:chr1:5872771-5872565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):68, 5

               
               
               Conread position:219-419
               
               
               Cow position:chr1:52450777-52450974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):60, 40

               
               
               Conread position:220-413
               
               
               Cow position:chr1:34001054-34001248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):59, 44

               
               
               Conread position:220-414
               
               
               Cow position:chr1:96518700-96518908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):59, 44

               
               
               Conread position:220-415
               
               
               Cow position:chr1:81473162-81473365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):59, 34

               
               
               Conread position:220-416
               
               
               Cow position:chr1:76518429-76518633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):59, 44

               
               
               Conread position:220-419
               
               
               Cow position:chr1:40303558-40303759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):59, 44

               
               
               Conread position:220-420
               
               
               Cow position:chr1:37145293-37145498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):59, 38

               
               
               Conread position:220-421
               
               
               Cow position:chr1:20537212-20537415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):59, 38

               
               
               Conread position:220-421
               
               
               Cow position:chr1:82336685-82336884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):59, 39

               
               
               Conread position:221-344
               
               
               Cow position:chr1:12989289-12989415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):58, 37

               
               
               Conread position:221-404
               
               
               Cow position:chr1:95049856-95049669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):58, 30

               
               
               Conread position:221-408
               
               
               Cow position:chr1:69411690-69411495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):14, 44

               
               
               Conread position:221-414
               
               
               Cow position:chr1:4511991-4512177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):58, 43

               
               
               Conread position:221-414
               
               
               Cow position:chr1:49297659-49297857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):59, 37

               
               
               Conread position:221-415
               
               
               Cow position:chr1:81364268-81364470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):58, 38

               
               
               Conread position:221-422
               
               
               Cow position:chr1:12090358-12090554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):71, 38

               
               
               Conread position:221-423
               
               
               Cow position:chr1:87149807-87149600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):58, 38

               
               
               Conread position:222-336
               
               
               Cow position:chr1:46100831-46100716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):57, 37

               
               
               Conread position:222-362
               
               
               Cow position:chr1:79409460-79409602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):57, 34

               
               
               Conread position:222-384
               
               
               Cow position:chr1:81179339-81179174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):57, 37

               
               
               Conread position:222-401
               
               
               Cow position:chr1:38055493-38055313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):6, 38

               
               
               Conread position:222-411
               
               
               Cow position:chr1:85339396-85339581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):57, 36

               
               
               Conread position:222-414
               
               
               Cow position:chr1:15628291-15628485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):25, 30

               
               
               Conread position:222-417
               
               
               Cow position:chr1:98557110-98556908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):57, 37

               
               
               Conread position:222-423
               
               
               Cow position:chr1:31340762-31340551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):58, 37

               
               
               Conread position:223-402
               
               
               Cow position:chr1:81638558-81638733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):56, 36

               
               
               Conread position:226-413
               
               
               Cow position:chr1:77685968-77685773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):53, 33

               
               
               Conread position:226-417
               
               
               Cow position:chr1:64457978-64458182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):53, 33

               
               
               Conread position:226-417
               
               
               Cow position:chr1:73534628-73534432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):53, 33

               
               
               Conread position:226-421
               
               
               Cow position:chr1:94823379-94823175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):54, 33

               
               
               Conread position:226-421
               
               
               Cow position:chr1:101883381-101883178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):55, 33

               
               
               Conread position:226-423
               
               
               Cow position:chr1:15875673-15875875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):53, 40

               
               
               Conread position:227-421
               
               
               Cow position:chr1:25022061-25021865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):52, 32

               
               
               Conread position:228-401
               
               
               Cow position:chr1:40181610-40181428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):43, 31

               
               
               Conread position:228-401
               
               
               Cow position:chr1:63905244-63905071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):51, 31

               
               
               Conread position:228-423
               
               
               Cow position:chr1:39684129-39683926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):51, 36

               
               
               Conread position:228-423
               
               
               Cow position:chr1:89298095-89297891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):51, 31

               
               
               Conread position:228-423
               
               
               Cow position:chr1:89301704-89301500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):51, 31

               
               
               Conread position:228-423
               
               
               Cow position:chr1:95703820-95704019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):63, 30

               
               
               Conread position:230-383
               
               
               Cow position:chr1:70146894-70146736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):49, 38

               
               
               Conread position:230-419
               
               
               Cow position:chr1:36090202-36090003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):14, 77

               
               
               Conread position:230-421
               
               
               Cow position:chr1:54569715-54569914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):49, 29

               
               
               Conread position:234-369
               
               
               Cow position:chr1:67539580-67539720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):10, 26

               
               
               Conread position:234-413
               
               
               Cow position:chr1:102797977-102797794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):45, 24

               
               
               Conread position:234-415
               
               
               Cow position:chr1:32035689-32035506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):45, 25

               
               
               Conread position:234-419
               
               
               Cow position:chr1:32217263-32217449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):45, 25

               
               
               Conread position:234-421
               
               
               Cow position:chr1:31801899-31801707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):45, 133

               
               
               Conread position:234-421
               
               
               Cow position:chr1:47967002-47966807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):45, 24

               
               
               Conread position:234-423
               
               
               Cow position:chr1:48301430-48301235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):45, 32

               
               
               Conread position:237-414
               
               
               Cow position:chr1:4618719-4618536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):44, 27

               
               
               Conread position:239-343
               
               
               Cow position:chr1:51371793-51371687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:239-384
               
               
               Cow position:chr1:1802193-1802343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):40, 20

               
               
               Conread position:239-401
               
               
               Cow position:chr1:362777-362948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):40, 25

               
               
               Conread position:239-411
               
               
               Cow position:chr1:83683145-83682969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):40, 25

               
               
               Conread position:239-416
               
               
               Cow position:chr1:98742048-98742225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):47, 25

               
               
               Conread position:239-417
               
               
               Cow position:chr1:69378573-69378388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):40, 20

               
               
               Conread position:239-417
               
               
               Cow position:chr1:70044381-70044552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:239-418
               
               
               Cow position:chr1:11770210-11770031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):31, 41

               
               
               Conread position:239-418
               
               
               Cow position:chr1:90820451-90820270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):50, 20

               
               
               Conread position:239-420
               
               
               Cow position:chr1:92187983-92188171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):40, 20

               
               
               Conread position:239-421
               
               
               Cow position:chr1:1380023-1380214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):40, 20

               
               
               Conread position:239-421
               
               
               Cow position:chr1:63460904-63461092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):40, 20

               
               
               Conread position:239-421
               
               
               Cow position:chr1:89437692-89437515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):40, 19

               
               
               Conread position:239-422
               
               
               Cow position:chr1:22231674-22231865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):40, 25

               
               
               Conread position:239-423
               
               
               Cow position:chr1:100512923-100513112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):40, 20

               
               
               Conread position:240-344
               
               
               Cow position:chr1:76080834-76080937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:91
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):49, 19

               
               
               Conread position:240-384
               
               
               Cow position:chr1:81471382-81471524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):39, 19

               
               
               Conread position:240-418
               
               
               Cow position:chr1:40077821-40078001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):40, 18

               
               
               Conread position:240-420
               
               
               Cow position:chr1:100800742-100800557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):39, 90

               
               
               Conread position:240-421
               
               
               Cow position:chr1:94713138-94712950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):39, 19

               
               
               Conread position:240-423
               
               
               Cow position:chr1:84787297-84787475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):39, 15

               
               
               Conread position:241-384
               
               
               Cow position:chr1:23372887-23373034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):38, 18

               
               
               Conread position:241-413
               
               
               Cow position:chr1:60403794-60403974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):38, 17

               
               
               Conread position:241-415
               
               
               Cow position:chr1:22828542-22828366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):38, 18

               
               
               Conread position:241-421
               
               
               Cow position:chr1:79178656-79178844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):38, 18

               
               
               Conread position:242-423
               
               
               Cow position:chr1:87934242-87934065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):37, 17

               
               
               Conread position:244-422
               
               
               Cow position:chr1:64421572-64421750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):35, 20

               
               
               Conread position:245-401
               
               
               Cow position:chr1:43296687-43296521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):34, 14

               
               
               Conread position:245-402
               
               
               Cow position:chr1:91743432-91743269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:245-423
               
               
               Cow position:chr1:89146842-89146657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):34, 13

               
               
               Conread position:248-421
               
               
               Cow position:chr1:3666996-3666820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):31, 11

               
               
               Conread position:249-418
               
               
               Cow position:chr1:41022455-41022626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):43, 10

               
               
               Conread position:249-419
               
               
               Cow position:chr1:63212224-63212048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):30, 51

               
               
               Conread position:249-423
               
               
               Cow position:chr1:79001812-79001630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):30, 10

               
               
               Conread position:250-404
               
               
               Cow position:chr1:96362389-96362242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):29, 14

               
               
               Conread position:251-416
               
               
               Cow position:chr1:709862-709694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):28, 8

               
               
               Conread position:251-421
               
               
               Cow position:chr1:42796915-42797089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):28, 7

               
               
               Conread position:255-404
               
               
               Cow position:chr1:101439445-101439293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):21, 57

               
               
               Conread position:256-415
               
               
               Cow position:chr1:43379320-43379154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:256-418
               
               
               Cow position:chr1:71664855-71664684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:258-420
               
               
               Cow position:chr1:59551481-59551651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:260-422
               
               
               Cow position:chr1:75227274-75227110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):19, 80

               
               
               Conread position:261-423
               
               
               Cow position:chr1:100152325-100152499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:263-420
               
               
               Cow position:chr1:47190946-47190781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:264-418
               
               
               Cow position:chr1:54645477-54645634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):15, 125

               
               
               Conread position:264-423
               
               
               Cow position:chr1:79170103-79169937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:265-423
               
               
               Cow position:chr1:76222670-76222508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):26, 132

               
               
               Conread position:268-415
               
               
               Cow position:chr1:80423678-80423524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:270-423
               
               
               Cow position:chr1:66445018-66445171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):9, 77

               
               
               Conread position:271-413
               
               
               Cow position:chr1:33080755-33080605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):8, 53

               
               
               Conread position:278-404
               
               
               Cow position:chr1:67743671-67743542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):13, 69

               
               
               Conread position:278-413
               
               
               Cow position:chr1:64705964-64706107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:278-418
               
               
               Cow position:chr1:44814605-44814453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:278-421
               
               
               Cow position:chr1:65160193-65160344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:278-422
               
               
               Cow position:chr1:39095553-39095700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:290-423
               
               
               Cow position:chr1:8778257-8778123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):93, 55

               
               
               Conread position:291-415
               
               
               Cow position:chr1:101490267-101490399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):43, 0
Show alignments to all cow chromosomes.