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Cow genome map

           
Conread name:
           
rcmu25_l1.y1
        

               
Conread position:
               
72-422
               

               
Cow position:
               
chr29:3549465-3549813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
207, 107
               

               
Conread position:
               
76-341
               

               
Cow position:
               
chr29:32290464-32290733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
203, 178
               

               
Conread position:
               
76-386
               

               
Cow position:
               
chr29:28805614-28805923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
49, 62
               

               
Conread position:
               
80-331
               

               
Cow position:
               
chr29:6014982-6015237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
105, 179
               

               
Conread position:
               
81-340
               

               
Cow position:
               
chr29:5788886-5789149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
45, 178
               

               
Conread position:
               
82-423
               

               
Cow position:
               
chr29:3685650-3685313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 77
               

               
Conread position:
               
85-262
               

               
Cow position:
               
chr29:5445858-5445678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
62, 77
               

               
Conread position:
               
85-344
               

               
Cow position:
               
chr29:2263131-2262871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
89, 42
               

               
Conread position:
               
88-415
               

               
Cow position:
               
chr29:23389688-23389366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
88, 166
               

               
Conread position:
               
89-257
               

               
Cow position:
               
chr29:12004893-12004726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
37, 102
               

               
Conread position:
               
89-386
               

               
Cow position:
               
chr29:39131594-39131293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
102, 39
               

               
Conread position:
               
90-336
               

               
Cow position:
               
chr29:27563122-27562877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
189, 99
               

               
Conread position:
               
91-246
               

               
Cow position:
               
chr29:11489851-11489696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
98, 141
               

               
Conread position:
               
91-423
               

               
Cow position:
               
chr29:13028308-13028658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 164
               

               
Conread position:
               
92-420
               

               
Cow position:
               
chr29:25474792-25475137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
97, 166
               

               
Conread position:
               
93-343
               

               
Cow position:
               
chr29:21941472-21941724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
101, 91
               

               
Conread position:
               
93-343
               

               
Cow position:
               
chr29:42886424-42886665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
186, 45
               

               
Conread position:
               
93-404
               

               
Cow position:
               
chr29:21443468-21443152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 131
               

               
Conread position:
               
94-245
               

               
Cow position:
               
chr29:42886261-42886415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
94-305
               

               
Cow position:
               
chr29:25839568-25839782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
97, 174
               

               
Conread position:
               
95-319
               

               
Cow position:
               
chr29:9638442-9638221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
184, 84
               

               
Conread position:
               
95-341
               

               
Cow position:
               
chr29:22175562-22175802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
171, 96
               

               
Conread position:
               
95-413
               

               
Cow position:
               
chr29:5409265-5408944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 73
               

               
Conread position:
               
95-415
               

               
Cow position:
               
chr29:28775582-28775265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
184, 61
               

               
Conread position:
               
95-423
               

               
Cow position:
               
chr29:8862604-8862290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
28, 90
               

               
Conread position:
               
96-272
               

               
Cow position:
               
chr29:41747320-41747498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
99, 90
               

               
Conread position:
               
96-414
               

               
Cow position:
               
chr29:22068870-22068542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
92, 163
               

               
Conread position:
               
96-420
               

               
Cow position:
               
chr29:3711266-3711581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
183, 95
               

               
Conread position:
               
96-422
               

               
Cow position:
               
chr29:29769475-29769146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
85, 95
               

               
Conread position:
               
97-266
               

               
Cow position:
               
chr29:24119855-24119696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
97-331
               

               
Cow position:
               
chr29:4444590-4444829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
26, 163
               

               
Conread position:
               
97-345
               

               
Cow position:
               
chr29:17409212-17409460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
182, 82
               

               
Conread position:
               
97-361
               

               
Cow position:
               
chr29:12626102-12625834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
94, 161
               

               
Conread position:
               
97-402
               

               
Cow position:
               
chr29:12900670-12900366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
56, 49
               

               
Conread position:
               
98-287
               

               
Cow position:
               
chr29:9139290-9139487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
25, 166
               

               
Conread position:
               
98-319
               

               
Cow position:
               
chr29:2984766-2984989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
89, 156
               

               
Conread position:
               
98-344
               

               
Cow position:
               
chr29:6844750-6844508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
181, 67
               

               
Conread position:
               
98-384
               

               
Cow position:
               
chr29:363138-363417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
181, 79
               

               
Conread position:
               
98-384
               

               
Cow position:
               
chr29:5275374-5275085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
98, 36
               

               
Conread position:
               
98-384
               

               
Cow position:
               
chr29:29795507-29795214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
92, 105
               

               
Conread position:
               
98-415
               

               
Cow position:
               
chr29:35677669-35677341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
96, 88
               

               
Conread position:
               
98-417
               

               
Cow position:
               
chr29:17297012-17297340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 79
               

               
Conread position:
               
98-420
               

               
Cow position:
               
chr29:16272606-16272949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
77, 174
               

               
Conread position:
               
98-421
               

               
Cow position:
               
chr29:10018455-10018774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
90, 36
               

               
Conread position:
               
99-263
               

               
Cow position:
               
chr29:26042510-26042670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
96, 34
               

               
Conread position:
               
99-309
               

               
Cow position:
               
chr29:868654-868864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
180, 81
               

               
Conread position:
               
99-310
               

               
Cow position:
               
chr29:41364991-41365199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
180, 88
               

               
Conread position:
               
99-331
               

               
Cow position:
               
chr29:11005609-11005846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
41, 168
               

               
Conread position:
               
99-336
               

               
Cow position:
               
chr29:40299131-40298904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
180, 38
               

               
Conread position:
               
99-344
               

               
Cow position:
               
chr29:1022174-1022419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
178, 164
               

               
Conread position:
               
99-345
               

               
Cow position:
               
chr29:22936149-22936396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 138
               

               
Conread position:
               
99-383
               

               
Cow position:
               
chr29:87137-86839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
79, 161
               

               
Conread position:
               
99-417
               

               
Cow position:
               
chr29:29057062-29057381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 34
               

               
Conread position:
               
99-418
               

               
Cow position:
               
chr29:32799829-32799499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 123
               

               
Conread position:
               
99-419
               

               
Cow position:
               
chr29:4085200-4085501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
180, 41
               

               
Conread position:
               
99-419
               

               
Cow position:
               
chr29:40891817-40891503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 99
               

               
Conread position:
               
99-421
               

               
Cow position:
               
chr29:29942851-29942520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
80, 159
               

               
Conread position:
               
99-421
               

               
Cow position:
               
chr29:41530726-41531057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 159
               

               
Conread position:
               
100-249
               

               
Cow position:
               
chr29:39643057-39643204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
100-287
               

               
Cow position:
               
chr29:2071693-2071505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
143, 157
               

               
Conread position:
               
100-311
               

               
Cow position:
               
chr29:30188459-30188261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
91, 133
               

               
Conread position:
               
100-324
               

               
Cow position:
               
chr29:44008901-44008681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
95, 110
               

               
Conread position:
               
100-334
               

               
Cow position:
               
chr29:31926409-31926186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
189, 90
               

               
Conread position:
               
100-337
               

               
Cow position:
               
chr29:4334608-4334835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
100-342
               

               
Cow position:
               
chr29:6293594-6293359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
179, 90
               

               
Conread position:
               
100-345
               

               
Cow position:
               
chr29:6217668-6217420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
153, 87
               

               
Conread position:
               
100-384
               

               
Cow position:
               
chr29:3100377-3100099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
179, 78
               

               
Conread position:
               
100-412
               

               
Cow position:
               
chr29:12784076-12783758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
179, 85
               

               
Conread position:
               
100-412
               

               
Cow position:
               
chr29:31489201-31489522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 77
               

               
Conread position:
               
100-413
               

               
Cow position:
               
chr29:22778296-22777982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 24
               

               
Conread position:
               
100-413
               

               
Cow position:
               
chr29:28979601-28979317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
179, 56
               

               
Conread position:
               
100-414
               

               
Cow position:
               
chr29:2055938-2056259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 161
               

               
Conread position:
               
100-416
               

               
Cow position:
               
chr29:19428539-19428851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 84
               

               
Conread position:
               
100-418
               

               
Cow position:
               
chr29:12025590-12025276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 138
               

               
Conread position:
               
100-418
               

               
Cow position:
               
chr29:16657570-16657895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 167
               

               
Conread position:
               
100-419
               

               
Cow position:
               
chr29:11434003-11434317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
179, 46
               

               
Conread position:
               
100-419
               

               
Cow position:
               
chr29:36220408-36220747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
86, 40
               

               
Conread position:
               
100-421
               

               
Cow position:
               
chr29:16609622-16609956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
81, 164
               

               
Conread position:
               
100-421
               

               
Cow position:
               
chr29:26017622-26017294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 66
               

               
Conread position:
               
100-421
               

               
Cow position:
               
chr29:34744736-34744424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
95, 44
               

               
Conread position:
               
100-423
               

               
Cow position:
               
chr29:27858674-27858997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
90, 50
               

               
Conread position:
               
100-423
               

               
Cow position:
               
chr29:37599327-37599033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
179, 61
               

               
Conread position:
               
101-254
               

               
Cow position:
               
chr29:17223-17074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
93, 44
               

               
Conread position:
               
101-263
               

               
Cow position:
               
chr29:14484663-14484495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
101-277
               

               
Cow position:
               
chr29:17301410-17301589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
87, 157
               

               
Conread position:
               
101-281
               

               
Cow position:
               
chr29:43956774-43956951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
150, 85
               

               
Conread position:
               
101-304
               

               
Cow position:
               
chr29:4052103-4051907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
87, 32
               

               
Conread position:
               
101-317
               

               
Cow position:
               
chr29:23984078-23983858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
22, 158
               

               
Conread position:
               
101-319
               

               
Cow position:
               
chr29:28868517-28868742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
79, 60
               

               
Conread position:
               
101-322
               

               
Cow position:
               
chr29:27329773-27329994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
178, 155
               

               
Conread position:
               
101-334
               

               
Cow position:
               
chr29:11053978-11053745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
178, 86
               

               
Conread position:
               
101-334
               

               
Cow position:
               
chr29:43495935-43496154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
178, 32
               

               
Conread position:
               
101-341
               

               
Cow position:
               
chr29:32925979-32926225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
46, 34
               

               
Conread position:
               
101-343
               

               
Cow position:
               
chr29:25088634-25088865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
178, 26
               

               
Conread position:
               
101-343
               

               
Cow position:
               
chr29:26654156-26653920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
22, 50
               

               
Conread position:
               
101-347
               

               
Cow position:
               
chr29:24252119-24252362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
73, 48
               

               
Conread position:
               
101-356
               

               
Cow position:
               
chr29:4367601-4367863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
23, 163
               

               
Conread position:
               
101-371
               

               
Cow position:
               
chr29:1325321-1325591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
89, 150
               

               
Conread position:
               
101-376
               

               
Cow position:
               
chr29:20924786-20925066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
94, 37
               

               
Conread position:
               
101-400
               

               
Cow position:
               
chr29:13639489-13639184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 65
               

               
Conread position:
               
101-402
               

               
Cow position:
               
chr29:39111434-39111137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
28, 34
               

               
Conread position:
               
101-410
               

               
Cow position:
               
chr29:30440812-30441134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 160
               

               
Conread position:
               
101-411
               

               
Cow position:
               
chr29:17222294-17222613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 78
               

               
Conread position:
               
101-411
               

               
Cow position:
               
chr29:34745780-34745465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 127
               

               
Conread position:
               
101-412
               

               
Cow position:
               
chr29:17109849-17110151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
178, 67
               

               
Conread position:
               
101-412
               

               
Cow position:
               
chr29:28195632-28195335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 87
               

               
Conread position:
               
101-414
               

               
Cow position:
               
chr29:30227392-30227081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
178, 88
               

               
Conread position:
               
101-416
               

               
Cow position:
               
chr29:22162372-22162062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
78, 161
               

               
Conread position:
               
101-416
               

               
Cow position:
               
chr29:35501770-35501463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
178, 53
               

               
Conread position:
               
101-419
               

               
Cow position:
               
chr29:4520216-4520536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
88, 152
               

               
Conread position:
               
101-420
               

               
Cow position:
               
chr29:2744391-2744064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
77, 159
               

               
Conread position:
               
101-420
               

               
Cow position:
               
chr29:31674511-31674837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
83, 50
               

               
Conread position:
               
101-421
               

               
Cow position:
               
chr29:35291971-35292292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 41
               

               
Conread position:
               
101-423
               

               
Cow position:
               
chr29:22613307-22613630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
82, 158
               

               
Conread position:
               
102-322
               

               
Cow position:
               
chr29:19821168-19821385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
21, 86
               

               
Conread position:
               
102-331
               

               
Cow position:
               
chr29:18021798-18021572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
91, 36
               

               
Conread position:
               
102-336
               

               
Cow position:
               
chr29:25333580-25333345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
86, 57
               

               
Conread position:
               
102-340
               

               
Cow position:
               
chr29:39567569-39567802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
177, 88
               

               
Conread position:
               
102-384
               

               
Cow position:
               
chr29:38581858-38582136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
177, 66
               

               
Conread position:
               
102-404
               

               
Cow position:
               
chr29:24952569-24952876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
21, 89
               

               
Conread position:
               
102-405
               

               
Cow position:
               
chr29:1395477-1395762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
21, 53
               

               
Conread position:
               
102-413
               

               
Cow position:
               
chr29:16309624-16309920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
177, 154
               

               
Conread position:
               
102-414
               

               
Cow position:
               
chr29:21196769-21196453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 32
               

               
Conread position:
               
102-414
               

               
Cow position:
               
chr29:24292753-24293069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
110, 33
               

               
Conread position:
               
102-416
               

               
Cow position:
               
chr29:9709577-9709895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
127, 91
               

               
Conread position:
               
102-418
               

               
Cow position:
               
chr29:23697861-23698173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 59
               

               
Conread position:
               
102-421
               

               
Cow position:
               
chr29:37618187-37618514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 51
               

               
Conread position:
               
102-422
               

               
Cow position:
               
chr29:3825855-3826173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
177, 46
               

               
Conread position:
               
102-423
               

               
Cow position:
               
chr29:6337543-6337859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 155
               

               
Conread position:
               
103-237
               

               
Cow position:
               
chr29:26734912-26735045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
95, 63
               

               
Conread position:
               
103-277
               

               
Cow position:
               
chr29:18735759-18735584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
23, 75
               

               
Conread position:
               
103-287
               

               
Cow position:
               
chr29:36183164-36183347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
176, 87
               

               
Conread position:
               
103-328
               

               
Cow position:
               
chr29:1229492-1229715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
91, 31
               

               
Conread position:
               
103-331
               

               
Cow position:
               
chr29:37961096-37960865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
20, 47
               

               
Conread position:
               
103-336
               

               
Cow position:
               
chr29:9912055-9912290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
89, 156
               

               
Conread position:
               
103-344
               

               
Cow position:
               
chr29:40096847-40097086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
80, 31
               

               
Conread position:
               
103-378
               

               
Cow position:
               
chr29:465516-465238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
23, 88
               

               
Conread position:
               
103-384
               

               
Cow position:
               
chr29:44988897-44988638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
176, 34
               

               
Conread position:
               
103-413
               

               
Cow position:
               
chr29:11398042-11397714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
25, 89
               

               
Conread position:
               
103-416
               

               
Cow position:
               
chr29:18878613-18878281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
83, 50
               

               
Conread position:
               
103-417
               

               
Cow position:
               
chr29:38580859-38581195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
20, 158
               

               
Conread position:
               
103-418
               

               
Cow position:
               
chr29:7624055-7624369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
31, 60
               

               
Conread position:
               
103-420
               

               
Cow position:
               
chr29:4625115-4624792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
23, 77
               

               
Conread position:
               
103-420
               

               
Cow position:
               
chr29:15738460-15738144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
22, 75
               

               
Conread position:
               
103-421
               

               
Cow position:
               
chr29:3502449-3502768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
22, 157
               

               
Conread position:
               
103-421
               

               
Cow position:
               
chr29:23844717-23845046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
23, 77
               

               
Conread position:
               
103-421
               

               
Cow position:
               
chr29:26269948-26270274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
23, 155
               

               
Conread position:
               
104-336
               

               
Cow position:
               
chr29:17154650-17154894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
19, 161
               

               
Conread position:
               
104-344
               

               
Cow position:
               
chr29:11705007-11705237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
184, 62
               

               
Conread position:
               
104-419
               

               
Cow position:
               
chr29:25284580-25284259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
22, 76
               

               
Conread position:
               
104-421
               

               
Cow position:
               
chr29:4120732-4121063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 157
               

               
Conread position:
               
104-421
               

               
Cow position:
               
chr29:35458894-35458563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
49, 158
               

               
Conread position:
               
105-320
               

               
Cow position:
               
chr29:10235248-10235034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
84, 146
               

               
Conread position:
               
105-331
               

               
Cow position:
               
chr29:356206-356432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
85, 32
               

               
Conread position:
               
105-421
               

               
Cow position:
               
chr29:23874343-23874668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 44
               

               
Conread position:
               
106-330
               

               
Cow position:
               
chr29:750023-749797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
19, 32
               

               
Conread position:
               
106-385
               

               
Cow position:
               
chr29:10653227-10653489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
173, 134
               

               
Conread position:
               
106-410
               

               
Cow position:
               
chr29:32655549-32655248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
17, 154
               

               
Conread position:
               
106-412
               

               
Cow position:
               
chr29:707066-706777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
20, 146
               

               
Conread position:
               
107-354
               

               
Cow position:
               
chr29:26416240-26416485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
82, 22
               

               
Conread position:
               
107-421
               

               
Cow position:
               
chr29:34297684-34297365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 151
               

               
Conread position:
               
107-423
               

               
Cow position:
               
chr29:24604777-24605104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
50, 63
               

               
Conread position:
               
108-404
               

               
Cow position:
               
chr29:31928869-31929175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 162
               

               
Conread position:
               
108-418
               

               
Cow position:
               
chr29:7310576-7310867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
181, 46
               

               
Conread position:
               
109-416
               

               
Cow position:
               
chr29:26778769-26779078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
74, 39
               

               
Conread position:
               
110-345
               

               
Cow position:
               
chr29:847751-847517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
164, 58
               

               
Conread position:
               
110-415
               

               
Cow position:
               
chr29:26477429-26477745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
85, 149
               

               
Conread position:
               
111-344
               

               
Cow position:
               
chr29:40959956-40959724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
101, 46
               

               
Conread position:
               
113-252
               

               
Cow position:
               
chr29:29558535-29558402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
113-333
               

               
Cow position:
               
chr29:20903392-20903177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
72, 38
               

               
Conread position:
               
113-336
               

               
Cow position:
               
chr29:29176722-29176501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
166, 88
               

               
Conread position:
               
113-342
               

               
Cow position:
               
chr29:40994997-40994769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
166, 78
               

               
Conread position:
               
113-346
               

               
Cow position:
               
chr29:44378522-44378293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
166, 149
               

               
Conread position:
               
113-384
               

               
Cow position:
               
chr29:45589696-45589434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
74, 32
               

               
Conread position:
               
113-385
               

               
Cow position:
               
chr29:17168298-17168572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
64, 91
               

               
Conread position:
               
113-412
               

               
Cow position:
               
chr29:5046545-5046850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 141
               

               
Conread position:
               
113-413
               

               
Cow position:
               
chr29:11915713-11916020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
75, 142
               

               
Conread position:
               
113-414
               

               
Cow position:
               
chr29:35084329-35084024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
76, 61
               

               
Conread position:
               
113-418
               

               
Cow position:
               
chr29:36530760-36531070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
84, 46
               

               
Conread position:
               
113-421
               

               
Cow position:
               
chr29:28674814-28674496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
65, 81
               

               
Conread position:
               
113-423
               

               
Cow position:
               
chr29:8669260-8669559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
166, 20
               

               
Conread position:
               
114-421
               

               
Cow position:
               
chr29:29551746-29552053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
165, 116
               

               
Conread position:
               
114-423
               

               
Cow position:
               
chr29:1007709-1008029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
9, 116
               

               
Conread position:
               
115-340
               

               
Cow position:
               
chr29:29512246-29512021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
164, 144
               

               
Conread position:
               
115-386
               

               
Cow position:
               
chr29:30713813-30713549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
79, 19
               

               
Conread position:
               
116-377
               

               
Cow position:
               
chr29:13373195-13373459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
140, 71
               

               
Conread position:
               
116-413
               

               
Cow position:
               
chr29:21645220-21645516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
163, 65
               

               
Conread position:
               
118-285
               

               
Cow position:
               
chr29:27652731-27652564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
68, 99
               

               
Conread position:
               
118-285
               

               
Cow position:
               
chr29:35485146-35485310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
93, 61
               

               
Conread position:
               
118-325
               

               
Cow position:
               
chr29:24578756-24578968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
40, 142
               

               
Conread position:
               
118-330
               

               
Cow position:
               
chr29:5186598-5186383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
68, 28
               

               
Conread position:
               
118-343
               

               
Cow position:
               
chr29:18404215-18403994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
161, 25
               

               
Conread position:
               
118-412
               

               
Cow position:
               
chr29:10838848-10839137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
139, 73
               

               
Conread position:
               
118-420
               

               
Cow position:
               
chr29:26334488-26334183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
161, 19
               

               
Conread position:
               
118-423
               

               
Cow position:
               
chr29:12680056-12680367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
77, 57
               

               
Conread position:
               
118-423
               

               
Cow position:
               
chr29:27833887-27834198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
161, 56
               

               
Conread position:
               
120-331
               

               
Cow position:
               
chr29:22721275-22721483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
71, 9
               

               
Conread position:
               
120-421
               

               
Cow position:
               
chr29:4492340-4492638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
159, 59
               

               
Conread position:
               
121-338
               

               
Cow position:
               
chr29:13372566-13372781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
158, 69
               

               
Conread position:
               
121-341
               

               
Cow position:
               
chr29:29149571-29149792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
51, 68
               

               
Conread position:
               
121-351
               

               
Cow position:
               
chr29:6286257-6286031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
156, 59
               

               
Conread position:
               
121-414
               

               
Cow position:
               
chr29:24035501-24035211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
168, 133
               

               
Conread position:
               
121-415
               

               
Cow position:
               
chr29:40583694-40583986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
158, 71
               

               
Conread position:
               
122-413
               

               
Cow position:
               
chr29:35405890-35405592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
59, 125
               

               
Conread position:
               
122-423
               

               
Cow position:
               
chr29:8293014-8292704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
89, 68
               

               
Conread position:
               
123-328
               

               
Cow position:
               
chr29:27873507-27873709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
65, 38
               

               
Conread position:
               
123-413
               

               
Cow position:
               
chr29:22690129-22690425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
156, 63
               

               
Conread position:
               
123-423
               

               
Cow position:
               
chr29:34773831-34773540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
156, 56
               

               
Conread position:
               
124-315
               

               
Cow position:
               
chr29:32521774-32521965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
44, 20
               

               
Conread position:
               
124-344
               

               
Cow position:
               
chr29:40852837-40853054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
155, 26
               

               
Conread position:
               
126-382
               

               
Cow position:
               
chr29:44236358-44236606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
63, 8
               

               
Conread position:
               
127-377
               

               
Cow position:
               
chr29:42771556-42771791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
152, 40
               

               
Conread position:
               
129-331
               

               
Cow position:
               
chr29:13127213-13127009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
135, 55
               

               
Conread position:
               
129-345
               

               
Cow position:
               
chr29:8005014-8004802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
150, 95
               

               
Conread position:
               
129-411
               

               
Cow position:
               
chr29:40117478-40117762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
24, 5
               

               
Conread position:
               
130-420
               

               
Cow position:
               
chr29:8926553-8926244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
60, 20
               

               
Conread position:
               
131-412
               

               
Cow position:
               
chr29:23813125-23812851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
148, 25
               

               
Conread position:
               
136-322
               

               
Cow position:
               
chr29:18012470-18012660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
43, 123
               

               
Conread position:
               
137-404
               

               
Cow position:
               
chr29:10058623-10058354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
51, 130
               

               
Conread position:
               
138-331
               

               
Cow position:
               
chr29:694083-693898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
141, 49
               

               
Conread position:
               
138-343
               

               
Cow position:
               
chr29:11647007-11647217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
55, 84
               

               
Conread position:
               
138-384
               

               
Cow position:
               
chr29:27009334-27009586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
141, 84
               

               
Conread position:
               
138-401
               

               
Cow position:
               
chr29:7124733-7125007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
26, 53
               

               
Conread position:
               
138-404
               

               
Cow position:
               
chr29:5892760-5893035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
27, 56
               

               
Conread position:
               
138-416
               

               
Cow position:
               
chr29:19949219-19949507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
30, 122
               

               
Conread position:
               
138-417
               

               
Cow position:
               
chr29:19762188-19762466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
55, 41
               

               
Conread position:
               
138-421
               

               
Cow position:
               
chr29:32894186-32894463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
141, 39
               

               
Conread position:
               
139-336
               

               
Cow position:
               
chr29:43251249-43251049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
52, 29
               

               
Conread position:
               
139-415
               

               
Cow position:
               
chr29:28993779-28994056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
79, 41
               

               
Conread position:
               
139-421
               

               
Cow position:
               
chr29:22647763-22648053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
47, 118
               

               
Conread position:
               
140-288
               

               
Cow position:
               
chr29:13486869-13487018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
54, 117
               

               
Conread position:
               
140-329
               

               
Cow position:
               
chr29:463738-463543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
52, 117
               

               
Conread position:
               
140-343
               

               
Cow position:
               
chr29:22519210-22519004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
47, 118
               

               
Conread position:
               
140-357
               

               
Cow position:
               
chr29:31813868-31814082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
139, 43
               

               
Conread position:
               
140-398
               

               
Cow position:
               
chr29:18556585-18556850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
26, 120
               

               
Conread position:
               
140-405
               

               
Cow position:
               
chr29:15947091-15947359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 23
               

               
Conread position:
               
140-416
               

               
Cow position:
               
chr29:20167342-20167624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
54, 119
               

               
Conread position:
               
141-343
               

               
Cow position:
               
chr29:13867291-13867088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
45, 114
               

               
Conread position:
               
141-420
               

               
Cow position:
               
chr29:19250269-19250549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
148, 24
               

               
Conread position:
               
141-421
               

               
Cow position:
               
chr29:36248956-36249244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
48, 9
               

               
Conread position:
               
144-419
               

               
Cow position:
               
chr29:25737494-25737215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
42, 114
               

               
Conread position:
               
144-423
               

               
Cow position:
               
chr29:27668739-27668445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
37, 112
               

               
Conread position:
               
145-264
               

               
Cow position:
               
chr29:28559268-28559387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
145-348
               

               
Cow position:
               
chr29:7103480-7103686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
54, 111
               

               
Conread position:
               
145-408
               

               
Cow position:
               
chr29:38348106-38347841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
61, 42
               

               
Conread position:
               
146-336
               

               
Cow position:
               
chr29:16195768-16195956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
65, 45
               

               
Conread position:
               
146-423
               

               
Cow position:
               
chr29:41112949-41112681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
133, 40
               

               
Conread position:
               
147-341
               

               
Cow position:
               
chr29:5210413-5210612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
36, 121
               

               
Conread position:
               
147-414
               

               
Cow position:
               
chr29:31786597-31786873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
86, 44
               

               
Conread position:
               
148-423
               

               
Cow position:
               
chr29:23825596-23825870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
48, 196
               

               
Conread position:
               
150-384
               

               
Cow position:
               
chr29:40633576-40633819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
129, 37
               

               
Conread position:
               
151-366
               

               
Cow position:
               
chr29:7966170-7966393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
38, 114
               

               
Conread position:
               
151-423
               

               
Cow position:
               
chr29:16290655-16290931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
37, 106
               

               
Conread position:
               
152-399
               

               
Cow position:
               
chr29:36632930-36632676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
36, 25
               

               
Conread position:
               
152-420
               

               
Cow position:
               
chr29:32733230-32733507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
127, 107
               

               
Conread position:
               
153-343
               

               
Cow position:
               
chr29:12309942-12310131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
126, 26
               

               
Conread position:
               
153-356
               

               
Cow position:
               
chr29:30351002-30350791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
40, 106
               

               
Conread position:
               
154-421
               

               
Cow position:
               
chr29:32656365-32656642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
42, 106
               

               
Conread position:
               
154-422
               

               
Cow position:
               
chr29:24624180-24624449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
34, 79
               

               
Conread position:
               
155-415
               

               
Cow position:
               
chr29:17462851-17462579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
94, 137
               

               
Conread position:
               
156-331
               

               
Cow position:
               
chr29:4691457-4691277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
29, 108
               

               
Conread position:
               
156-419
               

               
Cow position:
               
chr29:27911527-27911796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
8, 82
               

               
Conread position:
               
156-420
               

               
Cow position:
               
chr29:27926710-27926979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
8, 82
               

               
Conread position:
               
157-404
               

               
Cow position:
               
chr29:1011637-1011404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
131, 30
               

               
Conread position:
               
157-419
               

               
Cow position:
               
chr29:5995164-5994884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
31, 125
               

               
Conread position:
               
157-421
               

               
Cow position:
               
chr29:42630058-42630323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
122, 34
               

               
Conread position:
               
158-419
               

               
Cow position:
               
chr29:501137-501406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
121, 40
               

               
Conread position:
               
161-411
               

               
Cow position:
               
chr29:43544661-43544409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
118, 30
               

               
Conread position:
               
161-415
               

               
Cow position:
               
chr29:17236376-17236623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
48, 28
               

               
Conread position:
               
165-384
               

               
Cow position:
               
chr29:23825270-23825046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
27, 97
               

               
Conread position:
               
168-414
               

               
Cow position:
               
chr29:19756382-19756636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
88, 22
               

               
Conread position:
               
172-329
               

               
Cow position:
               
chr29:19559070-19558910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
10, 86
               

               
Conread position:
               
172-342
               

               
Cow position:
               
chr29:11042382-11042550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
7, 85
               

               
Conread position:
               
176-323
               

               
Cow position:
               
chr29:30918503-30918652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
17, 79
               

               
Conread position:
               
176-415
               

               
Cow position:
               
chr29:35258940-35259181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
103, 78
               

               
Conread position:
               
177-421
               

               
Cow position:
               
chr29:5568443-5568698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
13, 89
               

               
Conread position:
               
178-413
               

               
Cow position:
               
chr29:5520529-5520286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 79
               

               
Conread position:
               
179-322
               

               
Cow position:
               
chr29:8686287-8686432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
17, 78
               

               
Conread position:
               
179-384
               

               
Cow position:
               
chr29:27524879-27524667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
16, 26
               

               
Conread position:
               
181-384
               

               
Cow position:
               
chr29:5769756-5769957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
72, 9
               

               
Conread position:
               
182-412
               

               
Cow position:
               
chr29:36357087-36357326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
9, 74
               

               
Conread position:
               
184-414
               

               
Cow position:
               
chr29:26540578-26540340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
9, 76
               

               
Conread position:
               
185-413
               

               
Cow position:
               
chr29:38858250-38858014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
12, 70
               

               
Conread position:
               
186-402
               

               
Cow position:
               
chr29:40791275-40791484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
93, 63
               

               
Conread position:
               
186-415
               

               
Cow position:
               
chr29:44938025-44937795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
57, 71
               

               
Conread position:
               
186-418
               

               
Cow position:
               
chr29:32307587-32307362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
11, 69
               

               
Conread position:
               
186-421
               

               
Cow position:
               
chr29:20527199-20526956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
10, 71
               

               
Conread position:
               
187-421
               

               
Cow position:
               
chr29:30827372-30827614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
92, 72
               

               
Conread position:
               
189-420
               

               
Cow position:
               
chr29:16278955-16279182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
5, 67
               

               
Conread position:
               
191-344
               

               
Cow position:
               
chr29:42883987-42883833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
66, 8
               

               
Conread position:
               
191-404
               

               
Cow position:
               
chr29:4070598-4070809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
88, 58
               

               
Conread position:
               
191-414
               

               
Cow position:
               
chr29:22720681-22720448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
21, 31
               

               
Conread position:
               
191-421
               

               
Cow position:
               
chr29:1933601-1933363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
87, 65
               

               
Conread position:
               
191-422
               

               
Cow position:
               
chr29:31981801-31982029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
88, 65
               

               
Conread position:
               
192-384
               

               
Cow position:
               
chr29:44684074-44684263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
87, 32
               

               
Conread position:
               
192-412
               

               
Cow position:
               
chr29:396384-396600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
87, 57
               

               
Conread position:
               
192-423
               

               
Cow position:
               
chr29:31934350-31934585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
83, 64
               

               
Conread position:
               
193-344
               

               
Cow position:
               
chr29:16365916-16365761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
51, 7
               

               
Conread position:
               
194-414
               

               
Cow position:
               
chr29:24188092-24187864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
85, 60
               

               
Conread position:
               
194-421
               

               
Cow position:
               
chr29:28420728-28420963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
16, 66
               

               
Conread position:
               
195-401
               

               
Cow position:
               
chr29:34359847-34359640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
11, 37
               

               
Conread position:
               
195-402
               

               
Cow position:
               
chr29:9310574-9310790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
74, 63
               

               
Conread position:
               
195-403
               

               
Cow position:
               
chr29:4423465-4423262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
84, 61
               

               
Conread position:
               
196-419
               

               
Cow position:
               
chr29:6636060-6636283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
80, 23
               

               
Conread position:
               
197-423
               

               
Cow position:
               
chr29:31651387-31651611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
82, 117
               

               
Conread position:
               
198-413
               

               
Cow position:
               
chr29:32656115-32655895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
77, 60
               

               
Conread position:
               
198-423
               

               
Cow position:
               
chr29:8163850-8163619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
81, 36
               

               
Conread position:
               
200-343
               

               
Cow position:
               
chr29:1220152-1220008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
79, 59
               

               
Conread position:
               
200-421
               

               
Cow position:
               
chr29:30294886-30294665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
79, 54
               

               
Conread position:
               
201-408
               

               
Cow position:
               
chr29:3292928-3293136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
78, 55
               

               
Conread position:
               
202-422
               

               
Cow position:
               
chr29:38754958-38754731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
66, 54
               

               
Conread position:
               
203-417
               

               
Cow position:
               
chr29:9378619-9378837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
76, 56
               

               
Conread position:
               
204-382
               

               
Cow position:
               
chr29:24051398-24051214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
87, 60
               

               
Conread position:
               
204-419
               

               
Cow position:
               
chr29:19176930-19176710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
71, 55
               

               
Conread position:
               
206-419
               

               
Cow position:
               
chr29:16200493-16200271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
73, 53
               

               
Conread position:
               
208-414
               

               
Cow position:
               
chr29:36781317-36781110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
71, 51
               

               
Conread position:
               
209-408
               

               
Cow position:
               
chr29:23819404-23819191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
13, 57
               

               
Conread position:
               
214-402
               

               
Cow position:
               
chr29:23913400-23913210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
65, 52
               

               
Conread position:
               
219-412
               

               
Cow position:
               
chr29:629536-629735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
60, 40
               

               
Conread position:
               
219-412
               

               
Cow position:
               
chr29:4441207-4441008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
28, 40
               

               
Conread position:
               
219-421
               

               
Cow position:
               
chr29:4023002-4023202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
72, 36
               

               
Conread position:
               
219-421
               

               
Cow position:
               
chr29:14375883-14375673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
60, 40
               

               
Conread position:
               
220-418
               

               
Cow position:
               
chr29:14576858-14577060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
59, 35
               

               
Conread position:
               
221-345
               

               
Cow position:
               
chr29:19060082-19059958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
58, 38
               

               
Conread position:
               
221-417
               

               
Cow position:
               
chr29:19420613-19420417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
58, 37
               

               
Conread position:
               
222-412
               

               
Cow position:
               
chr29:19187027-19187224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
57, 33
               

               
Conread position:
               
222-420
               

               
Cow position:
               
chr29:25793147-25793347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
61, 37
               

               
Conread position:
               
223-384
               

               
Cow position:
               
chr29:24365894-24365731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
56, 36
               

               
Conread position:
               
226-416
               

               
Cow position:
               
chr29:17436756-17436948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
116, 33
               

               
Conread position:
               
226-421
               

               
Cow position:
               
chr29:26211057-26211259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
53, 33
               

               
Conread position:
               
233-421
               

               
Cow position:
               
chr29:14746792-14746984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
46, 26
               

               
Conread position:
               
234-422
               

               
Cow position:
               
chr29:8799002-8798804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
45, 30
               

               
Conread position:
               
237-418
               

               
Cow position:
               
chr29:43088325-43088509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
42, 10
               

               
Conread position:
               
237-421
               

               
Cow position:
               
chr29:27042290-27042477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
42, 10
               

               
Conread position:
               
239-421
               

               
Cow position:
               
chr29:25432470-25432660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
7, 26
               

               
Conread position:
               
239-423
               

               
Cow position:
               
chr29:32215727-32215913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
40, 9
               

               
Conread position:
               
240-418
               

               
Cow position:
               
chr29:10203791-10203972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
39, 19
               

               
Conread position:
               
241-357
               

               
Cow position:
               
chr29:19061754-19061638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
38, 17
               

               
Conread position:
               
242-411
               

               
Cow position:
               
chr29:23142313-23142136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
37, 16
               

               
Conread position:
               
242-420
               

               
Cow position:
               
chr29:35189628-35189814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
37, 17
               

               
Conread position:
               
242-422
               

               
Cow position:
               
chr29:11685185-11685376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
242-423
               

               
Cow position:
               
chr29:11894719-11894909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
41, 17
               

               
Conread position:
               
242-423
               

               
Cow position:
               
chr29:16735245-16735435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
37, 16
               

               
Conread position:
               
244-420
               

               
Cow position:
               
chr29:17282091-17282267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
35, 20
               

               
Conread position:
               
245-411
               

               
Cow position:
               
chr29:42404971-42405145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
34, 13
               

               
Conread position:
               
246-401
               

               
Cow position:
               
chr29:22652348-22652505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
37, 18
               

               
Conread position:
               
246-418
               

               
Cow position:
               
chr29:7040848-7040664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
247-402
               

               
Cow position:
               
chr29:10192013-10191858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
26, 12
               

               
Conread position:
               
247-415
               

               
Cow position:
               
chr29:11081370-11081193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
32, 15
               

               
Conread position:
               
247-423
               

               
Cow position:
               
chr29:7414526-7414703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
29, 119
               

               
Conread position:
               
248-384
               

               
Cow position:
               
chr29:28257168-28257308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
31, 16
               

               
Conread position:
               
255-422
               

               
Cow position:
               
chr29:37293069-37293235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
24, 80
               

               
Conread position:
               
256-414
               

               
Cow position:
               
chr29:4484130-4484296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
256-421
               

               
Cow position:
               
chr29:2219421-2219594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
256-423
               

               
Cow position:
               
chr29:2414718-2414548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
23, 133
               

               
Conread position:
               
259-421
               

               
Cow position:
               
chr29:23678746-23678908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
20, 75
               

               
Conread position:
               
259-423
               

               
Cow position:
               
chr29:22019150-22018978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
261-413
               

               
Cow position:
               
chr29:10994551-10994709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
268-421
               

               
Cow position:
               
chr29:41094163-41094322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
268-423
               

               
Cow position:
               
chr29:18605614-18605459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
11, 38
               

               
Conread position:
               
278-416
               

               
Cow position:
               
chr29:8841388-8841248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
13, 73
               

               
Conread position:
               
278-418
               

               
Cow position:
               
chr29:27881899-27882046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
278-421
               

               
Cow position:
               
chr29:24119443-24119292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
278-423
               

               
Cow position:
               
chr29:4741334-4741181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
285-404
               

               
Cow position:
               
chr29:10658451-10658329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
291-421
               

               
Cow position:
               
chr29:26777079-26777216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
299-415
               

               
Cow position:
               
chr29:36830606-36830722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
300-423
               

               
Cow position:
               
chr29:31835352-31835477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
85, 37
               
Show alignments to all cow chromosomes.