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Cow genome map

           
Conread name:
           
rcmu25_l1.y1
        

               
Conread position:
               
67-329
               

               
Cow position:
               
chr5:75437013-75436751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
85, 90
               

               
Conread position:
               
81-421
               

               
Cow position:
               
chr5:56137032-56136687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
105, 53
               

               
Conread position:
               
81-423
               

               
Cow position:
               
chr5:33833931-33834277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 99
               

               
Conread position:
               
83-224
               

               
Cow position:
               
chr5:59257783-59257922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
83-419
               

               
Cow position:
               
chr5:15364159-15364503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
100, 69
               

               
Conread position:
               
84-421
               

               
Cow position:
               
chr5:35319666-35319326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
40, 51
               

               
Conread position:
               
85-285
               

               
Cow position:
               
chr5:57640076-57639882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
103, 141
               

               
Conread position:
               
85-348
               

               
Cow position:
               
chr5:49685378-49685121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 102
               

               
Conread position:
               
88-336
               

               
Cow position:
               
chr5:47323360-47323606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 99
               

               
Conread position:
               
89-414
               

               
Cow position:
               
chr5:15479021-15479356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 49
               

               
Conread position:
               
90-331
               

               
Cow position:
               
chr5:41604523-41604762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
99, 44
               

               
Conread position:
               
90-402
               

               
Cow position:
               
chr5:17555135-17554820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
107, 73
               

               
Conread position:
               
90-408
               

               
Cow position:
               
chr5:4552043-4552356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
190, 104
               

               
Conread position:
               
91-295
               

               
Cow position:
               
chr5:4617267-4617469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
90, 46
               

               
Conread position:
               
91-413
               

               
Cow position:
               
chr5:872946-873268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
184, 81
               

               
Conread position:
               
91-421
               

               
Cow position:
               
chr5:11427337-11427002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 175
               

               
Conread position:
               
91-421
               

               
Cow position:
               
chr5:57527020-57526693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 96
               

               
Conread position:
               
92-228
               

               
Cow position:
               
chr5:29860246-29860386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
92-341
               

               
Cow position:
               
chr5:54086442-54086687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
187, 91
               

               
Conread position:
               
92-344
               

               
Cow position:
               
chr5:458390-458640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 97
               

               
Conread position:
               
92-348
               

               
Cow position:
               
chr5:62985427-62985668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
225, 45
               

               
Conread position:
               
92-410
               

               
Cow position:
               
chr5:56467599-56467894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
187, 88
               

               
Conread position:
               
92-416
               

               
Cow position:
               
chr5:14904167-14903837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 41
               

               
Conread position:
               
93-270
               

               
Cow position:
               
chr5:54713831-54713656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
160, 0
               

               
Conread position:
               
93-343
               

               
Cow position:
               
chr5:19523800-19524051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
102, 83
               

               
Conread position:
               
93-423
               

               
Cow position:
               
chr5:11668285-11667947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 106
               

               
Conread position:
               
94-343
               

               
Cow position:
               
chr5:37808768-37808512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 63
               

               
Conread position:
               
94-362
               

               
Cow position:
               
chr5:26094261-26093991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
97, 58
               

               
Conread position:
               
94-419
               

               
Cow position:
               
chr5:21617358-21617687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
102, 79
               

               
Conread position:
               
94-422
               

               
Cow position:
               
chr5:29097268-29097597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
99, 82
               

               
Conread position:
               
95-310
               

               
Cow position:
               
chr5:61840094-61840310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
184, 89
               

               
Conread position:
               
95-336
               

               
Cow position:
               
chr5:3639584-3639353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
184, 99
               

               
Conread position:
               
95-339
               

               
Cow position:
               
chr5:63987543-63987298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 38
               

               
Conread position:
               
95-343
               

               
Cow position:
               
chr5:50215653-50215413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
184, 82
               

               
Conread position:
               
95-404
               

               
Cow position:
               
chr5:30845014-30845323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
28, 60
               

               
Conread position:
               
95-418
               

               
Cow position:
               
chr5:7057498-7057166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 100
               

               
Conread position:
               
95-422
               

               
Cow position:
               
chr5:44848118-44847791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
142, 89
               

               
Conread position:
               
96-287
               

               
Cow position:
               
chr5:69520796-69520985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
88, 46
               

               
Conread position:
               
96-348
               

               
Cow position:
               
chr5:59115289-59115537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
31, 92
               

               
Conread position:
               
96-384
               

               
Cow position:
               
chr5:34050019-34050302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
90, 163
               

               
Conread position:
               
96-404
               

               
Cow position:
               
chr5:53946798-53947116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 162
               

               
Conread position:
               
96-411
               

               
Cow position:
               
chr5:12761209-12760896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
99, 72
               

               
Conread position:
               
96-421
               

               
Cow position:
               
chr5:48154568-48154229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
72, 38
               

               
Conread position:
               
96-421
               

               
Cow position:
               
chr5:64140438-64140772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 41
               

               
Conread position:
               
96-423
               

               
Cow position:
               
chr5:28946161-28945843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
27, 145
               

               
Conread position:
               
96-423
               

               
Cow position:
               
chr5:35969445-35969777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 31
               

               
Conread position:
               
97-256
               

               
Cow position:
               
chr5:2500280-2500116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
97-285
               

               
Cow position:
               
chr5:34192806-34192998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
92, 41
               

               
Conread position:
               
97-315
               

               
Cow position:
               
chr5:21920279-21920494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
89, 156
               

               
Conread position:
               
97-339
               

               
Cow position:
               
chr5:13717663-13717424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
182, 83
               

               
Conread position:
               
97-384
               

               
Cow position:
               
chr5:54350460-54350177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 162
               

               
Conread position:
               
97-420
               

               
Cow position:
               
chr5:2309652-2309324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 64
               

               
Conread position:
               
98-303
               

               
Cow position:
               
chr5:57561425-57561634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
92, 157
               

               
Conread position:
               
98-308
               

               
Cow position:
               
chr5:65883868-65883656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
97, 78
               

               
Conread position:
               
98-332
               

               
Cow position:
               
chr5:65887101-65886869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
181, 79
               

               
Conread position:
               
98-343
               

               
Cow position:
               
chr5:4032087-4031835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
98-384
               

               
Cow position:
               
chr5:33414504-33414214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
87, 159
               

               
Conread position:
               
98-384
               

               
Cow position:
               
chr5:47704222-47703931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
31, 94
               

               
Conread position:
               
98-384
               

               
Cow position:
               
chr5:64137159-64137452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
88, 160
               

               
Conread position:
               
98-384
               

               
Cow position:
               
chr5:64168332-64168043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
87, 160
               

               
Conread position:
               
98-384
               

               
Cow position:
               
chr5:66815665-66815396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
181, 81
               

               
Conread position:
               
98-397
               

               
Cow position:
               
chr5:46080230-46079929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
65, 40
               

               
Conread position:
               
98-420
               

               
Cow position:
               
chr5:28330428-28330107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
170, 78
               

               
Conread position:
               
98-421
               

               
Cow position:
               
chr5:21525076-21525394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
181, 79
               

               
Conread position:
               
98-421
               

               
Cow position:
               
chr5:31469677-31469357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
181, 82
               

               
Conread position:
               
98-421
               

               
Cow position:
               
chr5:43371290-43370959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
90, 127
               

               
Conread position:
               
98-421
               

               
Cow position:
               
chr5:44049606-44049934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
85, 104
               

               
Conread position:
               
98-421
               

               
Cow position:
               
chr5:61576449-61576780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
58, 77
               

               
Conread position:
               
98-423
               

               
Cow position:
               
chr5:30092718-30092392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
136, 93
               

               
Conread position:
               
99-231
               

               
Cow position:
               
chr5:56469918-56469784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
69, 77
               

               
Conread position:
               
99-243
               

               
Cow position:
               
chr5:7140202-7140056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
99-256
               

               
Cow position:
               
chr5:21964193-21964352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
99-261
               

               
Cow position:
               
chr5:54404985-54404822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
87, 135
               

               
Conread position:
               
99-285
               

               
Cow position:
               
chr5:39094460-39094642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
24, 90
               

               
Conread position:
               
99-335
               

               
Cow position:
               
chr5:72564668-72564907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
32, 37
               

               
Conread position:
               
99-344
               

               
Cow position:
               
chr5:23678796-23678551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 156
               

               
Conread position:
               
99-344
               

               
Cow position:
               
chr5:54311240-54311488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
24, 162
               

               
Conread position:
               
99-344
               

               
Cow position:
               
chr5:55019201-55019443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
180, 59
               

               
Conread position:
               
99-351
               

               
Cow position:
               
chr5:21040067-21039826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
190, 69
               

               
Conread position:
               
99-356
               

               
Cow position:
               
chr5:7723573-7723831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
27, 39
               

               
Conread position:
               
99-414
               

               
Cow position:
               
chr5:12901823-12902146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
117, 101
               

               
Conread position:
               
99-414
               

               
Cow position:
               
chr5:48143879-48143562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
109, 91
               

               
Conread position:
               
99-419
               

               
Cow position:
               
chr5:46129755-46129434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
64, 39
               

               
Conread position:
               
99-420
               

               
Cow position:
               
chr5:28224360-28224676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 92
               

               
Conread position:
               
99-422
               

               
Cow position:
               
chr5:58144695-58144369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
164, 152
               

               
Conread position:
               
99-423
               

               
Cow position:
               
chr5:32975645-32975322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
113, 77
               

               
Conread position:
               
99-423
               

               
Cow position:
               
chr5:46681807-46681487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
180, 33
               

               
Conread position:
               
99-423
               

               
Cow position:
               
chr5:72903324-72903004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
29, 80
               

               
Conread position:
               
100-224
               

               
Cow position:
               
chr5:76311275-76311401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
100-231
               

               
Cow position:
               
chr5:17644748-17644616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
100-242
               

               
Cow position:
               
chr5:60448123-60448265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
100-287
               

               
Cow position:
               
chr5:16509003-16509200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
88, 164
               

               
Conread position:
               
100-328
               

               
Cow position:
               
chr5:51935099-51935325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
179, 90
               

               
Conread position:
               
100-328
               

               
Cow position:
               
chr5:62142578-62142812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
54, 34
               

               
Conread position:
               
100-331
               

               
Cow position:
               
chr5:39875031-39875263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
23, 69
               

               
Conread position:
               
100-334
               

               
Cow position:
               
chr5:14473506-14473261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
68, 165
               

               
Conread position:
               
100-339
               

               
Cow position:
               
chr5:46322903-46322656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
66, 95
               

               
Conread position:
               
100-343
               

               
Cow position:
               
chr5:35125960-35126206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
93, 79
               

               
Conread position:
               
100-343
               

               
Cow position:
               
chr5:38689636-38689388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
72, 159
               

               
Conread position:
               
100-343
               

               
Cow position:
               
chr5:43992229-43992475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 158
               

               
Conread position:
               
100-343
               

               
Cow position:
               
chr5:63427100-63426852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
88, 156
               

               
Conread position:
               
100-344
               

               
Cow position:
               
chr5:36855112-36855358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
133, 90
               

               
Conread position:
               
100-344
               

               
Cow position:
               
chr5:41293988-41294233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 114
               

               
Conread position:
               
100-344
               

               
Cow position:
               
chr5:45273593-45273350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
95, 78
               

               
Conread position:
               
100-344
               

               
Cow position:
               
chr5:54060184-54060428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
92, 69
               

               
Conread position:
               
100-356
               

               
Cow position:
               
chr5:40356959-40356695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
24, 176
               

               
Conread position:
               
100-356
               

               
Cow position:
               
chr5:56680156-56680419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
91, 75
               

               
Conread position:
               
100-410
               

               
Cow position:
               
chr5:39447623-39447301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
90, 33
               

               
Conread position:
               
100-412
               

               
Cow position:
               
chr5:59384783-59384461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
68, 90
               

               
Conread position:
               
100-413
               

               
Cow position:
               
chr5:50575692-50575995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 91
               

               
Conread position:
               
100-413
               

               
Cow position:
               
chr5:71494727-71495039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 50
               

               
Conread position:
               
100-414
               

               
Cow position:
               
chr5:57768075-57767761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
35, 89
               

               
Conread position:
               
100-415
               

               
Cow position:
               
chr5:14550674-14550353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
179, 75
               

               
Conread position:
               
100-415
               

               
Cow position:
               
chr5:33560826-33560510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
179, 79
               

               
Conread position:
               
100-415
               

               
Cow position:
               
chr5:73168094-73167785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 90
               

               
Conread position:
               
100-416
               

               
Cow position:
               
chr5:30487144-30487457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
66, 161
               

               
Conread position:
               
100-419
               

               
Cow position:
               
chr5:66972335-66972663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 155
               

               
Conread position:
               
100-420
               

               
Cow position:
               
chr5:35247202-35246873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 34
               

               
Conread position:
               
100-421
               

               
Cow position:
               
chr5:18289037-18289352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 129
               

               
Conread position:
               
100-421
               

               
Cow position:
               
chr5:36868647-36868971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
92, 36
               

               
Conread position:
               
100-421
               

               
Cow position:
               
chr5:40152385-40152721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
98, 165
               

               
Conread position:
               
100-422
               

               
Cow position:
               
chr5:19335877-19335542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
85, 159
               

               
Conread position:
               
101-236
               

               
Cow position:
               
chr5:20345074-20345205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
101-242
               

               
Cow position:
               
chr5:34115558-34115702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
101-250
               

               
Cow position:
               
chr5:35235801-35235652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
101-267
               

               
Cow position:
               
chr5:56820354-56820188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
91, 130
               

               
Conread position:
               
101-285
               

               
Cow position:
               
chr5:40039862-40039674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
94, 137
               

               
Conread position:
               
101-311
               

               
Cow position:
               
chr5:32696913-32696704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
88, 41
               

               
Conread position:
               
101-312
               

               
Cow position:
               
chr5:56635808-56636015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
22, 54
               

               
Conread position:
               
101-315
               

               
Cow position:
               
chr5:23357243-23357452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
44, 76
               

               
Conread position:
               
101-333
               

               
Cow position:
               
chr5:34463677-34463439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
22, 164
               

               
Conread position:
               
101-335
               

               
Cow position:
               
chr5:5111167-5110926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
84, 156
               

               
Conread position:
               
101-336
               

               
Cow position:
               
chr5:6045199-6045440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
91, 160
               

               
Conread position:
               
101-336
               

               
Cow position:
               
chr5:52000130-52000362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
88, 149
               

               
Conread position:
               
101-339
               

               
Cow position:
               
chr5:69731415-69731647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
86, 51
               

               
Conread position:
               
101-341
               

               
Cow position:
               
chr5:55966971-55966734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
178, 76
               

               
Conread position:
               
101-341
               

               
Cow position:
               
chr5:56317206-56317438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
178, 33
               

               
Conread position:
               
101-341
               

               
Cow position:
               
chr5:58856012-58856251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
178, 89
               

               
Conread position:
               
101-344
               

               
Cow position:
               
chr5:9090112-9089876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
178, 73
               

               
Conread position:
               
101-344
               

               
Cow position:
               
chr5:30950008-30949763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
89, 55
               

               
Conread position:
               
101-344
               

               
Cow position:
               
chr5:43929829-43929584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
87, 44
               

               
Conread position:
               
101-344
               

               
Cow position:
               
chr5:74858481-74858727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
89, 37
               

               
Conread position:
               
101-347
               

               
Cow position:
               
chr5:4710237-4709997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
178, 47
               

               
Conread position:
               
101-348
               

               
Cow position:
               
chr5:44726418-44726179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
178, 82
               

               
Conread position:
               
101-350
               

               
Cow position:
               
chr5:39258430-39258664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
178, 32
               

               
Conread position:
               
101-351
               

               
Cow position:
               
chr5:44752408-44752148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
26, 50
               

               
Conread position:
               
101-375
               

               
Cow position:
               
chr5:12709796-12710064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
95, 175
               

               
Conread position:
               
101-378
               

               
Cow position:
               
chr5:65752764-65753048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
23, 159
               

               
Conread position:
               
101-380
               

               
Cow position:
               
chr5:26990300-26990570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
81, 116
               

               
Conread position:
               
101-384
               

               
Cow position:
               
chr5:64523959-64523670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
98, 67
               

               
Conread position:
               
101-399
               

               
Cow position:
               
chr5:37645982-37646287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
81, 65
               

               
Conread position:
               
101-404
               

               
Cow position:
               
chr5:47696534-47696243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
81, 47
               

               
Conread position:
               
101-407
               

               
Cow position:
               
chr5:17063182-17062859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
87, 162
               

               
Conread position:
               
101-410
               

               
Cow position:
               
chr5:14314433-14314740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
82, 158
               

               
Conread position:
               
101-410
               

               
Cow position:
               
chr5:30253649-30253964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
95, 76
               

               
Conread position:
               
101-412
               

               
Cow position:
               
chr5:11229761-11229446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
92, 78
               

               
Conread position:
               
101-413
               

               
Cow position:
               
chr5:30302801-30303108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
85, 121
               

               
Conread position:
               
101-413
               

               
Cow position:
               
chr5:43390939-43391252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
72, 92
               

               
Conread position:
               
101-416
               

               
Cow position:
               
chr5:7044799-7044477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
84, 157
               

               
Conread position:
               
101-416
               

               
Cow position:
               
chr5:16179617-16179293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
23, 34
               

               
Conread position:
               
101-416
               

               
Cow position:
               
chr5:45845784-45845460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
87, 47
               

               
Conread position:
               
101-416
               

               
Cow position:
               
chr5:47547809-47547501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
284, 89
               

               
Conread position:
               
101-417
               

               
Cow position:
               
chr5:8024287-8023985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
86, 131
               

               
Conread position:
               
101-418
               

               
Cow position:
               
chr5:24996315-24995989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
96, 118
               

               
Conread position:
               
101-418
               

               
Cow position:
               
chr5:34976936-34976608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
41, 155
               

               
Conread position:
               
101-419
               

               
Cow position:
               
chr5:5257385-5257054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
75, 160
               

               
Conread position:
               
101-419
               

               
Cow position:
               
chr5:17999584-17999264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 82
               

               
Conread position:
               
101-419
               

               
Cow position:
               
chr5:51053740-51053416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 36
               

               
Conread position:
               
101-420
               

               
Cow position:
               
chr5:20127964-20128287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
88, 42
               

               
Conread position:
               
101-421
               

               
Cow position:
               
chr5:6528591-6528898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
77, 51
               

               
Conread position:
               
101-421
               

               
Cow position:
               
chr5:45225916-45225591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
86, 164
               

               
Conread position:
               
101-422
               

               
Cow position:
               
chr5:30232807-30233145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
29, 164
               

               
Conread position:
               
101-423
               

               
Cow position:
               
chr5:36039096-36038768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
87, 41
               

               
Conread position:
               
101-423
               

               
Cow position:
               
chr5:44446960-44446638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
85, 161
               

               
Conread position:
               
101-423
               

               
Cow position:
               
chr5:55176798-55177117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
92, 129
               

               
Conread position:
               
101-423
               

               
Cow position:
               
chr5:56070764-56071094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
88, 158
               

               
Conread position:
               
102-235
               

               
Cow position:
               
chr5:16184996-16185130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
92, 85
               

               
Conread position:
               
102-247
               

               
Cow position:
               
chr5:29212853-29212998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
89, 55
               

               
Conread position:
               
102-248
               

               
Cow position:
               
chr5:51801063-51800917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
102-265
               

               
Cow position:
               
chr5:72287004-72286844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
42, 88
               

               
Conread position:
               
102-272
               

               
Cow position:
               
chr5:32140799-32140630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
93, 38
               

               
Conread position:
               
102-330
               

               
Cow position:
               
chr5:34441883-34441642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
25, 166
               

               
Conread position:
               
102-331
               

               
Cow position:
               
chr5:29844187-29844419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
21, 179
               

               
Conread position:
               
102-331
               

               
Cow position:
               
chr5:60747370-60747142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
21, 150
               

               
Conread position:
               
102-339
               

               
Cow position:
               
chr5:54768000-54767762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
91, 118
               

               
Conread position:
               
102-340
               

               
Cow position:
               
chr5:28230063-28230311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
67, 94
               

               
Conread position:
               
102-344
               

               
Cow position:
               
chr5:12866911-12866676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
21, 156
               

               
Conread position:
               
102-344
               

               
Cow position:
               
chr5:60715450-60715216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
21, 54
               

               
Conread position:
               
102-344
               

               
Cow position:
               
chr5:64758863-64758615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
21, 159
               

               
Conread position:
               
102-348
               

               
Cow position:
               
chr5:58446711-58446964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
22, 159
               

               
Conread position:
               
102-374
               

               
Cow position:
               
chr5:6683447-6683193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
26, 80
               

               
Conread position:
               
102-401
               

               
Cow position:
               
chr5:57327706-57328011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
109, 77
               

               
Conread position:
               
102-402
               

               
Cow position:
               
chr5:65776473-65776162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
177, 75
               

               
Conread position:
               
102-408
               

               
Cow position:
               
chr5:55756516-55756192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 161
               

               
Conread position:
               
102-414
               

               
Cow position:
               
chr5:47317062-47316747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 80
               

               
Conread position:
               
102-414
               

               
Cow position:
               
chr5:53835622-53835949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
89, 158
               

               
Conread position:
               
102-416
               

               
Cow position:
               
chr5:29827958-29828278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
131, 82
               

               
Conread position:
               
102-418
               

               
Cow position:
               
chr5:55955816-55956142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 148
               

               
Conread position:
               
102-419
               

               
Cow position:
               
chr5:72006946-72006649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
21, 88
               

               
Conread position:
               
102-422
               

               
Cow position:
               
chr5:18898887-18899191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 46
               

               
Conread position:
               
102-422
               

               
Cow position:
               
chr5:30805077-30805385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 66
               

               
Conread position:
               
102-423
               

               
Cow position:
               
chr5:43858524-43858181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 52
               

               
Conread position:
               
102-423
               

               
Cow position:
               
chr5:53855607-53855955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
50, 55
               

               
Conread position:
               
103-256
               

               
Cow position:
               
chr5:48405270-48405113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
20, 140
               

               
Conread position:
               
103-287
               

               
Cow position:
               
chr5:73080110-73080299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
103-308
               

               
Cow position:
               
chr5:55928850-55929060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
20, 157
               

               
Conread position:
               
103-310
               

               
Cow position:
               
chr5:52645170-52644962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
20, 88
               

               
Conread position:
               
103-323
               

               
Cow position:
               
chr5:32956187-32955964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
21, 152
               

               
Conread position:
               
103-335
               

               
Cow position:
               
chr5:1396523-1396742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
176, 51
               

               
Conread position:
               
103-336
               

               
Cow position:
               
chr5:38076575-38076339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
83, 26
               

               
Conread position:
               
103-343
               

               
Cow position:
               
chr5:36255352-36255106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
23, 158
               

               
Conread position:
               
103-344
               

               
Cow position:
               
chr5:26477102-26476866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
93, 60
               

               
Conread position:
               
103-345
               

               
Cow position:
               
chr5:29771426-29771681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
20, 36
               

               
Conread position:
               
103-347
               

               
Cow position:
               
chr5:59873181-59872925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
84, 164
               

               
Conread position:
               
103-380
               

               
Cow position:
               
chr5:6503972-6503686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
23, 35
               

               
Conread position:
               
103-384
               

               
Cow position:
               
chr5:48829066-48829349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
25, 76
               

               
Conread position:
               
103-397
               

               
Cow position:
               
chr5:26377759-26377470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
85, 63
               

               
Conread position:
               
103-404
               

               
Cow position:
               
chr5:67932555-67932249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
20, 57
               

               
Conread position:
               
103-412
               

               
Cow position:
               
chr5:16893863-16893553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
84, 96
               

               
Conread position:
               
103-415
               

               
Cow position:
               
chr5:44028834-44028524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
24, 66
               

               
Conread position:
               
103-416
               

               
Cow position:
               
chr5:18574084-18574411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 30
               

               
Conread position:
               
103-420
               

               
Cow position:
               
chr5:34506018-34505690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
23, 52
               

               
Conread position:
               
103-420
               

               
Cow position:
               
chr5:35459386-35459063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 158
               

               
Conread position:
               
103-420
               

               
Cow position:
               
chr5:42064113-42064440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 158
               

               
Conread position:
               
103-420
               

               
Cow position:
               
chr5:64555438-64555764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
23, 75
               

               
Conread position:
               
103-421
               

               
Cow position:
               
chr5:40889376-40889061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
23, 71
               

               
Conread position:
               
103-421
               

               
Cow position:
               
chr5:45409231-45409559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
23, 75
               

               
Conread position:
               
103-421
               

               
Cow position:
               
chr5:52126683-52127006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
22, 32
               

               
Conread position:
               
103-421
               

               
Cow position:
               
chr5:53055652-53055325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
68, 36
               

               
Conread position:
               
104-306
               

               
Cow position:
               
chr5:35209567-35209363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
23, 155
               

               
Conread position:
               
104-404
               

               
Cow position:
               
chr5:16214594-16214898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
19, 163
               

               
Conread position:
               
104-408
               

               
Cow position:
               
chr5:35229219-35228923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
175, 72
               

               
Conread position:
               
104-413
               

               
Cow position:
               
chr5:5855774-5856087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 30
               

               
Conread position:
               
104-418
               

               
Cow position:
               
chr5:26262763-26262453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 44
               

               
Conread position:
               
104-421
               

               
Cow position:
               
chr5:35208174-35208497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 156
               

               
Conread position:
               
104-422
               

               
Cow position:
               
chr5:3771759-3772077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 123
               

               
Conread position:
               
105-331
               

               
Cow position:
               
chr5:23529369-23529144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
18, 123
               

               
Conread position:
               
106-260
               

               
Cow position:
               
chr5:29980075-29979916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
17, 150
               

               
Conread position:
               
106-334
               

               
Cow position:
               
chr5:57737018-57737241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
19, 28
               

               
Conread position:
               
106-344
               

               
Cow position:
               
chr5:23168917-23168674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
20, 154
               

               
Conread position:
               
106-356
               

               
Cow position:
               
chr5:27411483-27411233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
171, 28
               

               
Conread position:
               
106-417
               

               
Cow position:
               
chr5:41713210-41713519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
21, 33
               

               
Conread position:
               
106-421
               

               
Cow position:
               
chr5:55068619-55068935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
20, 29
               

               
Conread position:
               
107-331
               

               
Cow position:
               
chr5:27419813-27419590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
80, 22
               

               
Conread position:
               
107-339
               

               
Cow position:
               
chr5:17028005-17028242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
16, 151
               

               
Conread position:
               
108-312
               

               
Cow position:
               
chr5:65588618-65588819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
18, 28
               

               
Conread position:
               
108-401
               

               
Cow position:
               
chr5:34109143-34108843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
78, 26
               

               
Conread position:
               
108-420
               

               
Cow position:
               
chr5:57265991-57265665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
35, 20
               

               
Conread position:
               
108-422
               

               
Cow position:
               
chr5:16938106-16937798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
23, 39
               

               
Conread position:
               
109-336
               

               
Cow position:
               
chr5:50533471-50533244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
76, 158
               

               
Conread position:
               
110-416
               

               
Cow position:
               
chr5:62870125-62869834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
78, 38
               

               
Conread position:
               
111-413
               

               
Cow position:
               
chr5:34624880-34625175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
78, 22
               

               
Conread position:
               
111-423
               

               
Cow position:
               
chr5:61914488-61914808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
132, 66
               

               
Conread position:
               
112-421
               

               
Cow position:
               
chr5:37255423-37255099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
19, 71
               

               
Conread position:
               
112-423
               

               
Cow position:
               
chr5:42845678-42845361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 151
               

               
Conread position:
               
112-423
               

               
Cow position:
               
chr5:57101606-57101290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 32
               

               
Conread position:
               
113-236
               

               
Cow position:
               
chr5:71579095-71579219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
113-277
               

               
Cow position:
               
chr5:46122430-46122270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
113-308
               

               
Cow position:
               
chr5:31481067-31481264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
76, 25
               

               
Conread position:
               
113-315
               

               
Cow position:
               
chr5:67540283-67540078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
61, 149
               

               
Conread position:
               
113-319
               

               
Cow position:
               
chr5:42744708-42744907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
74, 45
               

               
Conread position:
               
113-322
               

               
Cow position:
               
chr5:28927669-28927464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
71, 124
               

               
Conread position:
               
113-335
               

               
Cow position:
               
chr5:12556248-12556461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
177, 47
               

               
Conread position:
               
113-347
               

               
Cow position:
               
chr5:34300836-34301071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
74, 139
               

               
Conread position:
               
113-404
               

               
Cow position:
               
chr5:20779478-20779182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
20, 65
               

               
Conread position:
               
113-404
               

               
Cow position:
               
chr5:50599976-50600263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
163, 46
               

               
Conread position:
               
113-404
               

               
Cow position:
               
chr5:74643751-74643467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
166, 71
               

               
Conread position:
               
113-407
               

               
Cow position:
               
chr5:41884856-41885135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
42, 77
               

               
Conread position:
               
113-412
               

               
Cow position:
               
chr5:43402820-43403135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
73, 151
               

               
Conread position:
               
113-413
               

               
Cow position:
               
chr5:28302827-28302530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
65, 45
               

               
Conread position:
               
113-414
               

               
Cow position:
               
chr5:66581885-66582197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
157, 66
               

               
Conread position:
               
113-415
               

               
Cow position:
               
chr5:52165258-52164944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 144
               

               
Conread position:
               
113-421
               

               
Cow position:
               
chr5:46512843-46512533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
176, 71
               

               
Conread position:
               
113-421
               

               
Cow position:
               
chr5:69461254-69461567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
17, 23
               

               
Conread position:
               
113-422
               

               
Cow position:
               
chr5:12873663-12873988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
55, 151
               

               
Conread position:
               
113-423
               

               
Cow position:
               
chr5:21828786-21829101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 148
               

               
Conread position:
               
113-423
               

               
Cow position:
               
chr5:22242854-22242537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
70, 35
               

               
Conread position:
               
113-423
               

               
Cow position:
               
chr5:57935189-57934883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
78, 144
               

               
Conread position:
               
113-423
               

               
Cow position:
               
chr5:65140207-65140536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
45, 38
               

               
Conread position:
               
114-245
               

               
Cow position:
               
chr5:24485516-24485382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
114-331
               

               
Cow position:
               
chr5:37757906-37757700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
9, 68
               

               
Conread position:
               
114-376
               

               
Cow position:
               
chr5:35826523-35826783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
9, 62
               

               
Conread position:
               
114-414
               

               
Cow position:
               
chr5:1247185-1247490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
73, 20
               

               
Conread position:
               
114-416
               

               
Cow position:
               
chr5:41935734-41935426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 10
               

               
Conread position:
               
114-419
               

               
Cow position:
               
chr5:4280369-4280677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 69
               

               
Conread position:
               
114-423
               

               
Cow position:
               
chr5:39937027-39937352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
72, 128
               

               
Conread position:
               
116-421
               

               
Cow position:
               
chr5:26133166-26132861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
11, 85
               

               
Conread position:
               
118-285
               

               
Cow position:
               
chr5:37893258-37893426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
65, 139
               

               
Conread position:
               
118-344
               

               
Cow position:
               
chr5:1165099-1165317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
161, 94
               

               
Conread position:
               
118-344
               

               
Cow position:
               
chr5:37190170-37189945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
161, 61
               

               
Conread position:
               
118-348
               

               
Cow position:
               
chr5:16206230-16205999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
61, 114
               

               
Conread position:
               
118-371
               

               
Cow position:
               
chr5:60183726-60183981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
71, 142
               

               
Conread position:
               
118-408
               

               
Cow position:
               
chr5:11540122-11539831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
161, 61
               

               
Conread position:
               
118-412
               

               
Cow position:
               
chr5:36650475-36650781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
118-412
               

               
Cow position:
               
chr5:56028602-56028319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
161, 32
               

               
Conread position:
               
118-415
               

               
Cow position:
               
chr5:41165011-41165310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 140
               

               
Conread position:
               
118-422
               

               
Cow position:
               
chr5:19752230-19752537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 39
               

               
Conread position:
               
118-423
               

               
Cow position:
               
chr5:57756106-57755798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 110
               

               
Conread position:
               
120-421
               

               
Cow position:
               
chr5:73167200-73166905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
74, 57
               

               
Conread position:
               
121-339
               

               
Cow position:
               
chr5:4220912-4221124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
90, 68
               

               
Conread position:
               
121-365
               

               
Cow position:
               
chr5:57787734-57787983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
149, 74
               

               
Conread position:
               
121-380
               

               
Cow position:
               
chr5:61492025-61492288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
158, 69
               

               
Conread position:
               
121-384
               

               
Cow position:
               
chr5:57419863-57419602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
158, 48
               

               
Conread position:
               
121-401
               

               
Cow position:
               
chr5:63234898-63234609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
69, 114
               

               
Conread position:
               
121-414
               

               
Cow position:
               
chr5:25366019-25366326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
67, 151
               

               
Conread position:
               
121-416
               

               
Cow position:
               
chr5:38833051-38833344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
78, 27
               

               
Conread position:
               
121-422
               

               
Cow position:
               
chr5:12557364-12557051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
64, 105
               

               
Conread position:
               
121-423
               

               
Cow position:
               
chr5:44796803-44796499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 47
               

               
Conread position:
               
121-423
               

               
Cow position:
               
chr5:50713843-50713513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
122-250
               

               
Cow position:
               
chr5:30293643-30293512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
122-396
               

               
Cow position:
               
chr5:24349037-24349299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
157, 68
               

               
Conread position:
               
122-414
               

               
Cow position:
               
chr5:61771043-61771349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
60, 69
               

               
Conread position:
               
122-422
               

               
Cow position:
               
chr5:28035671-28035959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
68, 11
               

               
Conread position:
               
122-423
               

               
Cow position:
               
chr5:6439104-6438789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
51, 147
               

               
Conread position:
               
123-344
               

               
Cow position:
               
chr5:67212286-67212512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
58, 136
               

               
Conread position:
               
123-353
               

               
Cow position:
               
chr5:41981300-41981529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
65, 134
               

               
Conread position:
               
123-384
               

               
Cow position:
               
chr5:12247817-12247547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
18, 141
               

               
Conread position:
               
123-413
               

               
Cow position:
               
chr5:31475614-31475910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
156, 67
               

               
Conread position:
               
124-415
               

               
Cow position:
               
chr5:47601750-47602037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
155, 55
               

               
Conread position:
               
124-423
               

               
Cow position:
               
chr5:50857867-50858172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
154, 66
               

               
Conread position:
               
125-379
               

               
Cow position:
               
chr5:11769200-11769461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
23, 66
               

               
Conread position:
               
125-401
               

               
Cow position:
               
chr5:57994933-57994666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
154, 8
               

               
Conread position:
               
125-413
               

               
Cow position:
               
chr5:49474617-49474328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
30, 138
               

               
Conread position:
               
126-412
               

               
Cow position:
               
chr5:57074400-57074111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
66, 29
               

               
Conread position:
               
126-414
               

               
Cow position:
               
chr5:30629225-30628926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
151, 30
               

               
Conread position:
               
126-418
               

               
Cow position:
               
chr5:59627040-59626740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
60, 8
               

               
Conread position:
               
127-410
               

               
Cow position:
               
chr5:40109425-40109708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
67, 97
               

               
Conread position:
               
127-418
               

               
Cow position:
               
chr5:53842217-53842523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
96, 57
               

               
Conread position:
               
127-422
               

               
Cow position:
               
chr5:25035309-25035018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
152, 52
               

               
Conread position:
               
128-347
               

               
Cow position:
               
chr5:66551963-66551741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
69, 6
               

               
Conread position:
               
128-423
               

               
Cow position:
               
chr5:60016103-60016400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
67, 6
               

               
Conread position:
               
129-267
               

               
Cow position:
               
chr5:34107173-34107308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
129-312
               

               
Cow position:
               
chr5:58793672-58793487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
61, 5
               

               
Conread position:
               
129-323
               

               
Cow position:
               
chr5:1461024-1461220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
57, 5
               

               
Conread position:
               
129-410
               

               
Cow position:
               
chr5:30276634-30276911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
150, 5
               

               
Conread position:
               
129-412
               

               
Cow position:
               
chr5:7012911-7012624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
67, 5
               

               
Conread position:
               
129-423
               

               
Cow position:
               
chr5:43604080-43604375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
150, 5
               

               
Conread position:
               
133-419
               

               
Cow position:
               
chr5:33032113-33032400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
159, 57
               

               
Conread position:
               
135-419
               

               
Cow position:
               
chr5:3582510-3582788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
144, 13
               

               
Conread position:
               
138-285
               

               
Cow position:
               
chr5:33654601-33654453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
58, 119
               

               
Conread position:
               
138-331
               

               
Cow position:
               
chr5:27102849-27102655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
56, 29
               

               
Conread position:
               
138-331
               

               
Cow position:
               
chr5:35785036-35784850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
141, 10
               

               
Conread position:
               
138-333
               

               
Cow position:
               
chr5:45420189-45419996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
141, 48
               

               
Conread position:
               
138-338
               

               
Cow position:
               
chr5:34528500-34528692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
141, 30
               

               
Conread position:
               
138-340
               

               
Cow position:
               
chr5:29515551-29515358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
35, 57
               

               
Conread position:
               
138-340
               

               
Cow position:
               
chr5:56524114-56524322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
40, 123
               

               
Conread position:
               
138-381
               

               
Cow position:
               
chr5:60952600-60952853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
43, 105
               

               
Conread position:
               
138-381
               

               
Cow position:
               
chr5:66366452-66366700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
43, 121
               

               
Conread position:
               
138-384
               

               
Cow position:
               
chr5:59330803-59330545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
39, 126
               

               
Conread position:
               
138-401
               

               
Cow position:
               
chr5:22643280-22643033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
34, 53
               

               
Conread position:
               
138-401
               

               
Cow position:
               
chr5:45397517-45397779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
51, 41
               

               
Conread position:
               
138-413
               

               
Cow position:
               
chr5:63627580-63627313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
151, 31
               

               
Conread position:
               
138-415
               

               
Cow position:
               
chr5:20995150-20994861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
48, 127
               

               
Conread position:
               
138-416
               

               
Cow position:
               
chr5:19278755-19278474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
95, 35
               

               
Conread position:
               
138-418
               

               
Cow position:
               
chr5:34561957-34562241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
31, 126
               

               
Conread position:
               
138-419
               

               
Cow position:
               
chr5:61455790-61456080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
49, 120
               

               
Conread position:
               
138-420
               

               
Cow position:
               
chr5:43923213-43922937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
50, 123
               

               
Conread position:
               
138-423
               

               
Cow position:
               
chr5:59082250-59081955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
51, 41
               

               
Conread position:
               
139-351
               

               
Cow position:
               
chr5:34887254-34887038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
19, 117
               

               
Conread position:
               
139-423
               

               
Cow position:
               
chr5:14345149-14344860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
140, 38
               

               
Conread position:
               
140-248
               

               
Cow position:
               
chr5:3004672-3004778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
140-313
               

               
Cow position:
               
chr5:9390492-9390678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
48, 124
               

               
Conread position:
               
140-318
               

               
Cow position:
               
chr5:19813276-19813094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
41, 27
               

               
Conread position:
               
140-343
               

               
Cow position:
               
chr5:57156367-57156163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
90, 51
               

               
Conread position:
               
140-361
               

               
Cow position:
               
chr5:37646599-37646377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
49, 119
               

               
Conread position:
               
140-399
               

               
Cow position:
               
chr5:29353187-29352920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
47, 125
               

               
Conread position:
               
140-420
               

               
Cow position:
               
chr5:19796919-19797220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
42, 119
               

               
Conread position:
               
140-420
               

               
Cow position:
               
chr5:63240923-63241212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
48, 117
               

               
Conread position:
               
140-421
               

               
Cow position:
               
chr5:58987-58696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
57, 120
               

               
Conread position:
               
140-421
               

               
Cow position:
               
chr5:63831874-63832150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
51, 64
               

               
Conread position:
               
141-421
               

               
Cow position:
               
chr5:57393354-57393069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
15, 38
               

               
Conread position:
               
142-421
               

               
Cow position:
               
chr5:30418923-30419208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
49, 36
               

               
Conread position:
               
143-413
               

               
Cow position:
               
chr5:15470882-15471144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
46, 78
               

               
Conread position:
               
145-414
               

               
Cow position:
               
chr5:45404993-45405274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
81, 47
               

               
Conread position:
               
146-342
               

               
Cow position:
               
chr5:58555093-58555287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
45, 22
               

               
Conread position:
               
146-345
               

               
Cow position:
               
chr5:27188078-27188268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
63, 72
               

               
Conread position:
               
147-295
               

               
Cow position:
               
chr5:31918599-31918745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
132, 43
               

               
Conread position:
               
147-342
               

               
Cow position:
               
chr5:36838908-36839109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
14, 115
               

               
Conread position:
               
147-405
               

               
Cow position:
               
chr5:61784774-61784507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
51, 110
               

               
Conread position:
               
148-382
               

               
Cow position:
               
chr5:49501870-49501626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
46, 109
               

               
Conread position:
               
148-421
               

               
Cow position:
               
chr5:52001666-52001390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
61, 38
               

               
Conread position:
               
148-421
               

               
Cow position:
               
chr5:56153569-56153833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
49, 101
               

               
Conread position:
               
150-384
               

               
Cow position:
               
chr5:55796008-55795776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 26
               

               
Conread position:
               
150-401
               

               
Cow position:
               
chr5:38717275-38717509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
129, 14
               

               
Conread position:
               
151-331
               

               
Cow position:
               
chr5:2851546-2851729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
67, 44
               

               
Conread position:
               
151-413
               

               
Cow position:
               
chr5:40237171-40237415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
37, 62
               

               
Conread position:
               
151-415
               

               
Cow position:
               
chr5:59627059-59627320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
18, 46
               

               
Conread position:
               
151-421
               

               
Cow position:
               
chr5:50101420-50101144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 199
               

               
Conread position:
               
151-423
               

               
Cow position:
               
chr5:69337781-69338051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
45, 28
               

               
Conread position:
               
152-419
               

               
Cow position:
               
chr5:54875740-54875461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
45, 8
               

               
Conread position:
               
154-327
               

               
Cow position:
               
chr5:27306264-27306439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
11, 26
               

               
Conread position:
               
154-365
               

               
Cow position:
               
chr5:17602240-17602030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
35, 25
               

               
Conread position:
               
156-411
               

               
Cow position:
               
chr5:30247557-30247300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
123, 23
               

               
Conread position:
               
157-418
               

               
Cow position:
               
chr5:57686777-57686512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
30, 106
               

               
Conread position:
               
158-414
               

               
Cow position:
               
chr5:65883663-65883397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
37, 103
               

               
Conread position:
               
158-421
               

               
Cow position:
               
chr5:270138-269864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
6, 104
               

               
Conread position:
               
159-423
               

               
Cow position:
               
chr5:60210178-60209910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
30, 20
               

               
Conread position:
               
160-343
               

               
Cow position:
               
chr5:3588993-3589178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
29, 62
               

               
Conread position:
               
160-422
               

               
Cow position:
               
chr5:33273657-33273933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
32, 98
               

               
Conread position:
               
160-423
               

               
Cow position:
               
chr5:26549175-26548906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
27, 62
               

               
Conread position:
               
162-322
               

               
Cow position:
               
chr5:45574399-45574235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
11, 104
               

               
Conread position:
               
162-343
               

               
Cow position:
               
chr5:38739430-38739252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
48, 27
               

               
Conread position:
               
162-403
               

               
Cow position:
               
chr5:61007034-61007280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
117, 92
               

               
Conread position:
               
162-415
               

               
Cow position:
               
chr5:55783978-55783733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
117, 17
               

               
Conread position:
               
164-422
               

               
Cow position:
               
chr5:52108296-52108023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
113, 30
               

               
Conread position:
               
168-344
               

               
Cow position:
               
chr5:57230365-57230185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
26, 90
               

               
Conread position:
               
168-423
               

               
Cow position:
               
chr5:46672180-46672450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
111, 91
               

               
Conread position:
               
169-401
               

               
Cow position:
               
chr5:54753276-54753035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
169-422
               

               
Cow position:
               
chr5:30561909-30562163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
110, 22
               

               
Conread position:
               
170-344
               

               
Cow position:
               
chr5:9369290-9369119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
109, 20
               

               
Conread position:
               
171-413
               

               
Cow position:
               
chr5:34347750-34347507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
108, 65
               

               
Conread position:
               
172-383
               

               
Cow position:
               
chr5:16939613-16939399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
107, 18
               

               
Conread position:
               
172-384
               

               
Cow position:
               
chr5:25597815-25598023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
107, 37
               

               
Conread position:
               
174-384
               

               
Cow position:
               
chr5:60741224-60741439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
21, 44
               

               
Conread position:
               
175-348
               

               
Cow position:
               
chr5:24946223-24946396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
104, 19
               

               
Conread position:
               
176-420
               

               
Cow position:
               
chr5:50871793-50872046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
19, 219
               

               
Conread position:
               
176-421
               

               
Cow position:
               
chr5:2827358-2827609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
103, 15
               

               
Conread position:
               
176-421
               

               
Cow position:
               
chr5:5760332-5760075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
17, 85
               

               
Conread position:
               
176-423
               

               
Cow position:
               
chr5:29829912-29829651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
50, 88
               

               
Conread position:
               
177-342
               

               
Cow position:
               
chr5:56287519-56287352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
32, 80
               

               
Conread position:
               
178-418
               

               
Cow position:
               
chr5:67679162-67679412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
17, 80
               

               
Conread position:
               
178-423
               

               
Cow position:
               
chr5:52137920-52138174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
59, 78
               

               
Conread position:
               
179-402
               

               
Cow position:
               
chr5:48867478-48867255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
100, 77
               

               
Conread position:
               
179-421
               

               
Cow position:
               
chr5:29681084-29681328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
100, 75
               

               
Conread position:
               
180-412
               

               
Cow position:
               
chr5:17104839-17105071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
11, 79
               

               
Conread position:
               
182-420
               

               
Cow position:
               
chr5:69383243-69383485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
13, 83
               

               
Conread position:
               
184-383
               

               
Cow position:
               
chr5:35513204-35513414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
11, 76
               

               
Conread position:
               
184-415
               

               
Cow position:
               
chr5:50943164-50942932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
96, 25
               

               
Conread position:
               
185-419
               

               
Cow position:
               
chr5:39035771-39036015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
6, 75
               

               
Conread position:
               
186-385
               

               
Cow position:
               
chr5:17384157-17383959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
20, 79
               

               
Conread position:
               
186-404
               

               
Cow position:
               
chr5:4267663-4267877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
93, 70
               

               
Conread position:
               
186-421
               

               
Cow position:
               
chr5:4226340-4226589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
89, 70
               

               
Conread position:
               
188-416
               

               
Cow position:
               
chr5:6520006-6520236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
69, 119
               

               
Conread position:
               
190-384
               

               
Cow position:
               
chr5:54750812-54751002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
89, 42
               

               
Conread position:
               
190-422
               

               
Cow position:
               
chr5:34915056-34914819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
89, 68
               

               
Conread position:
               
190-423
               

               
Cow position:
               
chr5:35989754-35989998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
21, 74
               

               
Conread position:
               
191-343
               

               
Cow position:
               
chr5:56428313-56428165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
98, 64
               

               
Conread position:
               
191-344
               

               
Cow position:
               
chr5:27293886-27293732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
88, 63
               

               
Conread position:
               
191-344
               

               
Cow position:
               
chr5:55129341-55129495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
88, 68
               

               
Conread position:
               
191-413
               

               
Cow position:
               
chr5:67634519-67634281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
88, 65
               

               
Conread position:
               
191-416
               

               
Cow position:
               
chr5:2469209-2468984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
88, 68
               

               
Conread position:
               
191-418
               

               
Cow position:
               
chr5:58519418-58519185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
88, 68
               

               
Conread position:
               
191-419
               

               
Cow position:
               
chr5:55965896-55965660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
88, 67
               

               
Conread position:
               
191-419
               

               
Cow position:
               
chr5:65679972-65679741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
88, 61
               

               
Conread position:
               
191-422
               

               
Cow position:
               
chr5:60515030-60514789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
98, 63
               

               
Conread position:
               
191-423
               

               
Cow position:
               
chr5:57062531-57062292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
88, 59
               

               
Conread position:
               
192-348
               

               
Cow position:
               
chr5:60908665-60908820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
87, 42
               

               
Conread position:
               
192-407
               

               
Cow position:
               
chr5:18062320-18062089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
87, 67
               

               
Conread position:
               
192-416
               

               
Cow position:
               
chr5:65552709-65552491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
193, 16
               

               
Conread position:
               
192-419
               

               
Cow position:
               
chr5:52852970-52853199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
87, 62
               

               
Conread position:
               
192-421
               

               
Cow position:
               
chr5:56613565-56613328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
87, 64
               

               
Conread position:
               
193-402
               

               
Cow position:
               
chr5:44163369-44163158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
50, 64
               

               
Conread position:
               
193-404
               

               
Cow position:
               
chr5:72045674-72045460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
86, 59
               

               
Conread position:
               
193-414
               

               
Cow position:
               
chr5:56860447-56860671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
86, 61
               

               
Conread position:
               
193-420
               

               
Cow position:
               
chr5:61049332-61049567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
86, 63
               

               
Conread position:
               
193-421
               

               
Cow position:
               
chr5:17566438-17566208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
86, 41
               

               
Conread position:
               
194-408
               

               
Cow position:
               
chr5:48918811-48919019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
97, 12
               

               
Conread position:
               
194-412
               

               
Cow position:
               
chr5:44810238-44810012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
85, 64
               

               
Conread position:
               
194-421
               

               
Cow position:
               
chr5:58737757-58737522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
85, 62
               

               
Conread position:
               
194-421
               

               
Cow position:
               
chr5:60422969-60422736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
85, 65
               

               
Conread position:
               
195-417
               

               
Cow position:
               
chr5:40102724-40102517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
210, 63
               

               
Conread position:
               
195-423
               

               
Cow position:
               
chr5:11562721-11562492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
48, 60
               

               
Conread position:
               
195-423
               

               
Cow position:
               
chr5:12299913-12300147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
84, 64
               

               
Conread position:
               
196-401
               

               
Cow position:
               
chr5:51920291-51920504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
83, 63
               

               
Conread position:
               
196-419
               

               
Cow position:
               
chr5:5016432-5016656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
84, 53
               

               
Conread position:
               
197-344
               

               
Cow position:
               
chr5:51490241-51490095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
82, 36
               

               
Conread position:
               
197-400
               

               
Cow position:
               
chr5:3743326-3743539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
82, 59
               

               
Conread position:
               
197-403
               

               
Cow position:
               
chr5:22608647-22608855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
82, 27
               

               
Conread position:
               
199-421
               

               
Cow position:
               
chr5:52137048-52136818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
82, 60
               

               
Conread position:
               
200-345
               

               
Cow position:
               
chr5:26723455-26723601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
79, 56
               

               
Conread position:
               
200-404
               

               
Cow position:
               
chr5:60948140-60948349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
79, 59
               

               
Conread position:
               
200-413
               

               
Cow position:
               
chr5:17828472-17828250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
79, 54
               

               
Conread position:
               
201-421
               

               
Cow position:
               
chr5:26497669-26497454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
78, 58
               

               
Conread position:
               
202-419
               

               
Cow position:
               
chr5:65050202-65049991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
25, 59
               

               
Conread position:
               
202-423
               

               
Cow position:
               
chr5:44196920-44196692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
77, 57
               

               
Conread position:
               
206-421
               

               
Cow position:
               
chr5:28681504-28681282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
73, 53
               

               
Conread position:
               
208-419
               

               
Cow position:
               
chr5:47743643-47743853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
81, 51
               

               
Conread position:
               
208-420
               

               
Cow position:
               
chr5:7177166-7177385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
71, 51
               

               
Conread position:
               
214-384
               

               
Cow position:
               
chr5:38040543-38040374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
65, 45
               

               
Conread position:
               
214-403
               

               
Cow position:
               
chr5:51233998-51233808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
65, 50
               

               
Conread position:
               
214-420
               

               
Cow position:
               
chr5:46063518-46063727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
65, 45
               

               
Conread position:
               
216-421
               

               
Cow position:
               
chr5:57497404-57497191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
49, 22
               

               
Conread position:
               
217-401
               

               
Cow position:
               
chr5:53980730-53980538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
62, 42
               

               
Conread position:
               
218-423
               

               
Cow position:
               
chr5:16185403-16185617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
66, 40
               

               
Conread position:
               
219-397
               

               
Cow position:
               
chr5:20882598-20882404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
60, 40
               

               
Conread position:
               
219-402
               

               
Cow position:
               
chr5:36822913-36823084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
60, 36
               

               
Conread position:
               
219-418
               

               
Cow position:
               
chr5:31648446-31648646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
19, 9
               

               
Conread position:
               
219-420
               

               
Cow position:
               
chr5:6876942-6876731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
60, 39
               

               
Conread position:
               
219-420
               

               
Cow position:
               
chr5:43839976-43839764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
17, 52
               

               
Conread position:
               
219-421
               

               
Cow position:
               
chr5:24464770-24464972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
19, 48
               

               
Conread position:
               
220-344
               

               
Cow position:
               
chr5:38382772-38382648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
59, 34
               

               
Conread position:
               
220-380
               

               
Cow position:
               
chr5:30035094-30035259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
59, 38
               

               
Conread position:
               
220-399
               

               
Cow position:
               
chr5:20812573-20812761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
59, 36
               

               
Conread position:
               
220-404
               

               
Cow position:
               
chr5:44734698-44734510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
59, 44
               

               
Conread position:
               
220-421
               

               
Cow position:
               
chr5:13270990-13270781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
59, 35
               

               
Conread position:
               
221-344
               

               
Cow position:
               
chr5:51490574-51490450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
58, 43
               

               
Conread position:
               
221-410
               

               
Cow position:
               
chr5:16668725-16668916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
58, 43
               

               
Conread position:
               
221-413
               

               
Cow position:
               
chr5:57399224-57399025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
58, 29
               

               
Conread position:
               
222-413
               

               
Cow position:
               
chr5:19079281-19079470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
57, 37
               

               
Conread position:
               
223-423
               

               
Cow position:
               
chr5:64843941-64843729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
56, 41
               

               
Conread position:
               
224-418
               

               
Cow position:
               
chr5:14167869-14168078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
37, 71
               

               
Conread position:
               
226-400
               

               
Cow position:
               
chr5:53795058-53795234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
46, 33
               

               
Conread position:
               
226-408
               

               
Cow position:
               
chr5:62572565-62572752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
53, 33
               

               
Conread position:
               
226-413
               

               
Cow position:
               
chr5:742764-742954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
53, 15
               

               
Conread position:
               
226-421
               

               
Cow position:
               
chr5:62011716-62011916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
53, 33
               

               
Conread position:
               
226-422
               

               
Cow position:
               
chr5:26894686-26894477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
53, 33
               

               
Conread position:
               
227-413
               

               
Cow position:
               
chr5:35190144-35190333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
52, 32
               

               
Conread position:
               
227-415
               

               
Cow position:
               
chr5:69765993-69765805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
52, 25
               

               
Conread position:
               
228-414
               

               
Cow position:
               
chr5:12562725-12562533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
38, 86
               

               
Conread position:
               
228-419
               

               
Cow position:
               
chr5:49821463-49821664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
51, 31
               

               
Conread position:
               
228-421
               

               
Cow position:
               
chr5:7676120-7675924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
51, 31
               

               
Conread position:
               
228-421
               

               
Cow position:
               
chr5:20126938-20127142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
36, 107
               

               
Conread position:
               
228-423
               

               
Cow position:
               
chr5:40122575-40122372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
51, 30
               

               
Conread position:
               
234-422
               

               
Cow position:
               
chr5:5808137-5808332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
57, 24
               

               
Conread position:
               
234-422
               

               
Cow position:
               
chr5:24915486-24915290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
45, 25
               

               
Conread position:
               
234-423
               

               
Cow position:
               
chr5:2355561-2355755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
43, 24
               

               
Conread position:
               
234-423
               

               
Cow position:
               
chr5:30221737-30221541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
45, 24
               

               
Conread position:
               
235-344
               

               
Cow position:
               
chr5:36251154-36251264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
50, 29
               

               
Conread position:
               
235-418
               

               
Cow position:
               
chr5:40531496-40531300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
44, 20
               

               
Conread position:
               
235-420
               

               
Cow position:
               
chr5:34918388-34918576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
44, 24
               

               
Conread position:
               
237-418
               

               
Cow position:
               
chr5:54404810-54404630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
42, 21
               

               
Conread position:
               
239-413
               

               
Cow position:
               
chr5:59335816-59335999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
40, 19
               

               
Conread position:
               
239-414
               

               
Cow position:
               
chr5:56327675-56327499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
34, 19
               

               
Conread position:
               
239-416
               

               
Cow position:
               
chr5:45854537-45854730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
34, 19
               

               
Conread position:
               
239-416
               

               
Cow position:
               
chr5:66294045-66294227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
40, 127
               

               
Conread position:
               
239-419
               

               
Cow position:
               
chr5:15077589-15077402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
19, 10
               

               
Conread position:
               
239-421
               

               
Cow position:
               
chr5:48062071-48061874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
40, 20
               

               
Conread position:
               
239-421
               

               
Cow position:
               
chr5:51012045-51012234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
40, 27
               

               
Conread position:
               
239-423
               

               
Cow position:
               
chr5:54340811-54341002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
240-372
               

               
Cow position:
               
chr5:29979911-29979782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
39, 24
               

               
Conread position:
               
240-402
               

               
Cow position:
               
chr5:19561401-19561231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
39, 19
               

               
Conread position:
               
240-421
               

               
Cow position:
               
chr5:56433928-56434117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
39, 26
               

               
Conread position:
               
240-421
               

               
Cow position:
               
chr5:62996004-62996194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
39, 24
               

               
Conread position:
               
241-382
               

               
Cow position:
               
chr5:7139785-7139649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
38, 18
               

               
Conread position:
               
241-384
               

               
Cow position:
               
chr5:32935792-32935939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
50, 18
               

               
Conread position:
               
241-400
               

               
Cow position:
               
chr5:23855621-23855464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
38, 18
               

               
Conread position:
               
241-401
               

               
Cow position:
               
chr5:65745717-65745554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
38, 17
               

               
Conread position:
               
241-404
               

               
Cow position:
               
chr5:69682301-69682130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
38, 18
               

               
Conread position:
               
242-415
               

               
Cow position:
               
chr5:17987846-17987665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
242-415
               

               
Cow position:
               
chr5:34787621-34787801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
243-421
               

               
Cow position:
               
chr5:19052742-19052557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
36, 16
               

               
Conread position:
               
244-414
               

               
Cow position:
               
chr5:52029458-52029631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
45, 15
               

               
Conread position:
               
244-415
               

               
Cow position:
               
chr5:60207759-60207934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
35, 15
               

               
Conread position:
               
245-421
               

               
Cow position:
               
chr5:58401621-58401799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
34, 19
               

               
Conread position:
               
248-423
               

               
Cow position:
               
chr5:49207272-49207093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
31, 11
               

               
Conread position:
               
249-412
               

               
Cow position:
               
chr5:21721414-21721249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
30, 10
               

               
Conread position:
               
252-419
               

               
Cow position:
               
chr5:59662999-59662825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
27, 12
               

               
Conread position:
               
252-423
               

               
Cow position:
               
chr5:43611756-43611935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
253-417
               

               
Cow position:
               
chr5:12504730-12504564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
26, 8
               

               
Conread position:
               
255-404
               

               
Cow position:
               
chr5:60523793-60523944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
24, 88
               

               
Conread position:
               
255-407
               

               
Cow position:
               
chr5:4981511-4981665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
255-412
               

               
Cow position:
               
chr5:34288192-34288028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
255-418
               

               
Cow position:
               
chr5:46479181-46479015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
255-423
               

               
Cow position:
               
chr5:19811582-19811757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
256-412
               

               
Cow position:
               
chr5:57447604-57447439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
256-418
               

               
Cow position:
               
chr5:38079432-38079606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
27, 57
               

               
Conread position:
               
256-419
               

               
Cow position:
               
chr5:15770393-15770220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
23, 10
               

               
Conread position:
               
256-423
               

               
Cow position:
               
chr5:29599484-29599315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
23, 83
               

               
Conread position:
               
257-414
               

               
Cow position:
               
chr5:58487439-58487600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
22, 11
               

               
Conread position:
               
259-412
               

               
Cow position:
               
chr5:54713000-54712842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
20, 29
               

               
Conread position:
               
259-422
               

               
Cow position:
               
chr5:22957475-22957639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
21, 75
               

               
Conread position:
               
259-423
               

               
Cow position:
               
chr5:56643132-56643304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
263-420
               

               
Cow position:
               
chr5:24108991-24108825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
264-418
               

               
Cow position:
               
chr5:67456774-67456622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
15, 59
               

               
Conread position:
               
268-418
               

               
Cow position:
               
chr5:64061093-64061245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
11, 71
               

               
Conread position:
               
270-419
               

               
Cow position:
               
chr5:71387283-71387432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
9, 67
               

               
Conread position:
               
271-421
               

               
Cow position:
               
chr5:56624440-56624280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
278-404
               

               
Cow position:
               
chr5:22898224-22898102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
13, 68
               

               
Conread position:
               
278-411
               

               
Cow position:
               
chr5:35320474-35320343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
13, 56
               

               
Conread position:
               
278-419
               

               
Cow position:
               
chr5:44868442-44868587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
278-421
               

               
Cow position:
               
chr5:34639207-34639359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
278-423
               

               
Cow position:
               
chr5:28660315-28660467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
279-419
               

               
Cow position:
               
chr5:14000731-14000871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
10, 49
               

               
Conread position:
               
279-423
               

               
Cow position:
               
chr5:75712052-75711901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
12, 38
               

               
Conread position:
               
282-421
               

               
Cow position:
               
chr5:43434914-43434768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
287-419
               

               
Cow position:
               
chr5:13471203-13471342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
290-421
               

               
Cow position:
               
chr5:22889052-22888922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
303-422
               

               
Cow position:
               
chr5:21375003-21374880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
82, 0
               
Show alignments to all cow chromosomes.