Non-Coding RNA Search

Cow genome map


           Conread name:
           rcmu26_a6.y1
        

               Conread position:
               188-479
               

               Cow position:
               chrX:5134767-5134476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               222
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               69, 22
               

               Conread position:
               198-445
               

               Cow position:
               chrX:5487662-5487897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               185
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               28, 49
               

               Conread position:
               200-479
               

               Cow position:
               chrX:11633963-11633683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               197
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               17, 33
               

               Conread position:
               200-483
               

               Cow position:
               chrX:2936241-2935954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 65
               

               Conread position:
               203-470
               

               Cow position:
               chrX:31744732-31744995 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               190
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               10, 35
               

               Conread position:
               205-480
               

               Cow position:
               chrX:22115031-22115317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               206-470
               

               Cow position:
               chrX:4560012-4559749 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               191
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               34, 22
               

               Conread position:
               213-485
               

               Cow position:
               chrX:4268795-4269070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               17, 105
               

               Conread position:
               215-437
               

               Cow position:
               chrX:14135948-14135720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               171
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               36, 129
               

               Conread position:
               217-484
               

               Cow position:
               chrX:3806944-3806678 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               189
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               45, 26
               

               Conread position:
               219-460
               

               Cow position:
               chrX:20340391-20340623 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               172
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               8, 96
               

               Conread position:
               219-480
               

               Cow position:
               chrX:32821306-32821029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               197
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               9, 232
               

               Conread position:
               220-441
               

               Cow position:
               chrX:11454437-11454225 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               220-483
               

               Cow position:
               chrX:42331536-42331275 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               185
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               223, 36
               

               Conread position:
               224-445
               

               Cow position:
               chrX:34991622-34991399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               12, 117
               

               Conread position:
               224-470
               

               Cow position:
               chrX:19018570-19018821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               89, 21
               

               Conread position:
               225-477
               

               Cow position:
               chrX:41941886-41941626 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               177
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               8, 0
               

               Conread position:
               228-434
               

               Cow position:
               chrX:23136986-23136786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               143
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               228-483
               

               Cow position:
               chrX:6544500-6544254 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               183
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               229-446
               

               Cow position:
               chrX:18439251-18439030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               85, 27
               

               Conread position:
               229-486
               

               Cow position:
               chrX:41878679-41878936 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               22, 67
               

               Conread position:
               230-396
               

               Cow position:
               chrX:47979552-47979381 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               134
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               8, 27
               

               Conread position:
               230-424
               

               Cow position:
               chrX:15100230-15100039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               84, 31
               

               Conread position:
               230-440
               

               Cow position:
               chrX:4403572-4403357 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               146
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               83, 90
               

               Conread position:
               230-441
               

               Cow position:
               chrX:27270623-27270414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               153
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               84, 63
               

               Conread position:
               230-470
               

               Cow position:
               chrX:35285428-35285183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               167
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               84, 0
               

               Conread position:
               230-477
               

               Cow position:
               chrX:21642226-21642478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               167
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               30, 245
               

               Conread position:
               230-479
               

               Cow position:
               chrX:28940499-28940241 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 108
               

               Conread position:
               230-484
               

               Cow position:
               chrX:5118246-5118505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               195
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               84, 29
               

               Conread position:
               231-479
               

               Cow position:
               chrX:11656329-11656082 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 25
               

               Conread position:
               231-484
               

               Cow position:
               chrX:17293209-17292951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               170
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               83, 144
               

               Conread position:
               231-485
               

               Cow position:
               chrX:31948681-31948945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               232-432
               

               Cow position:
               chrX:37867506-37867301 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               141
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               82, 0
               

               Conread position:
               232-478
               

               Cow position:
               chrX:43008862-43008611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               8, 25
               

               Conread position:
               232-483
               

               Cow position:
               chrX:23563539-23563794 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               167
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               82, 24
               

               Conread position:
               232-486
               

               Cow position:
               chrX:27508772-27509025 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               81, 145
               

               Conread position:
               233-394
               

               Cow position:
               chrX:47730731-47730568 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               120
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               80, 5
               

               Conread position:
               233-438
               

               Cow position:
               chrX:46068511-46068717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               152
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               21, 43
               

               Conread position:
               233-441
               

               Cow position:
               chrX:37751860-37752067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               144
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               81, 109
               

               Conread position:
               233-480
               

               Cow position:
               chrX:34532760-34532520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               179
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               81, 23
               

               Conread position:
               233-483
               

               Cow position:
               chrX:27145849-27145601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               192
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               234-485
               

               Cow position:
               chrX:40320659-40320401 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               169
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               235-396
               

               Cow position:
               chrX:40108095-40108259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               120
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               235-436
               

               Cow position:
               chrX:42461378-42461574 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               139
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               118, 79
               

               Conread position:
               235-441
               

               Cow position:
               chrX:20666651-20666862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               18, 84
               

               Conread position:
               235-441
               

               Cow position:
               chrX:34398534-34398745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               144
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               78, 133
               

               Conread position:
               235-456
               

               Cow position:
               chrX:32867121-32866899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               173
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 93
               

               Conread position:
               235-480
               

               Cow position:
               chrX:19394808-19394553 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               189
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               236-399
               

               Cow position:
               chrX:1571348-1571508 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               118
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               236-421
               

               Cow position:
               chrX:26881831-26882021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               236-423
               

               Cow position:
               chrX:17525629-17525810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               236-441
               

               Cow position:
               chrX:46910055-46909854 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               144
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               236-463
               

               Cow position:
               chrX:47855225-47854998 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               166
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               77, 102
               

               Conread position:
               236-470
               

               Cow position:
               chrX:25815652-25815891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               170
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               77, 20
               

               Conread position:
               236-476
               

               Cow position:
               chrX:9650783-9651020 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               175
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               78, 25
               

               Conread position:
               236-480
               

               Cow position:
               chrX:16984885-16984641 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 103
               

               Conread position:
               236-483
               

               Cow position:
               chrX:20339644-20339894 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               178
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               15, 55
               

               Conread position:
               236-483
               

               Cow position:
               chrX:40826501-40826753 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               24, 140
               

               Conread position:
               236-483
               

               Cow position:
               chrX:48071410-48071158 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               169
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               6, 21
               

               Conread position:
               236-484
               

               Cow position:
               chrX:18111629-18111374 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               236-484
               

               Cow position:
               chrX:26843017-26843274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               236-484
               

               Cow position:
               chrX:27431677-27431922 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               191
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               78, 20
               

               Conread position:
               236-484
               

               Cow position:
               chrX:35885487-35885731 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               179
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               77, 26
               

               Conread position:
               236-484
               

               Cow position:
               chrX:48474160-48473903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               172
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               29, 136
               

               Conread position:
               237-362
               

               Cow position:
               chrX:15533963-15534094 (view UCSC Genome Browser custom track)
               

               Alignm length:
               132
               

               Alignm identity:
               106
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               237-437
               

               Cow position:
               chrX:16763683-16763882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               138
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               80, 0
               

               Conread position:
               237-461
               

               Cow position:
               chrX:5026497-5026275 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               54, 19
               

               Conread position:
               237-470
               

               Cow position:
               chrX:27705837-27705597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               172
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               13, 232
               

               Conread position:
               237-470
               

               Cow position:
               chrX:36866420-36866183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               73, 143
               

               Conread position:
               237-479
               

               Cow position:
               chrX:34412095-34411847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               190
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               237-480
               

               Cow position:
               chrX:34315774-34315519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               237-480
               

               Cow position:
               chrX:45429786-45430022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               237-483
               

               Cow position:
               chrX:33001145-33000901 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               172
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               102, 76
               

               Conread position:
               237-484
               

               Cow position:
               chrX:42449768-42450019 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               179
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               77, 19
               

               Conread position:
               238-409
               

               Cow position:
               chrX:1938259-1938085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               122
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               238-423
               

               Cow position:
               chrX:12989-12807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               130
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               238-434
               

               Cow position:
               chrX:41790181-41790383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               138
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               238-437
               

               Cow position:
               chrX:32747967-32747775 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               23, 32
               

               Conread position:
               238-441
               

               Cow position:
               chrX:12290962-12290758 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               76, 18
               

               Conread position:
               238-441
               

               Cow position:
               chrX:44995753-44995537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               154
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               12, 84
               

               Conread position:
               238-448
               

               Cow position:
               chrX:27207040-27206829 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               161
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               80, 50
               

               Conread position:
               238-460
               

               Cow position:
               chrX:46072581-46072797 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               13, 79
               

               Conread position:
               238-463
               

               Cow position:
               chrX:20345696-20345470 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               163
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               75, 18
               

               Conread position:
               238-466
               

               Cow position:
               chrX:27446928-27446700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               87, 18
               

               Conread position:
               238-476
               

               Cow position:
               chrX:32942833-32943072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               15, 51
               

               Conread position:
               238-477
               

               Cow position:
               chrX:15146949-15147190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               17, 56
               

               Conread position:
               238-477
               

               Cow position:
               chrX:25049036-25049279 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               76, 18
               

               Conread position:
               238-477
               

               Cow position:
               chrX:45110898-45110658 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               176
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               19, 100
               

               Conread position:
               238-478
               

               Cow position:
               chrX:17231982-17231737 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               75, 18
               

               Conread position:
               238-479
               

               Cow position:
               chrX:5919738-5919493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               173
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               76, 94
               

               Conread position:
               238-480
               

               Cow position:
               chrX:4289679-4289442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               182
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               192, 18
               

               Conread position:
               238-480
               

               Cow position:
               chrX:6599528-6599782 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               196
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               238-480
               

               Cow position:
               chrX:12979589-12979835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               190
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 160
               

               Conread position:
               238-480
               

               Cow position:
               chrX:27668713-27668958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 68
               

               Conread position:
               238-480
               

               Cow position:
               chrX:31729681-31729442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               75, 18
               

               Conread position:
               238-480
               

               Cow position:
               chrX:35986066-35985820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               196
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               16, 50
               

               Conread position:
               238-480
               

               Cow position:
               chrX:41526288-41526522 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               173
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               238-480
               

               Cow position:
               chrX:42492275-42492523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               172
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               70, 131
               

               Conread position:
               238-483
               

               Cow position:
               chrX:1087902-1088143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               80, 0
               

               Conread position:
               238-483
               

               Cow position:
               chrX:27306685-27306451 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               183
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               238-483
               

               Cow position:
               chrX:35276232-35275983 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               75, 208
               

               Conread position:
               238-484
               

               Cow position:
               chrX:3580194-3579940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               14, 131
               

               Conread position:
               238-484
               

               Cow position:
               chrX:36109369-36109622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               76, 18
               

               Conread position:
               238-484
               

               Cow position:
               chrX:44590815-44591066 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               166
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               76, 137
               

               Conread position:
               238-485
               

               Cow position:
               chrX:33539398-33539158 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               179
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               24, 57
               

               Conread position:
               238-485
               

               Cow position:
               chrX:41238115-41238357 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               17, 76
               

               Conread position:
               238-485
               

               Cow position:
               chrX:44192198-44192452 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               173
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               68, 18
               

               Conread position:
               238-485
               

               Cow position:
               chrX:46291382-46291132 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               185
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               75, 28
               

               Conread position:
               238-491
               

               Cow position:
               chrX:35659042-35658789 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               185
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               14, 51
               

               Conread position:
               239-429
               

               Cow position:
               chrX:11529584-11529397 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               28, 94
               

               Conread position:
               239-433
               

               Cow position:
               chrX:27442295-27442492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               74, 17
               

               Conread position:
               239-437
               

               Cow position:
               chrX:6389325-6389124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               144
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               16, 158
               

               Conread position:
               239-467
               

               Cow position:
               chrX:30962631-30962864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               74, 17
               

               Conread position:
               239-478
               

               Cow position:
               chrX:30133078-30133316 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               167
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               7, 53
               

               Conread position:
               239-479
               

               Cow position:
               chrX:12972923-12972682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               144, 79
               

               Conread position:
               239-480
               

               Cow position:
               chrX:7278151-7277911 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               161
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               109, 54
               

               Conread position:
               239-480
               

               Cow position:
               chrX:34420983-34420734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               166
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               34, 81
               

               Conread position:
               239-480
               

               Cow position:
               chrX:37232650-37232408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               167
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               40, 22
               

               Conread position:
               239-484
               

               Cow position:
               chrX:30672139-30672400 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               178
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               239-484
               

               Cow position:
               chrX:32574561-32574313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               162
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               239-484
               

               Cow position:
               chrX:39353018-39352781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               16, 76
               

               Conread position:
               240-398
               

               Cow position:
               chrX:43028473-43028314 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               122
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               82, 78
               

               Conread position:
               240-411
               

               Cow position:
               chrX:41215566-41215391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               145
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               74, 16
               

               Conread position:
               240-419
               

               Cow position:
               chrX:4750093-4750271 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               140
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               9, 57
               

               Conread position:
               240-440
               

               Cow position:
               chrX:43150678-43150471 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               144
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               17, 128
               

               Conread position:
               240-453
               

               Cow position:
               chrX:35409996-35409779 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               73, 145
               

               Conread position:
               240-478
               

               Cow position:
               chrX:12437041-12437267 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               177
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               240-480
               

               Cow position:
               chrX:5637935-5638169 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               74, 79
               

               Conread position:
               240-480
               

               Cow position:
               chrX:34565527-34565286 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               177
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               73, 16
               

               Conread position:
               240-480
               

               Cow position:
               chrX:46588062-46587822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               167
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               74, 16
               

               Conread position:
               240-485
               

               Cow position:
               chrX:13177240-13177483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               189
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               203, 47
               

               Conread position:
               240-485
               

               Cow position:
               chrX:17956933-17956688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               74, 166
               

               Conread position:
               241-381
               

               Cow position:
               chrX:8759865-8759720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               115
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               72, 15
               

               Conread position:
               241-399
               

               Cow position:
               chrX:35509438-35509598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               116
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               73, 15
               

               Conread position:
               241-441
               

               Cow position:
               chrX:2314373-2314580 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               151
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               22, 129
               

               Conread position:
               241-441
               

               Cow position:
               chrX:17498564-17498361 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               75, 15
               

               Conread position:
               241-470
               

               Cow position:
               chrX:44055046-44054812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               241-477
               

               Cow position:
               chrX:39179989-39180230 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               166
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               11, 45
               

               Conread position:
               241-477
               

               Cow position:
               chrX:47345573-47345330 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               174
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               73, 112
               

               Conread position:
               241-478
               

               Cow position:
               chrX:42894165-42893926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               170
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               77, 93
               

               Conread position:
               241-479
               

               Cow position:
               chrX:36356347-36356113 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               73, 145
               

               Conread position:
               241-480
               

               Cow position:
               chrX:42246939-42247183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               75, 15
               

               Conread position:
               241-483
               

               Cow position:
               chrX:24332020-24331774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               73, 235
               

               Conread position:
               241-484
               

               Cow position:
               chrX:44201802-44202050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               160
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               242-399
               

               Cow position:
               chrX:37717964-37717803 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               118
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               71, 156
               

               Conread position:
               242-407
               

               Cow position:
               chrX:22864017-22864190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               127
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               15, 74
               

               Conread position:
               242-409
               

               Cow position:
               chrX:40556221-40556388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               133
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               121, 78
               

               Conread position:
               242-421
               

               Cow position:
               chrX:11602246-11602424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               137
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               72, 18
               

               Conread position:
               242-480
               

               Cow position:
               chrX:43115391-43115151 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               184
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 186
               

               Conread position:
               242-490
               

               Cow position:
               chrX:24170484-24170739 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               71, 14
               

               Conread position:
               243-410
               

               Cow position:
               chrX:4486783-4486954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               129
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               243-437
               

               Cow position:
               chrX:34270801-34270604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               137
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               74, 13
               

               Conread position:
               243-460
               

               Cow position:
               chrX:28068091-28067870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               71, 13
               

               Conread position:
               243-484
               

               Cow position:
               chrX:32330412-32330164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               168
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               73, 190
               

               Conread position:
               243-485
               

               Cow position:
               chrX:9201784-9201544 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               185
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 76
               

               Conread position:
               244-379
               

               Cow position:
               chrX:38726903-38727037 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               117
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               9, 84
               

               Conread position:
               244-380
               

               Cow position:
               chrX:13893045-13892917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               137
               

               Alignm identity:
               109
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               244-394
               

               Cow position:
               chrX:1996210-1996366 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               117
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               244-461
               

               Cow position:
               chrX:32877138-32877356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               152
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               18, 45
               

               Conread position:
               244-464
               

               Cow position:
               chrX:20583901-20583682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               172
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               11, 44
               

               Conread position:
               244-478
               

               Cow position:
               chrX:27175242-27175005 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               173
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               19, 192
               

               Conread position:
               244-479
               

               Cow position:
               chrX:22392747-22392983 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               182
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 116
               

               Conread position:
               244-480
               

               Cow position:
               chrX:36976194-36975952 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               168
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               22, 205
               

               Conread position:
               244-484
               

               Cow position:
               chrX:25035139-25035386 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               169
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               245-477
               

               Cow position:
               chrX:24335837-24336074 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               68, 130
               

               Conread position:
               245-479
               

               Cow position:
               chrX:161639-161413 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               161
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               245-479
               

               Cow position:
               chrX:30337715-30337951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               69, 166
               

               Conread position:
               245-479
               

               Cow position:
               chrX:45649109-45648875 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               169
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               171, 70
               

               Conread position:
               245-484
               

               Cow position:
               chrX:19469274-19469511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               17, 75
               

               Conread position:
               246-381
               

               Cow position:
               chrX:48043985-48044134 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               118
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               246-404
               

               Cow position:
               chrX:35029698-35029850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               123
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               246-420
               

               Cow position:
               chrX:11589128-11589307 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               132
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               246-437
               

               Cow position:
               chrX:5097556-5097756 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               146
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               67, 34
               

               Conread position:
               246-440
               

               Cow position:
               chrX:36367696-36367895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               67, 122
               

               Conread position:
               246-466
               

               Cow position:
               chrX:42855701-42855472 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               246-469
               

               Cow position:
               chrX:19356703-19356480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               14, 159
               

               Conread position:
               246-480
               

               Cow position:
               chrX:2523462-2523682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               246-480
               

               Cow position:
               chrX:20584550-20584328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               185
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               246-480
               

               Cow position:
               chrX:42480065-42479833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               179
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               46, 37
               

               Conread position:
               246-483
               

               Cow position:
               chrX:24749325-24749085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               68, 173
               

               Conread position:
               246-483
               

               Cow position:
               chrX:41871295-41871064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               188
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 81
               

               Conread position:
               246-484
               

               Cow position:
               chrX:29230245-29229994 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               180
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               247-408
               

               Cow position:
               chrX:45657698-45657868 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               126
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               247-421
               

               Cow position:
               chrX:39642391-39642564 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               138
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               165, 71
               

               Conread position:
               247-441
               

               Cow position:
               chrX:48822105-48822303 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               142
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               247-443
               

               Cow position:
               chrX:51665-51862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               66, 185
               

               Conread position:
               247-464
               

               Cow position:
               chrX:47079865-47079643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               158
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               18, 31
               

               Conread position:
               247-477
               

               Cow position:
               chrX:17524146-17524381 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               163
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               247-479
               

               Cow position:
               chrX:1466403-1466163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               184
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               14, 102
               

               Conread position:
               247-480
               

               Cow position:
               chrX:21986065-21986290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               176
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               247-480
               

               Cow position:
               chrX:34504816-34505048 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               186
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 91
               

               Conread position:
               247-480
               

               Cow position:
               chrX:38964334-38964108 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               164
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               247-483
               

               Cow position:
               chrX:34792086-34792314 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               184
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               247-484
               

               Cow position:
               chrX:38587607-38587847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               14, 37
               

               Conread position:
               247-485
               

               Cow position:
               chrX:6407780-6407541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               66, 14
               

               Conread position:
               247-491
               

               Cow position:
               chrX:23335738-23335984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               66, 173
               

               Conread position:
               248-468
               

               Cow position:
               chrX:29467545-29467766 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               12, 83
               

               Conread position:
               248-468
               

               Cow position:
               chrX:33854990-33855208 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               168
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               63, 39
               

               Conread position:
               248-470
               

               Cow position:
               chrX:16323779-16324004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               160
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               65, 158
               

               Conread position:
               248-480
               

               Cow position:
               chrX:13913311-13913070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               66, 121
               

               Conread position:
               248-483
               

               Cow position:
               chrX:4467187-4466964 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               183
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               248-483
               

               Cow position:
               chrX:29050478-29050247 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               174
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               108, 49
               

               Conread position:
               248-483
               

               Cow position:
               chrX:34314257-34314028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               179
               

               Alignm E-value:
               8.96831e-44
               

               Alignm gaps (pig, cow):
               75, 200
               

               Conread position:
               248-483
               

               Cow position:
               chrX:34836836-34837066 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               74, 39
               

               Conread position:
               248-483
               

               Cow position:
               chrX:38853447-38853195 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               187
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               66, 185
               

               Conread position:
               248-484
               

               Cow position:
               chrX:37072622-37072384 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               66, 92
               

               Conread position:
               248-484
               

               Cow position:
               chrX:41123281-41123058 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               248-485
               

               Cow position:
               chrX:22482452-22482701 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               14, 174
               

               Conread position:
               248-490
               

               Cow position:
               chrX:4996825-4996575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               177
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               45, 166
               

               Conread position:
               249-396
               

               Cow position:
               chrX:3494815-3494963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               116
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               65, 88
               

               Conread position:
               249-477
               

               Cow position:
               chrX:34377174-34376947 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               172
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               64, 89
               

               Conread position:
               249-480
               

               Cow position:
               chrX:26881327-26881565 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               182
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               65, 54
               

               Conread position:
               249-480
               

               Cow position:
               chrX:40035207-40035441 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               183
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               65, 21
               

               Conread position:
               249-483
               

               Cow position:
               chrX:31442604-31442832 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               169
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               249-485
               

               Cow position:
               chrX:42927595-42927831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               182
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               69, 52
               

               Conread position:
               249-486
               

               Cow position:
               chrX:15006922-15007154 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               13, 67
               

               Conread position:
               249-487
               

               Cow position:
               chrX:45977159-45976920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               175
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               64, 45
               

               Conread position:
               250-399
               

               Cow position:
               chrX:231792-231937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               120
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               64, 33
               

               Conread position:
               250-423
               

               Cow position:
               chrX:23497463-23497634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               250-438
               

               Cow position:
               chrX:1960191-1960383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               132
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               250-470
               

               Cow position:
               chrX:33654609-33654834 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               152
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               250-476
               

               Cow position:
               chrX:6414267-6414051 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               12, 34
               

               Conread position:
               250-479
               

               Cow position:
               chrX:37780877-37781108 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               166
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               12, 40
               

               Conread position:
               250-484
               

               Cow position:
               chrX:24365588-24365825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               166
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               63, 138
               

               Conread position:
               250-486
               

               Cow position:
               chrX:35224510-35224290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               169
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               250-486
               

               Cow position:
               chrX:35269090-35268861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               158
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               251-425
               

               Cow position:
               chrX:27170967-27170794 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               132
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               96, 18
               

               Conread position:
               251-433
               

               Cow position:
               chrX:17744854-17744678 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               63, 86
               

               Conread position:
               251-434
               

               Cow position:
               chrX:42875442-42875258 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               142
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               63, 86
               

               Conread position:
               251-438
               

               Cow position:
               chrX:42760486-42760294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               135
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               251-441
               

               Cow position:
               chrX:16555990-16556178 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               135
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               251-453
               

               Cow position:
               chrX:46079321-46079112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               158
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               63, 36
               

               Conread position:
               251-466
               

               Cow position:
               chrX:38094293-38094502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               158
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               71, 39
               

               Conread position:
               251-466
               

               Cow position:
               chrX:38302047-38301823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               163
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               251-479
               

               Cow position:
               chrX:40685096-40685327 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               173
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               251-486
               

               Cow position:
               chrX:32208594-32208828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               177
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               62, 55
               

               Conread position:
               252-396
               

               Cow position:
               chrX:37177099-37176958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               117
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               62, 35
               

               Conread position:
               252-420
               

               Cow position:
               chrX:42087058-42086887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               133
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               62, 35
               

               Conread position:
               252-453
               

               Cow position:
               chrX:23358885-23359084 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               62, 84
               

               Conread position:
               252-465
               

               Cow position:
               chrX:908173-907961 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               114, 62
               

               Conread position:
               252-480
               

               Cow position:
               chrX:29541996-29542217 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               61, 131
               

               Conread position:
               252-483
               

               Cow position:
               chrX:4152812-4153034 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               179
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               252-483
               

               Cow position:
               chrX:11325877-11326101 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               180
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               87, 12
               

               Conread position:
               252-484
               

               Cow position:
               chrX:20957469-20957238 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               182
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               62, 17
               

               Conread position:
               252-487
               

               Cow position:
               chrX:11654000-11653757 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               10, 64
               

               Conread position:
               253-402
               

               Cow position:
               chrX:31279696-31279846 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               124
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               61, 87
               

               Conread position:
               253-419
               

               Cow position:
               chrX:29681887-29682050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               128
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               253-421
               

               Cow position:
               chrX:23485761-23485580 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               132
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               253-440
               

               Cow position:
               chrX:40649133-40648933 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               59, 127
               

               Conread position:
               253-440
               

               Cow position:
               chrX:41858653-41858842 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               144
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               61, 87
               

               Conread position:
               253-441
               

               Cow position:
               chrX:4109416-4109223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               138
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               253-480
               

               Cow position:
               chrX:6559225-6559448 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               60, 135
               

               Conread position:
               253-480
               

               Cow position:
               chrX:38218944-38218714 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               253-486
               

               Cow position:
               chrX:39290586-39290353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               183
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               40, 85
               

               Conread position:
               253-486
               

               Cow position:
               chrX:40337142-40336905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               60, 171
               

               Conread position:
               254-450
               

               Cow position:
               chrX:41453529-41453332 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               254-484
               

               Cow position:
               chrX:11762781-11763005 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               256-410
               

               Cow position:
               chrX:6480367-6480526 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               127
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               256-426
               

               Cow position:
               chrX:5915419-5915242 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               129
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               256-433
               

               Cow position:
               chrX:31983350-31983538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               256-437
               

               Cow position:
               chrX:23471640-23471823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               58, 87
               

               Conread position:
               256-439
               

               Cow position:
               chrX:8642273-8642087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               134
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               57, 132
               

               Conread position:
               256-440
               

               Cow position:
               chrX:41454725-41454914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               135
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               57, 112
               

               Conread position:
               256-441
               

               Cow position:
               chrX:37749766-37749944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               130
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               256-452
               

               Cow position:
               chrX:40046335-40046547 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               21, 174
               

               Conread position:
               256-464
               

               Cow position:
               chrX:31480194-31479987 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               165
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               58, 84
               

               Conread position:
               256-475
               

               Cow position:
               chrX:38560778-38560564 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               157
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               256-478
               

               Cow position:
               chrX:10251974-10252196 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               168
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               58, 87
               

               Conread position:
               256-478
               

               Cow position:
               chrX:14883729-14883954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               157
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               78, 62
               

               Conread position:
               256-478
               

               Cow position:
               chrX:40680843-40680616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               162
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               256-479
               

               Cow position:
               chrX:16836066-16836285 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               172
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               256-479
               

               Cow position:
               chrX:36283568-36283339 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               157
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               57, 115
               

               Conread position:
               256-480
               

               Cow position:
               chrX:16762996-16762771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               129, 58
               

               Conread position:
               256-480
               

               Cow position:
               chrX:45502363-45502145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               187, 31
               

               Conread position:
               256-483
               

               Cow position:
               chrX:8869176-8869405 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               179
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 84
               

               Conread position:
               256-483
               

               Cow position:
               chrX:9251935-9252165 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               174
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               57, 86
               

               Conread position:
               256-483
               

               Cow position:
               chrX:12095543-12095777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               256-483
               

               Cow position:
               chrX:25207633-25207857 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               57, 75
               

               Conread position:
               256-483
               

               Cow position:
               chrX:26205230-26205451 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               156
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               256-483
               

               Cow position:
               chrX:27261418-27261188 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               168
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               58, 29
               

               Conread position:
               256-483
               

               Cow position:
               chrX:41027388-41027157 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               58, 221
               

               Conread position:
               256-484
               

               Cow position:
               chrX:4632626-4632864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               256-484
               

               Cow position:
               chrX:31250618-31250384 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               256-485
               

               Cow position:
               chrX:38549675-38549440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               256-485
               

               Cow position:
               chrX:42380884-42381117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               183
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 31
               

               Conread position:
               256-486
               

               Cow position:
               chrX:4399346-4399117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               58, 136
               

               Conread position:
               257-480
               

               Cow position:
               chrX:26493234-26493004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               155
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               56, 111
               

               Conread position:
               257-483
               

               Cow position:
               chrX:32910324-32910102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               57, 76
               

               Conread position:
               257-486
               

               Cow position:
               chrX:20168782-20168552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               57, 31
               

               Conread position:
               258-470
               

               Cow position:
               chrX:31489747-31489530 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               154
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               258-483
               

               Cow position:
               chrX:8917621-8917391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               155
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               55, 82
               

               Conread position:
               259-401
               

               Cow position:
               chrX:43059031-43059172 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               110
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               259-463
               

               Cow position:
               chrX:19761974-19761771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               142
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               100, 59
               

               Conread position:
               259-464
               

               Cow position:
               chrX:10516479-10516269 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               259-479
               

               Cow position:
               chrX:27511646-27511429 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               146
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               259-489
               

               Cow position:
               chrX:29478947-29478715 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               60, 164
               

               Conread position:
               260-420
               

               Cow position:
               chrX:6640648-6640487 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               120
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               53, 105
               

               Conread position:
               260-445
               

               Cow position:
               chrX:8327129-8326939 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               147
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               260-464
               

               Cow position:
               chrX:35382818-35383020 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               260-466
               

               Cow position:
               chrX:39220312-39220093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               260-470
               

               Cow position:
               chrX:1122323-1122533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               160
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               54, 21
               

               Conread position:
               260-480
               

               Cow position:
               chrX:38642466-38642249 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               177
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 37
               

               Conread position:
               260-483
               

               Cow position:
               chrX:22075019-22074792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               179
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               54, 25
               

               Conread position:
               260-483
               

               Cow position:
               chrX:27074827-27075054 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               260-483
               

               Cow position:
               chrX:44397235-44397012 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               159
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               53, 139
               

               Conread position:
               260-485
               

               Cow position:
               chrX:17795203-17794976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               53, 15
               

               Conread position:
               260-488
               

               Cow position:
               chrX:46532266-46532502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               159
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               53, 221
               

               Conread position:
               261-386
               

               Cow position:
               chrX:42216410-42216537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               129
               

               Alignm identity:
               101
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               52, 66
               

               Conread position:
               261-439
               

               Cow position:
               chrX:35681790-35681608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               135
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               52, 112
               

               Conread position:
               261-440
               

               Cow position:
               chrX:45759892-45759711 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               130
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               44, 76
               

               Conread position:
               261-480
               

               Cow position:
               chrX:31515395-31515173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               146
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               261-490
               

               Cow position:
               chrX:29601606-29601838 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               262-410
               

               Cow position:
               chrX:25420546-25420401 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               117
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               17, 58
               

               Conread position:
               262-459
               

               Cow position:
               chrX:44991195-44991392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               52, 70
               

               Conread position:
               263-479
               

               Cow position:
               chrX:35273593-35273364 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               158
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               50, 154
               

               Conread position:
               263-483
               

               Cow position:
               chrX:31436690-31436471 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               166
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               265-484
               

               Cow position:
               chrX:20152067-20151856 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               267-467
               

               Cow position:
               chrX:30824202-30824000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               147
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               46, 69
               

               Conread position:
               269-411
               

               Cow position:
               chrX:4366560-4366409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               115
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               269-480
               

               Cow position:
               chrX:34544001-34543784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               151
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               270-410
               

               Cow position:
               chrX:39419507-39419644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               108
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               270-441
               

               Cow position:
               chrX:31986358-31986535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               128
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               44, 81
               

               Conread position:
               270-461
               

               Cow position:
               chrX:41809961-41810149 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               270-480
               

               Cow position:
               chrX:4645700-4645913 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               145
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               270-480
               

               Cow position:
               chrX:41192903-41192704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               155
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               270-480
               

               Cow position:
               chrX:42282791-42282578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               149
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               44, 125
               

               Conread position:
               270-483
               

               Cow position:
               chrX:27228343-27228122 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               270-483
               

               Cow position:
               chrX:38208340-38208547 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               87, 50
               

               Conread position:
               270-483
               

               Cow position:
               chrX:42836395-42836178 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               270-485
               

               Cow position:
               chrX:30840755-30840533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               162, 43
               

               Conread position:
               270-486
               

               Cow position:
               chrX:45382847-45383052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               153
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               204, 43
               

               Conread position:
               272-480
               

               Cow position:
               chrX:46069973-46070172 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               116, 46
               

               Conread position:
               272-482
               

               Cow position:
               chrX:8731306-8731091 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               42, 153
               

               Conread position:
               272-482
               

               Cow position:
               chrX:24633909-24633682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               175
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               272-484
               

               Cow position:
               chrX:9634980-9635196 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               41, 18
               

               Conread position:
               274-480
               

               Cow position:
               chrX:35543094-35542895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               40, 67
               

               Conread position:
               277-484
               

               Cow position:
               chrX:41068927-41068720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               140
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               203, 41
               

               Conread position:
               277-485
               

               Cow position:
               chrX:31294362-31294577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               285-478
               

               Cow position:
               chrX:14275549-14275741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               286-480
               

               Cow position:
               chrX:13647586-13647785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               146
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               288-474
               

               Cow position:
               chrX:41862556-41862370 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               26, 52
               

               Conread position:
               288-483
               

               Cow position:
               chrX:23188593-23188783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               293-483
               

               Cow position:
               chrX:4515879-4515682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               21, 47
               

               Conread position:
               310-484
               

               Cow position:
               chrX:45846272-45846098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               123
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               11, 133
               

               Conread position:
               312-480
               

               Cow position:
               chrX:45175018-45174850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               33, 25
               

               Conread position:
               319-462
               

               Cow position:
               chrX:34508705-34508562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               108
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               319-472
               

               Cow position:
               chrX:36068178-36068023 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               113
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               319-480
               

               Cow position:
               chrX:40531882-40532043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               135
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               319-483
               

               Cow position:
               chrX:878221-878383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               137
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               319-483
               

               Cow position:
               chrX:33493938-33493776 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               119
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               29, 95
               

               Conread position:
               319-483
               

               Cow position:
               chrX:41884251-41884415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               121
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               320-470
               

               Cow position:
               chrX:28878013-28878164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               112
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               6, 0
               

               Conread position:
               320-475
               

               Cow position:
               chrX:616098-616254 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               121
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               320-476
               

               Cow position:
               chrX:38006610-38006762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               123
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               15, 33
               

               Conread position:
               320-478
               

               Cow position:
               chrX:43730064-43730221 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               114
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               122, 0
               

               Conread position:
               320-479
               

               Cow position:
               chrX:169386-169544 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               117
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               111, 0
               

               Conread position:
               320-479
               

               Cow position:
               chrX:618848-619001 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               124
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               19, 63
               

               Conread position:
               320-479
               

               Cow position:
               chrX:27393866-27394025 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               122
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               320-479
               

               Cow position:
               chrX:40269654-40269492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               122
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               320-480
               

               Cow position:
               chrX:17726136-17725975 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               126
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               320-480
               

               Cow position:
               chrX:18272901-18273055 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               120
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               320-480
               

               Cow position:
               chrX:36848419-36848578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               130
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               137, 41
               

               Conread position:
               320-483
               

               Cow position:
               chrX:7695908-7695748 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               118
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               321-479
               

               Cow position:
               chrX:29733432-29733591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               114
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               321-480
               

               Cow position:
               chrX:42171139-42171294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               115
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               324-477
               

               Cow position:
               chrX:6690102-6690257 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               113
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               324-479
               

               Cow position:
               chrX:5135364-5135522 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               123
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               66, 28
               

               Conread position:
               324-483
               

               Cow position:
               chrX:11717627-11717786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               115
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               325-468
               

               Cow position:
               chrX:23266569-23266427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               106
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               325-483
               

               Cow position:
               chrX:40557523-40557682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               117
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               326-471
               

               Cow position:
               chrX:24424249-24424392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               111
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               326-483
               

               Cow position:
               chrX:23092027-23091866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               123
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               327-479
               

               Cow position:
               chrX:42469789-42469941 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               113
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               104, 22
               

               Conread position:
               329-470
               

               Cow position:
               chrX:22914891-22915030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               104
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               329-470
               

               Cow position:
               chrX:23562783-23562642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               107
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               329-480
               

               Cow position:
               chrX:31312180-31312029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               125
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               329-483
               

               Cow position:
               chrX:42160774-42160624 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               117
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               84, 0
               

               Conread position:
               330-470
               

               Cow position:
               chrX:29553434-29553295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               105
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               331-464
               

               Cow position:
               chrX:41164760-41164630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               134
               

               Alignm identity:
               106
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               82, 0
               

               Conread position:
               335-479
               

               Cow position:
               chrX:19943091-19943233 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               107
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               336-479
               

               Cow position:
               chrX:4615868-4616010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               117
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               125, 9
               

               Conread position:
               336-480
               

               Cow position:
               chrX:29501740-29501881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               113
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               111, 0
               

               Conread position:
               337-480
               

               Cow position:
               chrX:38066311-38066455 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               107
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               340-480
               

               Cow position:
               chrX:25788764-25788905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               106
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               340-483
               

               Cow position:
               chrX:25328475-25328618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               111
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               13, 108
               

               Conread position:
               340-483
               

               Cow position:
               chrX:37986365-37986228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               111
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               340-483
               

               Cow position:
               chrX:46429679-46429822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               117
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               348-480
               

               Cow position:
               chrX:12082192-12082323 (view UCSC Genome Browser custom track)
               

               Alignm length:
               133
               

               Alignm identity:
               105
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               349-483
               

               Cow position:
               chrX:37574971-37574837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               100
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               351-478
               

               Cow position:
               chrX:29585248-29585121 (view UCSC Genome Browser custom track)
               

               Alignm length:
               128
               

               Alignm identity:
               101
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               352-483
               

               Cow position:
               chrX:19273579-19273710 (view UCSC Genome Browser custom track)
               

               Alignm length:
               132
               

               Alignm identity:
               106
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               0, 0
               
Show alignments to all cow chromosomes.
Conread position:	188-479
Cow position:	chrX:5134767-5134476 (view UCSC Genome Browser custom track)
Alignm length:	303
Alignm identity:	222
Alignm E-value:	7.00005e-41
Alignm gaps (pig, cow):	69, 22
Conread position:	198-445
Cow position:	chrX:5487662-5487897 (view UCSC Genome Browser custom track)
Alignm length:	250
Alignm identity:	185
Alignm E-value:	4e-36
Alignm gaps (pig, cow):	28, 49
Conread position:	200-479
Cow position:	chrX:11633963-11633683 (view UCSC Genome Browser custom track)
Alignm length:	285
Alignm identity:	197
Alignm E-value:	4e-35
Alignm gaps (pig, cow):	17, 33
Conread position:	200-483
Cow position:	chrX:2936241-2935954 (view UCSC Genome Browser custom track)
Alignm length:	293
Alignm identity:	221
Alignm E-value:	0
Alignm gaps (pig, cow):	14, 65
Conread position:	203-470
Cow position:	chrX:31744732-31744995 (view UCSC Genome Browser custom track)
Alignm length:	272
Alignm identity:	190
Alignm E-value:	3e-33
Alignm gaps (pig, cow):	10, 35
Conread position:	205-480
Cow position:	chrX:22115031-22115317 (view UCSC Genome Browser custom track)
Alignm length:	287
Alignm identity:	216
Alignm E-value:	0
Alignm gaps (pig, cow):	50, 0
Conread position:	206-470
Cow position:	chrX:4560012-4559749 (view UCSC Genome Browser custom track)
Alignm length:	271
Alignm identity:	191
Alignm E-value:	3e-33
Alignm gaps (pig, cow):	34, 22
Conread position:	213-485
Cow position:	chrX:4268795-4269070 (view UCSC Genome Browser custom track)
Alignm length:	278
Alignm identity:	181
Alignm E-value:	1e-24
Alignm gaps (pig, cow):	17, 105
Conread position:	215-437
Cow position:	chrX:14135948-14135720 (view UCSC Genome Browser custom track)
Alignm length:	231
Alignm identity:	171
Alignm E-value:	4e-36
Alignm gaps (pig, cow):	36, 129
Conread position:	217-484
Cow position:	chrX:3806944-3806678 (view UCSC Genome Browser custom track)
Alignm length:	270
Alignm identity:	189
Alignm E-value:	5e-38
Alignm gaps (pig, cow):	45, 26
Conread position:	219-460
Cow position:	chrX:20340391-20340623 (view UCSC Genome Browser custom track)
Alignm length:	244
Alignm identity:	172
Alignm E-value:	5e-28
Alignm gaps (pig, cow):	8, 96
Conread position:	219-480
Cow position:	chrX:32821306-32821029 (view UCSC Genome Browser custom track)
Alignm length:	279
Alignm identity:	197
Alignm E-value:	1e-33
Alignm gaps (pig, cow):	9, 232
Conread position:	220-441
Cow position:	chrX:11454437-11454225 (view UCSC Genome Browser custom track)
Alignm length:	222
Alignm identity:	155
Alignm E-value:	1e-26
Alignm gaps (pig, cow):	36, 0
Conread position:	220-483
Cow position:	chrX:42331536-42331275 (view UCSC Genome Browser custom track)
Alignm length:	270
Alignm identity:	185
Alignm E-value:	5e-28
Alignm gaps (pig, cow):	223, 36
Conread position:	224-445
Cow position:	chrX:34991622-34991399 (view UCSC Genome Browser custom track)
Alignm length:	226
Alignm identity:	169
Alignm E-value:	2e-39
Alignm gaps (pig, cow):	12, 117
Conread position:	224-470
Cow position:	chrX:19018570-19018821 (view UCSC Genome Browser custom track)
Alignm length:	254
Alignm identity:	176
Alignm E-value:	2e-31
Alignm gaps (pig, cow):	89, 21
Conread position:	225-477
Cow position:	chrX:41941886-41941626 (view UCSC Genome Browser custom track)
Alignm length:	261
Alignm identity:	177
Alignm E-value:	6e-29
Alignm gaps (pig, cow):	8, 0
Conread position:	228-434
Cow position:	chrX:23136986-23136786 (view UCSC Genome Browser custom track)
Alignm length:	207
Alignm identity:	143
Alignm E-value:	3e-24
Alignm gaps (pig, cow):	32, 0
Conread position:	228-483
Cow position:	chrX:6544500-6544254 (view UCSC Genome Browser custom track)
Alignm length:	256
Alignm identity:	183
Alignm E-value:	1e-37
Alignm gaps (pig, cow):	28, 0
Conread position:	229-446
Cow position:	chrX:18439251-18439030 (view UCSC Genome Browser custom track)
Alignm length:	223
Alignm identity:	152
Alignm E-value:	1e-24
Alignm gaps (pig, cow):	85, 27