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Cow genome map

           
Conread name:
           
rcmu27_f11.y1
        

               
Conread position:
               
108-324
               

               
Cow position:
               
chr1:34892285-34892505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
122-417
               

               
Cow position:
               
chr1:61725377-61725094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
107, 25
               

               
Conread position:
               
125-575
               

               
Cow position:
               
chr1:3924055-3923629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
214, 22
               

               
Conread position:
               
126-575
               

               
Cow position:
               
chr1:85867332-85867775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
23, 49
               

               
Conread position:
               
129-575
               

               
Cow position:
               
chr1:71079216-71078787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 43
               

               
Conread position:
               
133-337
               

               
Cow position:
               
chr1:68282541-68282748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
34, 14
               

               
Conread position:
               
136-575
               

               
Cow position:
               
chr1:5597451-5597037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
99, 73
               

               
Conread position:
               
145-575
               

               
Cow position:
               
chr1:34771746-34771321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
106, 32
               

               
Conread position:
               
146-351
               

               
Cow position:
               
chr1:97806551-97806752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
162, 28
               

               
Conread position:
               
146-362
               

               
Cow position:
               
chr1:79663907-79663694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
83, 28
               

               
Conread position:
               
146-416
               

               
Cow position:
               
chr1:55163681-55163938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
86, 28
               

               
Conread position:
               
147-280
               

               
Cow position:
               
chr1:9437789-9437657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
147-314
               

               
Cow position:
               
chr1:53207935-53207762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
84, 27
               

               
Conread position:
               
147-337
               

               
Cow position:
               
chr1:21092851-21093039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
102, 27
               

               
Conread position:
               
147-343
               

               
Cow position:
               
chr1:64160101-64160294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
128, 15
               

               
Conread position:
               
147-357
               

               
Cow position:
               
chr1:98708202-98708410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
190, 27
               

               
Conread position:
               
147-365
               

               
Cow position:
               
chr1:3035233-3035015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
189, 27
               

               
Conread position:
               
147-367
               

               
Cow position:
               
chr1:21835708-21835922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
190, 27
               

               
Conread position:
               
147-370
               

               
Cow position:
               
chr1:63905714-63905490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
85, 27
               

               
Conread position:
               
147-373
               

               
Cow position:
               
chr1:12871247-12871028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
191, 27
               

               
Conread position:
               
147-374
               

               
Cow position:
               
chr1:3752183-3751952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
19, 28
               

               
Conread position:
               
147-376
               

               
Cow position:
               
chr1:61724265-61724033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
120, 27
               

               
Conread position:
               
147-391
               

               
Cow position:
               
chr1:4619109-4618866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
78, 27
               

               
Conread position:
               
147-416
               

               
Cow position:
               
chr1:4573280-4573539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
92, 27
               

               
Conread position:
               
147-416
               

               
Cow position:
               
chr1:78783306-78783567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
126, 27
               

               
Conread position:
               
147-417
               

               
Cow position:
               
chr1:50679526-50679259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
128, 27
               

               
Conread position:
               
147-419
               

               
Cow position:
               
chr1:12596141-12595880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
147-471
               

               
Cow position:
               
chr1:53595085-53595393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
127, 27
               

               
Conread position:
               
147-495
               

               
Cow position:
               
chr1:20204786-20205125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 24
               

               
Conread position:
               
147-508
               

               
Cow position:
               
chr1:70434752-70435108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
56, 138
               

               
Conread position:
               
147-511
               

               
Cow position:
               
chr1:31499387-31499739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
120, 27
               

               
Conread position:
               
147-513
               

               
Cow position:
               
chr1:45289113-45288756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
90, 27
               

               
Conread position:
               
147-520
               

               
Cow position:
               
chr1:24534483-24534134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
190, 27
               

               
Conread position:
               
147-525
               

               
Cow position:
               
chr1:22826929-22827285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
284, 27
               

               
Conread position:
               
147-533
               

               
Cow position:
               
chr1:47233715-47233342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
192, 24
               

               
Conread position:
               
147-533
               

               
Cow position:
               
chr1:84239347-84238987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
192, 27
               

               
Conread position:
               
147-538
               

               
Cow position:
               
chr1:39069191-39068819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
191, 27
               

               
Conread position:
               
147-538
               

               
Cow position:
               
chr1:71253795-71253415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
89, 27
               

               
Conread position:
               
147-554
               

               
Cow position:
               
chr1:83082762-83083152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
66, 27
               

               
Conread position:
               
147-569
               

               
Cow position:
               
chr1:53458465-53458867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
186, 89
               

               
Conread position:
               
147-570
               

               
Cow position:
               
chr1:61742208-61741793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
152, 77
               

               
Conread position:
               
147-570
               

               
Cow position:
               
chr1:100761851-100762244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
192, 27
               

               
Conread position:
               
147-573
               

               
Cow position:
               
chr1:72035169-72034753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 11
               

               
Conread position:
               
147-573
               

               
Cow position:
               
chr1:96713054-96712632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
128, 27
               

               
Conread position:
               
147-575
               

               
Cow position:
               
chr1:1981350-1980934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
152, 27
               

               
Conread position:
               
147-575
               

               
Cow position:
               
chr1:3323618-3324049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 27
               

               
Conread position:
               
147-575
               

               
Cow position:
               
chr1:18937074-18936662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 27
               

               
Conread position:
               
147-575
               

               
Cow position:
               
chr1:29627155-29626735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 27
               

               
Conread position:
               
147-575
               

               
Cow position:
               
chr1:61564551-61564956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
82, 143
               

               
Conread position:
               
147-575
               

               
Cow position:
               
chr1:82936822-82936429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
284, 27
               

               
Conread position:
               
147-575
               

               
Cow position:
               
chr1:87072464-87072869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
190, 27
               

               
Conread position:
               
147-575
               

               
Cow position:
               
chr1:93499382-93499794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
85, 27
               

               
Conread position:
               
148-462
               

               
Cow position:
               
chr1:1916475-1916162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
193, 123
               

               
Conread position:
               
148-526
               

               
Cow position:
               
chr1:21787087-21787465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
78, 26
               

               
Conread position:
               
148-532
               

               
Cow position:
               
chr1:40531348-40530967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 26
               

               
Conread position:
               
148-575
               

               
Cow position:
               
chr1:81290279-81290679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
149-526
               

               
Cow position:
               
chr1:97611891-97611528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
282, 28
               

               
Conread position:
               
150-296
               

               
Cow position:
               
chr1:53650651-53650800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
75, 130
               

               
Conread position:
               
155-352
               

               
Cow position:
               
chr1:88970827-88971022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
182, 19
               

               
Conread position:
               
155-402
               

               
Cow position:
               
chr1:91142390-91142143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
93, 135
               

               
Conread position:
               
155-520
               

               
Cow position:
               
chr1:100705897-100706250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
17, 99
               

               
Conread position:
               
155-565
               

               
Cow position:
               
chr1:52488194-52487813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
158-331
               

               
Cow position:
               
chr1:81363763-81363925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
158-458
               

               
Cow position:
               
chr1:99614217-99614507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
66, 121
               

               
Conread position:
               
158-569
               

               
Cow position:
               
chr1:57575998-57575595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
69, 126
               

               
Conread position:
               
158-575
               

               
Cow position:
               
chr1:31765626-31765195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 16
               

               
Conread position:
               
160-373
               

               
Cow position:
               
chr1:56657811-56658017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
177, 14
               

               
Conread position:
               
160-575
               

               
Cow position:
               
chr1:72069057-72068656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 52
               

               
Conread position:
               
161-320
               

               
Cow position:
               
chr1:43893698-43893855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
33, 125
               

               
Conread position:
               
162-370
               

               
Cow position:
               
chr1:1801914-1802121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
173, 12
               

               
Conread position:
               
162-374
               

               
Cow position:
               
chr1:55135606-55135817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
15, 114
               

               
Conread position:
               
162-406
               

               
Cow position:
               
chr1:81859457-81859208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
62, 12
               

               
Conread position:
               
162-512
               

               
Cow position:
               
chr1:66430071-66430406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
70, 9
               

               
Conread position:
               
163-329
               

               
Cow position:
               
chr1:77720457-77720296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
163-337
               

               
Cow position:
               
chr1:24235745-24235570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
66, 11
               

               
Conread position:
               
163-337
               

               
Cow position:
               
chr1:36613500-36613328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
163-361
               

               
Cow position:
               
chr1:44769336-44769138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
173, 11
               

               
Conread position:
               
163-371
               

               
Cow position:
               
chr1:69941189-69940983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
170, 11
               

               
Conread position:
               
163-382
               

               
Cow position:
               
chr1:20287890-20288111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
69, 11
               

               
Conread position:
               
163-396
               

               
Cow position:
               
chr1:69415942-69415703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
62, 13
               

               
Conread position:
               
163-414
               

               
Cow position:
               
chr1:94403991-94404231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
211, 70
               

               
Conread position:
               
163-429
               

               
Cow position:
               
chr1:22448811-22448549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
174, 11
               

               
Conread position:
               
163-430
               

               
Cow position:
               
chr1:78794960-78794703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
104, 11
               

               
Conread position:
               
163-499
               

               
Cow position:
               
chr1:101867132-101867452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
272, 20
               

               
Conread position:
               
163-508
               

               
Cow position:
               
chr1:37309736-37309408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
163-511
               

               
Cow position:
               
chr1:101634476-101634826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
62, 125
               

               
Conread position:
               
163-524
               

               
Cow position:
               
chr1:4027637-4027990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
66, 11
               

               
Conread position:
               
163-536
               

               
Cow position:
               
chr1:56711846-56711464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
66, 13
               

               
Conread position:
               
163-539
               

               
Cow position:
               
chr1:34300773-34300407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 87
               

               
Conread position:
               
163-567
               

               
Cow position:
               
chr1:634967-635364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 14
               

               
Conread position:
               
163-569
               

               
Cow position:
               
chr1:25383437-25383838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 124
               

               
Conread position:
               
163-570
               

               
Cow position:
               
chr1:76019906-76019527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
174, 11
               

               
Conread position:
               
163-570
               

               
Cow position:
               
chr1:102266492-102266100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
117, 66
               

               
Conread position:
               
163-571
               

               
Cow position:
               
chr1:48580906-48581301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 84
               

               
Conread position:
               
163-573
               

               
Cow position:
               
chr1:1053364-1053755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
120, 11
               

               
Conread position:
               
163-573
               

               
Cow position:
               
chr1:54199607-54199221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 11
               

               
Conread position:
               
163-573
               

               
Cow position:
               
chr1:89381054-89381447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
150, 11
               

               
Conread position:
               
163-575
               

               
Cow position:
               
chr1:33719888-33720279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 130
               

               
Conread position:
               
163-575
               

               
Cow position:
               
chr1:41181620-41182011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 11
               

               
Conread position:
               
163-575
               

               
Cow position:
               
chr1:68276182-68276589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 11
               

               
Conread position:
               
163-575
               

               
Cow position:
               
chr1:68818023-68817625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 23
               

               
Conread position:
               
163-575
               

               
Cow position:
               
chr1:68854949-68855341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
163-575
               

               
Cow position:
               
chr1:79844243-79844654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
141, 72
               

               
Conread position:
               
163-575
               

               
Cow position:
               
chr1:91066373-91065982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
174, 11
               

               
Conread position:
               
164-575
               

               
Cow position:
               
chr1:63240719-63241151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
13, 209
               

               
Conread position:
               
165-347
               

               
Cow position:
               
chr1:71325469-71325288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
173, 9
               

               
Conread position:
               
165-361
               

               
Cow position:
               
chr1:67290643-67290836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
61, 9
               

               
Conread position:
               
165-369
               

               
Cow position:
               
chr1:78689711-78689919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
59, 9
               

               
Conread position:
               
165-389
               

               
Cow position:
               
chr1:61350925-61351150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
83, 9
               

               
Conread position:
               
165-391
               

               
Cow position:
               
chr1:10116018-10115792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
64, 9
               

               
Conread position:
               
165-480
               

               
Cow position:
               
chr1:102647491-102647190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
172, 9
               

               
Conread position:
               
165-498
               

               
Cow position:
               
chr1:51981005-51981323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
64, 9
               

               
Conread position:
               
165-511
               

               
Cow position:
               
chr1:19482295-19481968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
162, 9
               

               
Conread position:
               
165-512
               

               
Cow position:
               
chr1:88618371-88618711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 9
               

               
Conread position:
               
165-537
               

               
Cow position:
               
chr1:45007244-45007608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
64, 9
               

               
Conread position:
               
165-538
               

               
Cow position:
               
chr1:81613163-81613529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 9
               

               
Conread position:
               
165-573
               

               
Cow position:
               
chr1:52435048-52435448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 13
               

               
Conread position:
               
165-573
               

               
Cow position:
               
chr1:78857545-78857153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 9
               

               
Conread position:
               
165-573
               

               
Cow position:
               
chr1:92197238-92197630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
50, 12
               

               
Conread position:
               
165-575
               

               
Cow position:
               
chr1:24133278-24132888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 9
               

               
Conread position:
               
165-575
               

               
Cow position:
               
chr1:34856851-34856450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 9
               

               
Conread position:
               
165-575
               

               
Cow position:
               
chr1:52329751-52329346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
110, 9
               

               
Conread position:
               
165-575
               

               
Cow position:
               
chr1:73584624-73584230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 9
               

               
Conread position:
               
165-575
               

               
Cow position:
               
chr1:78810813-78811213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
67, 9
               

               
Conread position:
               
168-361
               

               
Cow position:
               
chr1:71818682-71818484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
56, 111
               

               
Conread position:
               
169-370
               

               
Cow position:
               
chr1:34000687-34000895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
55, 5
               

               
Conread position:
               
170-348
               

               
Cow position:
               
chr1:7449914-7450091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
167, 66
               

               
Conread position:
               
171-299
               

               
Cow position:
               
chr1:6240392-6240519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
171-371
               

               
Cow position:
               
chr1:45535484-45535687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
65, 120
               

               
Conread position:
               
171-447
               

               
Cow position:
               
chr1:98562943-98563212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
55, 25
               

               
Conread position:
               
171-573
               

               
Cow position:
               
chr1:1956545-1956161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
314, 104
               

               
Conread position:
               
171-575
               

               
Cow position:
               
chr1:61392009-61391620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
61, 32
               

               
Conread position:
               
171-575
               

               
Cow position:
               
chr1:78091819-78092215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 56
               

               
Conread position:
               
173-322
               

               
Cow position:
               
chr1:67916820-67916969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
12, 71
               

               
Conread position:
               
173-370
               

               
Cow position:
               
chr1:53613408-53613213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
140, 49
               

               
Conread position:
               
173-507
               

               
Cow position:
               
chr1:3167288-3166966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
52, 107
               

               
Conread position:
               
173-507
               

               
Cow position:
               
chr1:93810226-93810539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
168, 70
               

               
Conread position:
               
173-530
               

               
Cow position:
               
chr1:92437206-92436856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 131
               

               
Conread position:
               
173-567
               

               
Cow position:
               
chr1:95056840-95057210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 102
               

               
Conread position:
               
173-570
               

               
Cow position:
               
chr1:6305084-6304707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
59, 194
               

               
Conread position:
               
173-573
               

               
Cow position:
               
chr1:71295531-71295126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
11, 119
               

               
Conread position:
               
173-575
               

               
Cow position:
               
chr1:57637157-57637535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 131
               

               
Conread position:
               
174-301
               

               
Cow position:
               
chr1:24571104-24570976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
101, 54
               

               
Conread position:
               
174-301
               

               
Cow position:
               
chr1:62996280-62996405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
174-304
               

               
Cow position:
               
chr1:26159646-26159514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
58, 105
               

               
Conread position:
               
174-304
               

               
Cow position:
               
chr1:65637990-65638123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
50, 105
               

               
Conread position:
               
174-307
               

               
Cow position:
               
chr1:95071771-95071901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
174-307
               

               
Cow position:
               
chr1:98557998-98557859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
174-316
               

               
Cow position:
               
chr1:94378819-94378963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
120, 40
               

               
Conread position:
               
174-320
               

               
Cow position:
               
chr1:13614933-13614783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
53, 31
               

               
Conread position:
               
174-324
               

               
Cow position:
               
chr1:57155616-57155463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
56, 140
               

               
Conread position:
               
174-327
               

               
Cow position:
               
chr1:33717007-33717165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
174-327
               

               
Cow position:
               
chr1:74013481-74013322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
174-328
               

               
Cow position:
               
chr1:99118171-99118333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
174-334
               

               
Cow position:
               
chr1:8532427-8532270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
76, 14
               

               
Conread position:
               
174-336
               

               
Cow position:
               
chr1:19545314-19545153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
65, 113
               

               
Conread position:
               
174-336
               

               
Cow position:
               
chr1:84786556-84786721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
55, 121
               

               
Conread position:
               
174-337
               

               
Cow position:
               
chr1:61246368-61246212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
174-338
               

               
Cow position:
               
chr1:20125397-20125561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
101, 60
               

               
Conread position:
               
174-347
               

               
Cow position:
               
chr1:86484741-86484925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
174-348
               

               
Cow position:
               
chr1:57639735-57639562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
164, 75
               

               
Conread position:
               
174-354
               

               
Cow position:
               
chr1:55194678-55194497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
101, 54
               

               
Conread position:
               
174-355
               

               
Cow position:
               
chr1:75967222-75967399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
163, 53
               

               
Conread position:
               
174-357
               

               
Cow position:
               
chr1:95327367-95327181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
55, 117
               

               
Conread position:
               
174-358
               

               
Cow position:
               
chr1:11770508-11770321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
58, 100
               

               
Conread position:
               
174-358
               

               
Cow position:
               
chr1:67821424-67821240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
159, 88
               

               
Conread position:
               
174-358
               

               
Cow position:
               
chr1:98380791-98380601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
55, 86
               

               
Conread position:
               
174-361
               

               
Cow position:
               
chr1:73761566-73761385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
163, 68
               

               
Conread position:
               
174-362
               

               
Cow position:
               
chr1:57396141-57395956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
163, 69
               

               
Conread position:
               
174-362
               

               
Cow position:
               
chr1:68827120-68826930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
163, 97
               

               
Conread position:
               
174-363
               

               
Cow position:
               
chr1:21131299-21131119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
163, 45
               

               
Conread position:
               
174-364
               

               
Cow position:
               
chr1:23634115-23633934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
139, 50
               

               
Conread position:
               
174-364
               

               
Cow position:
               
chr1:32631252-32631438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
101, 58
               

               
Conread position:
               
174-365
               

               
Cow position:
               
chr1:3776828-3776640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
96, 70
               

               
Conread position:
               
174-365
               

               
Cow position:
               
chr1:4293848-4294033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
159, 73
               

               
Conread position:
               
174-365
               

               
Cow position:
               
chr1:53540176-53540368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
45, 117
               

               
Conread position:
               
174-369
               

               
Cow position:
               
chr1:24655745-24655941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
69, 182
               

               
Conread position:
               
174-370
               

               
Cow position:
               
chr1:3137719-3137911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
163, 10
               

               
Conread position:
               
174-370
               

               
Cow position:
               
chr1:49839293-49839487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
163, 104
               

               
Conread position:
               
174-370
               

               
Cow position:
               
chr1:55146587-55146783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
55, 92
               

               
Conread position:
               
174-370
               

               
Cow position:
               
chr1:68995957-68996164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
55, 170
               

               
Conread position:
               
174-370
               

               
Cow position:
               
chr1:71748221-71748026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
101, 128
               

               
Conread position:
               
174-371
               

               
Cow position:
               
chr1:11772295-11772091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
174-371
               

               
Cow position:
               
chr1:57698668-57698465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
62, 134
               

               
Conread position:
               
174-371
               

               
Cow position:
               
chr1:87216248-87216441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
163, 36
               

               
Conread position:
               
174-373
               

               
Cow position:
               
chr1:1165387-1165586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
58, 105
               

               
Conread position:
               
174-373
               

               
Cow position:
               
chr1:57264201-57264011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
163, 60
               

               
Conread position:
               
174-374
               

               
Cow position:
               
chr1:31235146-31234945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
51, 101
               

               
Conread position:
               
174-374
               

               
Cow position:
               
chr1:84116187-84116382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
157, 42
               

               
Conread position:
               
174-374
               

               
Cow position:
               
chr1:84240685-84240878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
127, 53
               

               
Conread position:
               
174-377
               

               
Cow position:
               
chr1:82504752-82504965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
58, 108
               

               
Conread position:
               
174-382
               

               
Cow position:
               
chr1:71952873-71953071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
163, 69
               

               
Conread position:
               
174-383
               

               
Cow position:
               
chr1:19998250-19998045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
163, 101
               

               
Conread position:
               
174-385
               

               
Cow position:
               
chr1:101822712-101822504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
101, 61
               

               
Conread position:
               
174-394
               

               
Cow position:
               
chr1:43839313-43839533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
65, 99
               

               
Conread position:
               
174-396
               

               
Cow position:
               
chr1:97755307-97755525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
162, 62
               

               
Conread position:
               
174-400
               

               
Cow position:
               
chr1:77462150-77462367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
157, 27
               

               
Conread position:
               
174-403
               

               
Cow position:
               
chr1:22467716-22467943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
127, 197
               

               
Conread position:
               
174-406
               

               
Cow position:
               
chr1:29671738-29671506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
51, 80
               

               
Conread position:
               
174-416
               

               
Cow position:
               
chr1:666146-666385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
92, 67
               

               
Conread position:
               
174-416
               

               
Cow position:
               
chr1:43380243-43380005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
37, 139
               

               
Conread position:
               
174-416
               

               
Cow position:
               
chr1:43448037-43447809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
148, 60
               

               
Conread position:
               
174-417
               

               
Cow position:
               
chr1:33811720-33811950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
163, 45
               

               
Conread position:
               
174-420
               

               
Cow position:
               
chr1:71946585-71946347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
162, 50
               

               
Conread position:
               
174-424
               

               
Cow position:
               
chr1:95050314-95050059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
101, 207
               

               
Conread position:
               
174-429
               

               
Cow position:
               
chr1:57635252-57635494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
174-429
               

               
Cow position:
               
chr1:100512381-100512639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
106, 199
               

               
Conread position:
               
174-441
               

               
Cow position:
               
chr1:99136645-99136386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
165, 112
               

               
Conread position:
               
174-476
               

               
Cow position:
               
chr1:92963184-92963474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
165, 113
               

               
Conread position:
               
174-479
               

               
Cow position:
               
chr1:101551243-101551545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
62, 146
               

               
Conread position:
               
174-480
               

               
Cow position:
               
chr1:26729513-26729796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
163, 73
               

               
Conread position:
               
174-480
               

               
Cow position:
               
chr1:89485370-89485663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
11, 54
               

               
Conread position:
               
174-485
               

               
Cow position:
               
chr1:68951417-68951713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
163, 59
               

               
Conread position:
               
174-485
               

               
Cow position:
               
chr1:85596730-85597026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
108, 45
               

               
Conread position:
               
174-486
               

               
Cow position:
               
chr1:96478481-96478789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
110, 66
               

               
Conread position:
               
174-488
               

               
Cow position:
               
chr1:4374553-4374246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
134, 88
               

               
Conread position:
               
174-488
               

               
Cow position:
               
chr1:40599834-40600136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
174-488
               

               
Cow position:
               
chr1:81563519-81563836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
53, 20
               

               
Conread position:
               
174-494
               

               
Cow position:
               
chr1:68845700-68845393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 136
               

               
Conread position:
               
174-494
               

               
Cow position:
               
chr1:90640810-90641125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
53, 196
               

               
Conread position:
               
174-495
               

               
Cow position:
               
chr1:26943097-26943406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
162, 54
               

               
Conread position:
               
174-495
               

               
Cow position:
               
chr1:91800820-91800500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
55, 116
               

               
Conread position:
               
174-504
               

               
Cow position:
               
chr1:74956238-74955913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
62, 103
               

               
Conread position:
               
174-504
               

               
Cow position:
               
chr1:81355918-81355596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 76
               

               
Conread position:
               
174-507
               

               
Cow position:
               
chr1:7350324-7350658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
55, 115
               

               
Conread position:
               
174-507
               

               
Cow position:
               
chr1:70380360-70380033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
130, 104
               

               
Conread position:
               
174-507
               

               
Cow position:
               
chr1:88652416-88652746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
134, 101
               

               
Conread position:
               
174-507
               

               
Cow position:
               
chr1:102784746-102785063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
51, 79
               

               
Conread position:
               
174-508
               

               
Cow position:
               
chr1:43822162-43822510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
50, 211
               

               
Conread position:
               
174-508
               

               
Cow position:
               
chr1:72286264-72285957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
174-508
               

               
Cow position:
               
chr1:76470445-76470754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
99, 51
               

               
Conread position:
               
174-508
               

               
Cow position:
               
chr1:81868941-81868619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
13, 63
               

               
Conread position:
               
174-510
               

               
Cow position:
               
chr1:44125854-44125525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
161, 55
               

               
Conread position:
               
174-511
               

               
Cow position:
               
chr1:42874161-42873836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
163, 101
               

               
Conread position:
               
174-511
               

               
Cow position:
               
chr1:61735653-61735321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
51, 166
               

               
Conread position:
               
174-511
               

               
Cow position:
               
chr1:64678483-64678808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
54, 117
               

               
Conread position:
               
174-514
               

               
Cow position:
               
chr1:89349763-89350082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
203, 54
               

               
Conread position:
               
174-515
               

               
Cow position:
               
chr1:98577263-98577637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
134, 101
               

               
Conread position:
               
174-516
               

               
Cow position:
               
chr1:72141350-72141692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
111, 57
               

               
Conread position:
               
174-520
               

               
Cow position:
               
chr1:95176721-95177060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
58, 101
               

               
Conread position:
               
174-520
               

               
Cow position:
               
chr1:98594356-98594688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
101, 79
               

               
Conread position:
               
174-520
               

               
Cow position:
               
chr1:100551756-100552098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
234, 69
               

               
Conread position:
               
174-521
               

               
Cow position:
               
chr1:42138652-42138982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
74, 95
               

               
Conread position:
               
174-521
               

               
Cow position:
               
chr1:81913366-81913031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
62, 101
               

               
Conread position:
               
174-525
               

               
Cow position:
               
chr1:28176785-28177132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
55, 190
               

               
Conread position:
               
174-525
               

               
Cow position:
               
chr1:56229040-56229367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
162, 73
               

               
Conread position:
               
174-525
               

               
Cow position:
               
chr1:83583152-83582805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
63, 115
               

               
Conread position:
               
174-526
               

               
Cow position:
               
chr1:11226460-11226119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
65, 105
               

               
Conread position:
               
174-526
               

               
Cow position:
               
chr1:25281890-25281528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
63, 59
               

               
Conread position:
               
174-526
               

               
Cow position:
               
chr1:42360052-42360417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
57, 166
               

               
Conread position:
               
174-526
               

               
Cow position:
               
chr1:74822237-74822580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
51, 108
               

               
Conread position:
               
174-529
               

               
Cow position:
               
chr1:4290944-4291298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 195
               

               
Conread position:
               
174-530
               

               
Cow position:
               
chr1:73960487-73960833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
55, 116
               

               
Conread position:
               
174-532
               

               
Cow position:
               
chr1:80988132-80988481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 130
               

               
Conread position:
               
174-532
               

               
Cow position:
               
chr1:84255540-84255902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 140
               

               
Conread position:
               
174-533
               

               
Cow position:
               
chr1:4032420-4032770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 50
               

               
Conread position:
               
174-533
               

               
Cow position:
               
chr1:48731042-48730697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
54, 13
               

               
Conread position:
               
174-533
               

               
Cow position:
               
chr1:52956045-52956385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
163, 62
               

               
Conread position:
               
174-533
               

               
Cow position:
               
chr1:52994809-52995162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
52, 105
               

               
Conread position:
               
174-534
               

               
Cow position:
               
chr1:19885170-19885518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
55, 114
               

               
Conread position:
               
174-534
               

               
Cow position:
               
chr1:93043811-93044154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
55, 105
               

               
Conread position:
               
174-534
               

               
Cow position:
               
chr1:98461076-98461419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
55, 107
               

               
Conread position:
               
174-538
               

               
Cow position:
               
chr1:57900955-57900583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
45, 103
               

               
Conread position:
               
174-539
               

               
Cow position:
               
chr1:7971216-7971552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
164, 55
               

               
Conread position:
               
174-539
               

               
Cow position:
               
chr1:21460653-21461013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
101, 73
               

               
Conread position:
               
174-539
               

               
Cow position:
               
chr1:68253377-68253737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
76, 57
               

               
Conread position:
               
174-541
               

               
Cow position:
               
chr1:39418333-39417972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
165, 53
               

               
Conread position:
               
174-542
               

               
Cow position:
               
chr1:36874801-36875171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
163, 23
               

               
Conread position:
               
174-542
               

               
Cow position:
               
chr1:57305618-57305959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
101, 130
               

               
Conread position:
               
174-543
               

               
Cow position:
               
chr1:24729054-24728694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
53, 39
               

               
Conread position:
               
174-543
               

               
Cow position:
               
chr1:85361641-85361997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
62, 137
               

               
Conread position:
               
174-550
               

               
Cow position:
               
chr1:94212019-94212377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
174-551
               

               
Cow position:
               
chr1:95035570-95035199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
79, 131
               

               
Conread position:
               
174-557
               

               
Cow position:
               
chr1:20002450-20002071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 69
               

               
Conread position:
               
174-560
               

               
Cow position:
               
chr1:11914092-11913714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
250, 101
               

               
Conread position:
               
174-560
               

               
Cow position:
               
chr1:52039422-52039793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 101
               

               
Conread position:
               
174-563
               

               
Cow position:
               
chr1:7186573-7186953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 171
               

               
Conread position:
               
174-565
               

               
Cow position:
               
chr1:52753380-52752993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 157
               

               
Conread position:
               
174-566
               

               
Cow position:
               
chr1:36997978-36998349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
101, 158
               

               
Conread position:
               
174-567
               

               
Cow position:
               
chr1:1991639-1991258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
55, 105
               

               
Conread position:
               
174-567
               

               
Cow position:
               
chr1:10778359-10778725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
165, 55
               

               
Conread position:
               
174-567
               

               
Cow position:
               
chr1:21577590-21577976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
95, 118
               

               
Conread position:
               
174-567
               

               
Cow position:
               
chr1:22730547-22730900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
174-567
               

               
Cow position:
               
chr1:51445665-51446050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 101
               

               
Conread position:
               
174-567
               

               
Cow position:
               
chr1:53520692-53521081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 165
               

               
Conread position:
               
174-567
               

               
Cow position:
               
chr1:55229770-55230140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
174-567
               

               
Cow position:
               
chr1:69695223-69694831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
36, 199
               

               
Conread position:
               
174-567
               

               
Cow position:
               
chr1:94226762-94226377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
336, 73
               

               
Conread position:
               
174-569
               

               
Cow position:
               
chr1:41056470-41056849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
174-569
               

               
Cow position:
               
chr1:41696840-41697222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
55, 117
               

               
Conread position:
               
174-569
               

               
Cow position:
               
chr1:98030700-98031086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
64, 105
               

               
Conread position:
               
174-570
               

               
Cow position:
               
chr1:1877813-1878193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
76, 115
               

               
Conread position:
               
174-570
               

               
Cow position:
               
chr1:10632839-10633211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
143, 61
               

               
Conread position:
               
174-570
               

               
Cow position:
               
chr1:50931183-50930810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
163, 41
               

               
Conread position:
               
174-571
               

               
Cow position:
               
chr1:43358229-43357835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 179
               

               
Conread position:
               
174-573
               

               
Cow position:
               
chr1:1185525-1185903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
56, 134
               

               
Conread position:
               
174-573
               

               
Cow position:
               
chr1:21508173-21508569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
20, 139
               

               
Conread position:
               
174-573
               

               
Cow position:
               
chr1:45020018-45019633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
34, 56
               

               
Conread position:
               
174-573
               

               
Cow position:
               
chr1:53369852-53370259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 158
               

               
Conread position:
               
174-573
               

               
Cow position:
               
chr1:68619150-68618762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
63, 13
               

               
Conread position:
               
174-573
               

               
Cow position:
               
chr1:69678540-69678151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
51, 116
               

               
Conread position:
               
174-573
               

               
Cow position:
               
chr1:70297057-70297455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
53, 138
               

               
Conread position:
               
174-573
               

               
Cow position:
               
chr1:75744646-75745036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 99
               

               
Conread position:
               
174-573
               

               
Cow position:
               
chr1:84812151-84811768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
60, 108
               

               
Conread position:
               
174-573
               

               
Cow position:
               
chr1:86113627-86113223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 41
               

               
Conread position:
               
174-573
               

               
Cow position:
               
chr1:93528476-93528867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
65, 188
               

               
Conread position:
               
174-574
               

               
Cow position:
               
chr1:31348655-31348261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 97
               

               
Conread position:
               
174-574
               

               
Cow position:
               
chr1:52496567-52496947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 0
               

               
Conread position:
               
174-574
               

               
Cow position:
               
chr1:71691600-71691997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
57, 134
               

               
Conread position:
               
174-574
               

               
Cow position:
               
chr1:91816988-91816594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 133
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr1:8408-8793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr1:3429723-3429339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
11, 66
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr1:6166038-6166407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
157, 50
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr1:6941251-6941641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
163, 104
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr1:6958664-6959054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
163, 104
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr1:7442770-7443157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
163, 76
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr1:8287828-8287455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr1:10655263-10655652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
52, 188
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr1:10942306-10941923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 73
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr1:10964080-10964463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 73
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr1:13413812-13414200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
52, 97
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr1:13637885-13637490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
131, 62
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr1:15547254-15547640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
144, 190
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr1:16767299-16766911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
55, 114
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr1:21954432-21954052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
192, 120
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr1:22728833-22729230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
55, 105
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr1:24597438-24597828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
68, 137
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr1:26201006-26201410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 103
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr1:26896039-26895637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 68
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr1:31934299-31934679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
43, 74
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr1:35162189-35162580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
58, 145
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr1:38278260-38277851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 191
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr1:42968532-42968141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 134
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr1:43352865-43352478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 26
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr1:43389262-43388879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 85
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr1:43505309-43505699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
69, 50
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr1:44506754-44507143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
165, 11
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr1:46693870-46693476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 14
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr1:47658139-47658523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 64
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr1:48105648-48105250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 101
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr1:48444397-48444016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
163, 45
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr1:49433479-49433086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 79
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr1:53374221-53374605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 62
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr1:53622750-53623129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
164, 7
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr1:54207033-54206644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr1:54258353-54258744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 55
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr1:55705468-55705072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
55, 117
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr1:56225261-56225644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 62
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr1:60986757-60987167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
119, 64
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr1:62964065-62964443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr1:63390988-63390589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 183
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr1:64804322-64803922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 201
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr1:68217573-68217188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 112
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr1:74084406-74084013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 30
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr1:77620336-77620724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
43, 52
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr1:79165305-79164907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
48, 118
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr1:79590886-79591279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 170
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr1:81228554-81228160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
283, 156
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr1:81569249-81568854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
53, 115
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr1:82861560-82861983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
55, 276
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr1:83982591-83982201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
8, 166
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr1:89510147-89509753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
63, 122
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr1:89937575-89937203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
57, 135
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr1:90864514-90864116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 170
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr1:96964106-96964494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr1:98551499-98551913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
75, 29
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr1:99609151-99609542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 115
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr1:101713903-101714291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
50, 116
               

               
Conread position:
               
175-301
               

               
Cow position:
               
chr1:54484854-54484980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
54, 91
               

               
Conread position:
               
175-324
               

               
Cow position:
               
chr1:3757739-3757890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
175-337
               

               
Cow position:
               
chr1:54732671-54732521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
175-358
               

               
Cow position:
               
chr1:15311655-15311840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
61, 99
               

               
Conread position:
               
175-480
               

               
Cow position:
               
chr1:98310847-98311155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
10, 166
               

               
Conread position:
               
175-487
               

               
Cow position:
               
chr1:20384834-20384533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
61, 101
               

               
Conread position:
               
175-511
               

               
Cow position:
               
chr1:64251265-64250938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
162, 100
               

               
Conread position:
               
175-511
               

               
Cow position:
               
chr1:97954662-97954354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
37, 59
               

               
Conread position:
               
175-525
               

               
Cow position:
               
chr1:61175970-61176306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
71, 132
               

               
Conread position:
               
175-526
               

               
Cow position:
               
chr1:98360622-98360275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
50, 188
               

               
Conread position:
               
175-533
               

               
Cow position:
               
chr1:82884603-82884259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
182, 100
               

               
Conread position:
               
175-538
               

               
Cow position:
               
chr1:89742225-89741852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
46, 127
               

               
Conread position:
               
175-539
               

               
Cow position:
               
chr1:53308606-53308256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
59, 97
               

               
Conread position:
               
175-539
               

               
Cow position:
               
chr1:89835020-89835399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
18, 52
               

               
Conread position:
               
175-559
               

               
Cow position:
               
chr1:874430-874816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 35
               

               
Conread position:
               
175-572
               

               
Cow position:
               
chr1:4539652-4539247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
45, 143
               

               
Conread position:
               
175-575
               

               
Cow position:
               
chr1:63596273-63595876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 190
               

               
Conread position:
               
175-575
               

               
Cow position:
               
chr1:78809670-78810058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 72
               

               
Conread position:
               
175-575
               

               
Cow position:
               
chr1:100400415-100400029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 189
               

               
Conread position:
               
176-337
               

               
Cow position:
               
chr1:30504258-30504418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
72, 100
               

               
Conread position:
               
176-337
               

               
Cow position:
               
chr1:31414171-31414014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
176-337
               

               
Cow position:
               
chr1:39702618-39702768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
176-351
               

               
Cow position:
               
chr1:89395380-89395565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
176-358
               

               
Cow position:
               
chr1:70534146-70533970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
117, 125
               

               
Conread position:
               
176-358
               

               
Cow position:
               
chr1:80764747-80764567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
176-358
               

               
Cow position:
               
chr1:95215398-95215210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
49, 114
               

               
Conread position:
               
176-362
               

               
Cow position:
               
chr1:11873569-11873387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
162, 71
               

               
Conread position:
               
176-362
               

               
Cow position:
               
chr1:35170124-35170309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
82, 124
               

               
Conread position:
               
176-362
               

               
Cow position:
               
chr1:81180192-81179997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
176-364
               

               
Cow position:
               
chr1:46940074-46939881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
55, 130
               

               
Conread position:
               
176-364
               

               
Cow position:
               
chr1:102826026-102825841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
161, 59
               

               
Conread position:
               
176-371
               

               
Cow position:
               
chr1:3244638-3244830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
36, 102
               

               
Conread position:
               
176-371
               

               
Cow position:
               
chr1:25793651-25793452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
49, 103
               

               
Conread position:
               
176-374
               

               
Cow position:
               
chr1:34685982-34686176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
155, 99
               

               
Conread position:
               
176-374
               

               
Cow position:
               
chr1:71045542-71045741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
161, 110
               

               
Conread position:
               
176-375
               

               
Cow position:
               
chr1:31348122-31347934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
176-376
               

               
Cow position:
               
chr1:5409826-5409627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
157, 73
               

               
Conread position:
               
176-376
               

               
Cow position:
               
chr1:33701908-33702106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
161, 59
               

               
Conread position:
               
176-377
               

               
Cow position:
               
chr1:21572831-21573042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
53, 188
               

               
Conread position:
               
176-386
               

               
Cow position:
               
chr1:11020823-11021025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
176-392
               

               
Cow position:
               
chr1:43285420-43285201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
53, 105
               

               
Conread position:
               
176-401
               

               
Cow position:
               
chr1:49131334-49131100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
56, 99
               

               
Conread position:
               
176-407
               

               
Cow position:
               
chr1:5873184-5872957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
162, 102
               

               
Conread position:
               
176-416
               

               
Cow position:
               
chr1:47008818-47009052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
66, 103
               

               
Conread position:
               
176-417
               

               
Cow position:
               
chr1:56748377-56748621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
53, 103
               

               
Conread position:
               
176-417
               

               
Cow position:
               
chr1:76222903-76222668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
159, 126
               

               
Conread position:
               
176-491
               

               
Cow position:
               
chr1:95687318-95687001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
60, 116
               

               
Conread position:
               
176-493
               

               
Cow position:
               
chr1:51531561-51531847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
176-495
               

               
Cow position:
               
chr1:56634886-56635196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
161, 73
               

               
Conread position:
               
176-507
               

               
Cow position:
               
chr1:26702420-26702097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
161, 86
               

               
Conread position:
               
176-507
               

               
Cow position:
               
chr1:46218371-46218683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
176-508
               

               
Cow position:
               
chr1:36931947-36932265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
161, 64
               

               
Conread position:
               
176-513
               

               
Cow position:
               
chr1:80899895-80900235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
53, 188
               

               
Conread position:
               
176-518
               

               
Cow position:
               
chr1:49795792-49796113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
49, 71
               

               
Conread position:
               
176-520
               

               
Cow position:
               
chr1:8349523-8349201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
161, 60
               

               
Conread position:
               
176-520
               

               
Cow position:
               
chr1:34159619-34159959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 189
               

               
Conread position:
               
176-520
               

               
Cow position:
               
chr1:69264609-69264931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
161, 50
               

               
Conread position:
               
176-531
               

               
Cow position:
               
chr1:3962896-3962554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
157, 43
               

               
Conread position:
               
176-532
               

               
Cow position:
               
chr1:97778783-97779126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
56, 20
               

               
Conread position:
               
176-537
               

               
Cow position:
               
chr1:85593560-85593914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
36, 51
               

               
Conread position:
               
176-538
               

               
Cow position:
               
chr1:83747727-83748084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
31, 117
               

               
Conread position:
               
176-538
               

               
Cow position:
               
chr1:90868648-90868306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
161, 38
               

               
Conread position:
               
176-542
               

               
Cow position:
               
chr1:102349970-102349607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
43, 77
               

               
Conread position:
               
176-549
               

               
Cow position:
               
chr1:89342205-89341832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
158, 60
               

               
Conread position:
               
176-563
               

               
Cow position:
               
chr1:60032811-60032436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
160, 99
               

               
Conread position:
               
176-567
               

               
Cow position:
               
chr1:12222817-12222437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
256, 112
               

               
Conread position:
               
176-567
               

               
Cow position:
               
chr1:27145866-27145477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
48, 114
               

               
Conread position:
               
176-570
               

               
Cow position:
               
chr1:4691380-4691758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
45, 27
               

               
Conread position:
               
176-570
               

               
Cow position:
               
chr1:37322217-37321841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
29, 113
               

               
Conread position:
               
176-573
               

               
Cow position:
               
chr1:70422088-70422480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 116
               

               
Conread position:
               
176-575
               

               
Cow position:
               
chr1:11728965-11729346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
49, 103
               

               
Conread position:
               
176-575
               

               
Cow position:
               
chr1:11853902-11853511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
50, 117
               

               
Conread position:
               
176-575
               

               
Cow position:
               
chr1:16962226-16961819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
53, 116
               

               
Conread position:
               
176-575
               

               
Cow position:
               
chr1:27358731-27359115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
59, 135
               

               
Conread position:
               
176-575
               

               
Cow position:
               
chr1:36880066-36880462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
85, 72
               

               
Conread position:
               
176-575
               

               
Cow position:
               
chr1:51628714-51628333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
59, 133
               

               
Conread position:
               
176-575
               

               
Cow position:
               
chr1:55357498-55357114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
161, 95
               

               
Conread position:
               
176-575
               

               
Cow position:
               
chr1:61884703-61885087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
56, 113
               

               
Conread position:
               
176-575
               

               
Cow position:
               
chr1:66138104-66138497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
56, 82
               

               
Conread position:
               
176-575
               

               
Cow position:
               
chr1:70227914-70227516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
50, 121
               

               
Conread position:
               
176-575
               

               
Cow position:
               
chr1:82337996-82337606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
53, 18
               

               
Conread position:
               
176-575
               

               
Cow position:
               
chr1:97820473-97820858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
61, 115
               

               
Conread position:
               
176-575
               

               
Cow position:
               
chr1:99642582-99642194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
45, 114
               

               
Conread position:
               
177-354
               

               
Cow position:
               
chr1:23969248-23969071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
38, 71
               

               
Conread position:
               
177-361
               

               
Cow position:
               
chr1:93110833-93110647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
127, 109
               

               
Conread position:
               
177-395
               

               
Cow position:
               
chr1:99095152-99095369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
62, 37
               

               
Conread position:
               
177-416
               

               
Cow position:
               
chr1:73561861-73561628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
98, 190
               

               
Conread position:
               
177-508
               

               
Cow position:
               
chr1:85028748-85029065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
156, 78
               

               
Conread position:
               
177-529
               

               
Cow position:
               
chr1:100800144-100800483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
71, 99
               

               
Conread position:
               
177-538
               

               
Cow position:
               
chr1:85162759-85162406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
60, 112
               

               
Conread position:
               
177-575
               

               
Cow position:
               
chr1:43872543-43872134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
48, 14
               

               
Conread position:
               
178-374
               

               
Cow position:
               
chr1:87888192-87888386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
159, 65
               

               
Conread position:
               
178-560
               

               
Cow position:
               
chr1:29935592-29935229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
58, 104
               

               
Conread position:
               
178-563
               

               
Cow position:
               
chr1:51769875-51770258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 28
               

               
Conread position:
               
178-573
               

               
Cow position:
               
chr1:42256720-42256330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
22, 104
               

               
Conread position:
               
178-573
               

               
Cow position:
               
chr1:70538393-70538779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
46, 111
               

               
Conread position:
               
178-575
               

               
Cow position:
               
chr1:26179025-26178633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
51, 158
               

               
Conread position:
               
178-575
               

               
Cow position:
               
chr1:51394209-51394593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
18, 74
               

               
Conread position:
               
178-575
               

               
Cow position:
               
chr1:99512463-99512087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
255, 110
               

               
Conread position:
               
179-337
               

               
Cow position:
               
chr1:75382782-75382941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
44, 129
               

               
Conread position:
               
179-361
               

               
Cow position:
               
chr1:52506754-52506581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
152, 49
               

               
Conread position:
               
179-373
               

               
Cow position:
               
chr1:342354-342155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
75, 112
               

               
Conread position:
               
179-374
               

               
Cow position:
               
chr1:95100752-95100942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
63, 97
               

               
Conread position:
               
179-374
               

               
Cow position:
               
chr1:95654925-95654727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
50, 112
               

               
Conread position:
               
179-377
               

               
Cow position:
               
chr1:51818732-51818931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
157, 57
               

               
Conread position:
               
179-416
               

               
Cow position:
               
chr1:28068139-28068372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
152, 109
               

               
Conread position:
               
179-417
               

               
Cow position:
               
chr1:41954463-41954221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
83, 195
               

               
Conread position:
               
179-483
               

               
Cow position:
               
chr1:71257692-71257380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
69, 113
               

               
Conread position:
               
179-494
               

               
Cow position:
               
chr1:47543462-47543766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
179-494
               

               
Cow position:
               
chr1:57946096-57945776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
50, 98
               

               
Conread position:
               
179-495
               

               
Cow position:
               
chr1:53424978-53425275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
160, 40
               

               
Conread position:
               
179-502
               

               
Cow position:
               
chr1:62291895-62291596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
179-508
               

               
Cow position:
               
chr1:54478115-54478440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
156, 96
               

               
Conread position:
               
179-536
               

               
Cow position:
               
chr1:71643873-71643521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
57, 113
               

               
Conread position:
               
179-568
               

               
Cow position:
               
chr1:22836193-22836572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
217, 68
               

               
Conread position:
               
179-573
               

               
Cow position:
               
chr1:84282855-84283249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
50, 117
               

               
Conread position:
               
179-575
               

               
Cow position:
               
chr1:679821-679430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
50, 113
               

               
Conread position:
               
179-575
               

               
Cow position:
               
chr1:4401938-4402323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
157, 30
               

               
Conread position:
               
179-575
               

               
Cow position:
               
chr1:74929929-74929533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
48, 115
               

               
Conread position:
               
180-362
               

               
Cow position:
               
chr1:44164870-44165057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
49, 110
               

               
Conread position:
               
180-369
               

               
Cow position:
               
chr1:58419724-58419920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
55, 99
               

               
Conread position:
               
180-374
               

               
Cow position:
               
chr1:3340729-3340920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
54, 110
               

               
Conread position:
               
180-495
               

               
Cow position:
               
chr1:42555061-42555364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
157, 39
               

               
Conread position:
               
180-519
               

               
Cow position:
               
chr1:100393373-100393039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
49, 98
               

               
Conread position:
               
180-521
               

               
Cow position:
               
chr1:60707195-60707527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
54, 130
               

               
Conread position:
               
180-526
               

               
Cow position:
               
chr1:56477386-56477721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
144, 47
               

               
Conread position:
               
180-573
               

               
Cow position:
               
chr1:197216-196833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
45, 99
               

               
Conread position:
               
180-575
               

               
Cow position:
               
chr1:35491787-35491396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
45, 109
               

               
Conread position:
               
180-575
               

               
Cow position:
               
chr1:37707177-37706791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
49, 111
               

               
Conread position:
               
180-575
               

               
Cow position:
               
chr1:86482695-86483082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
49, 18
               

               
Conread position:
               
180-575
               

               
Cow position:
               
chr1:88926588-88926204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
95, 64
               

               
Conread position:
               
181-507
               

               
Cow position:
               
chr1:100450392-100450066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
74, 176
               

               
Conread position:
               
181-541
               

               
Cow position:
               
chr1:62036593-62036947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
113, 68
               

               
Conread position:
               
181-570
               

               
Cow position:
               
chr1:12464871-12464496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
127, 55
               

               
Conread position:
               
181-575
               

               
Cow position:
               
chr1:38753713-38754092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
10, 23
               

               
Conread position:
               
181-575
               

               
Cow position:
               
chr1:102105527-102105912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
196, 71
               

               
Conread position:
               
182-402
               

               
Cow position:
               
chr1:41004574-41004355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
40, 98
               

               
Conread position:
               
183-372
               

               
Cow position:
               
chr1:47884038-47883833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
46, 198
               

               
Conread position:
               
183-410
               

               
Cow position:
               
chr1:32013751-32013967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
70, 53
               

               
Conread position:
               
183-504
               

               
Cow position:
               
chr1:4414413-4414102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
156, 95
               

               
Conread position:
               
183-504
               

               
Cow position:
               
chr1:75141801-75142104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
156, 35
               

               
Conread position:
               
183-575
               

               
Cow position:
               
chr1:6867686-6867287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
45, 143
               

               
Conread position:
               
183-575
               

               
Cow position:
               
chr1:96305174-96304797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
14, 51
               

               
Conread position:
               
185-575
               

               
Cow position:
               
chr1:63435013-63434623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
44, 96
               

               
Conread position:
               
185-575
               

               
Cow position:
               
chr1:72103643-72104029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 147
               

               
Conread position:
               
186-362
               

               
Cow position:
               
chr1:46030555-46030381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
150, 43
               

               
Conread position:
               
186-575
               

               
Cow position:
               
chr1:28563771-28563386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
324, 144
               

               
Conread position:
               
186-575
               

               
Cow position:
               
chr1:63138636-63139019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 154
               

               
Conread position:
               
187-329
               

               
Cow position:
               
chr1:55686422-55686278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
45, 104
               

               
Conread position:
               
187-370
               

               
Cow position:
               
chr1:43340824-43340633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
42, 178
               

               
Conread position:
               
188-355
               

               
Cow position:
               
chr1:49753730-49753896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
145, 87
               

               
Conread position:
               
188-575
               

               
Cow position:
               
chr1:15333677-15334063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 85
               

               
Conread position:
               
189-374
               

               
Cow position:
               
chr1:81470929-81471120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
46, 100
               

               
Conread position:
               
189-571
               

               
Cow position:
               
chr1:24542781-24542398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
45, 62
               

               
Conread position:
               
189-575
               

               
Cow position:
               
chr1:84906267-84905885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 115
               

               
Conread position:
               
190-361
               

               
Cow position:
               
chr1:18697551-18697373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
190-469
               

               
Cow position:
               
chr1:51654212-51654496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
147, 85
               

               
Conread position:
               
191-436
               

               
Cow position:
               
chr1:64421133-64421371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
38, 101
               

               
Conread position:
               
192-575
               

               
Cow position:
               
chr1:40192874-40192528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
328, 27
               

               
Conread position:
               
193-481
               

               
Cow position:
               
chr1:6788485-6788199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
36, 96
               

               
Conread position:
               
193-494
               

               
Cow position:
               
chr1:7713765-7714064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
120, 95
               

               
Conread position:
               
193-574
               

               
Cow position:
               
chr1:70343844-70344221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
27, 96
               

               
Conread position:
               
193-575
               

               
Cow position:
               
chr1:1499896-1499515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
82, 40
               

               
Conread position:
               
194-417
               

               
Cow position:
               
chr1:82443651-82443434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
142, 77
               

               
Conread position:
               
194-500
               

               
Cow position:
               
chr1:20806124-20806428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
54, 156
               

               
Conread position:
               
194-534
               

               
Cow position:
               
chr1:32001515-32001182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
144, 61
               

               
Conread position:
               
195-575
               

               
Cow position:
               
chr1:49082529-49082921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
34, 184
               

               
Conread position:
               
196-351
               

               
Cow position:
               
chr1:83594000-83593839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
196-389
               

               
Cow position:
               
chr1:102113301-102113106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
41, 86
               

               
Conread position:
               
196-575
               

               
Cow position:
               
chr1:83072251-83072617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
140, 79
               

               
Conread position:
               
197-533
               

               
Cow position:
               
chr1:33331280-33330957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
40, 92
               

               
Conread position:
               
197-558
               

               
Cow position:
               
chr1:25734662-25735029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
35, 146
               

               
Conread position:
               
197-575
               

               
Cow position:
               
chr1:73546098-73545733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
32, 95
               

               
Conread position:
               
198-575
               

               
Cow position:
               
chr1:42398387-42398021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 166
               

               
Conread position:
               
199-495
               

               
Cow position:
               
chr1:43703225-43703507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
138, 20
               

               
Conread position:
               
199-542
               

               
Cow position:
               
chr1:51417588-51417914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
137, 18
               

               
Conread position:
               
199-575
               

               
Cow position:
               
chr1:33207064-33206699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
30, 80
               

               
Conread position:
               
199-575
               

               
Cow position:
               
chr1:54156930-54156559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
32, 172
               

               
Conread position:
               
199-575
               

               
Cow position:
               
chr1:57880982-57880606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
33, 163
               

               
Conread position:
               
200-391
               

               
Cow position:
               
chr1:101007808-101007618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
136, 44
               

               
Conread position:
               
200-573
               

               
Cow position:
               
chr1:71227888-71228268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 179
               

               
Conread position:
               
202-377
               

               
Cow position:
               
chr1:89082921-89083101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
35, 76
               

               
Conread position:
               
202-533
               

               
Cow position:
               
chr1:92369542-92369870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
35, 77
               

               
Conread position:
               
204-361
               

               
Cow position:
               
chr1:3243754-3243912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
102, 40
               

               
Conread position:
               
204-440
               

               
Cow position:
               
chr1:99039537-99039312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
133, 74
               

               
Conread position:
               
204-533
               

               
Cow position:
               
chr1:75933088-75933405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
133, 82
               

               
Conread position:
               
204-560
               

               
Cow position:
               
chr1:68763866-68763524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
134, 83
               

               
Conread position:
               
204-570
               

               
Cow position:
               
chr1:484650-484293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 43
               

               
Conread position:
               
204-575
               

               
Cow position:
               
chr1:86578764-86579147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
33, 83
               

               
Conread position:
               
206-575
               

               
Cow position:
               
chr1:65905190-65904820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
36, 148
               

               
Conread position:
               
209-567
               

               
Cow position:
               
chr1:101268183-101267835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
130, 35
               

               
Conread position:
               
210-574
               

               
Cow position:
               
chr1:20667920-20667574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
127, 65
               

               
Conread position:
               
211-374
               

               
Cow position:
               
chr1:32596276-32596443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
60, 149
               

               
Conread position:
               
211-539
               

               
Cow position:
               
chr1:57297301-57297625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
64, 33
               

               
Conread position:
               
213-508
               

               
Cow position:
               
chr1:42545959-42545668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
124, 34
               

               
Conread position:
               
213-528
               

               
Cow position:
               
chr1:24581409-24581707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
121, 11
               

               
Conread position:
               
214-575
               

               
Cow position:
               
chr1:90621689-90621331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
15, 76
               

               
Conread position:
               
216-520
               

               
Cow position:
               
chr1:24876093-24876385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
120, 90
               

               
Conread position:
               
216-573
               

               
Cow position:
               
chr1:49317669-49317328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
121, 55
               

               
Conread position:
               
218-528
               

               
Cow position:
               
chr1:101632509-101632205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
121, 68
               

               
Conread position:
               
218-575
               

               
Cow position:
               
chr1:87095400-87095036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 6
               

               
Conread position:
               
219-498
               

               
Cow position:
               
chr1:95178786-95179055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
117, 25
               

               
Conread position:
               
219-511
               

               
Cow position:
               
chr1:12978512-12978796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
116, 5
               

               
Conread position:
               
219-573
               

               
Cow position:
               
chr1:31608063-31607713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 28
               

               
Conread position:
               
219-573
               

               
Cow position:
               
chr1:59518751-59519084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
118, 59
               

               
Conread position:
               
219-575
               

               
Cow position:
               
chr1:16061188-16060833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
63, 34
               

               
Conread position:
               
219-575
               

               
Cow position:
               
chr1:55429124-55428778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 5
               

               
Conread position:
               
219-575
               

               
Cow position:
               
chr1:89388167-89388518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
70, 5
               

               
Conread position:
               
220-539
               

               
Cow position:
               
chr1:77880899-77880593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
119, 27
               

               
Conread position:
               
224-532
               

               
Cow position:
               
chr1:44075870-44075584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
224-534
               

               
Cow position:
               
chr1:74927716-74928021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
51, 87
               

               
Conread position:
               
224-573
               

               
Cow position:
               
chr1:7748053-7748391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
51, 133
               

               
Conread position:
               
224-573
               

               
Cow position:
               
chr1:7752219-7752555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
51, 133
               

               
Conread position:
               
224-575
               

               
Cow position:
               
chr1:19568688-19569030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
115, 50
               

               
Conread position:
               
224-575
               

               
Cow position:
               
chr1:25386887-25387223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
59, 20
               

               
Conread position:
               
224-575
               

               
Cow position:
               
chr1:86110896-86110567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
13, 63
               

               
Conread position:
               
224-575
               

               
Cow position:
               
chr1:92580600-92580934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
59, 14
               

               
Conread position:
               
224-575
               

               
Cow position:
               
chr1:95557872-95558215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
113, 49
               

               
Conread position:
               
225-538
               

               
Cow position:
               
chr1:86340634-86340326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
40, 11
               

               
Conread position:
               
225-567
               

               
Cow position:
               
chr1:96081320-96081648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
8, 106
               

               
Conread position:
               
225-573
               

               
Cow position:
               
chr1:19970764-19970419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
114, 63
               

               
Conread position:
               
226-530
               

               
Cow position:
               
chr1:85647944-85647649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
227-575
               

               
Cow position:
               
chr1:88913156-88913495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
25, 60
               

               
Conread position:
               
229-435
               

               
Cow position:
               
chr1:51684644-51684843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
108, 18
               

               
Conread position:
               
229-546
               

               
Cow position:
               
chr1:97696581-97696892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
63, 46
               

               
Conread position:
               
229-570
               

               
Cow position:
               
chr1:42175565-42175898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
129, 46
               

               
Conread position:
               
229-571
               

               
Cow position:
               
chr1:78096777-78097097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
289, 56
               

               
Conread position:
               
229-575
               

               
Cow position:
               
chr1:14309197-14308854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
54, 135
               

               
Conread position:
               
229-575
               

               
Cow position:
               
chr1:101866656-101866325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
58, 32
               

               
Conread position:
               
230-532
               

               
Cow position:
               
chr1:98413608-98413905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
44, 81
               

               
Conread position:
               
231-537
               

               
Cow position:
               
chr1:93554686-93554976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
231-575
               

               
Cow position:
               
chr1:3419644-3419982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
17, 73
               

               
Conread position:
               
231-575
               

               
Cow position:
               
chr1:46036117-46035773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
52, 73
               

               
Conread position:
               
231-575
               

               
Cow position:
               
chr1:64572356-64572689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
77, 44
               

               
Conread position:
               
232-573
               

               
Cow position:
               
chr1:33409784-33409450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
51, 121
               

               
Conread position:
               
232-575
               

               
Cow position:
               
chr1:22192607-22192945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
232-575
               

               
Cow position:
               
chr1:70428562-70428912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
79, 38
               

               
Conread position:
               
233-575
               

               
Cow position:
               
chr1:98453430-98453770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
103, 55
               

               
Conread position:
               
236-573
               

               
Cow position:
               
chr1:76740836-76740499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
39, 133
               

               
Conread position:
               
236-573
               

               
Cow position:
               
chr1:86682715-86682394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
77, 49
               

               
Conread position:
               
236-575
               

               
Cow position:
               
chr1:62519205-62519541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 52
               

               
Conread position:
               
236-575
               

               
Cow position:
               
chr1:76613284-76612957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
39, 97
               

               
Conread position:
               
236-575
               

               
Cow position:
               
chr1:87197675-87197995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
237-362
               

               
Cow position:
               
chr1:65909375-65909502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
100, 38
               

               
Conread position:
               
237-539
               

               
Cow position:
               
chr1:57420879-57420594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
102, 50
               

               
Conread position:
               
237-566
               

               
Cow position:
               
chr1:23186948-23186636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
47, 75
               

               
Conread position:
               
239-532
               

               
Cow position:
               
chr1:23512804-23512524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
120, 39
               

               
Conread position:
               
239-573
               

               
Cow position:
               
chr1:65318426-65318750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 71
               

               
Conread position:
               
241-573
               

               
Cow position:
               
chr1:91023615-91023293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
95, 44
               

               
Conread position:
               
244-549
               

               
Cow position:
               
chr1:71305547-71305832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
39, 62
               

               
Conread position:
               
244-571
               

               
Cow position:
               
chr1:5776006-5776317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
39, 74
               

               
Conread position:
               
244-575
               

               
Cow position:
               
chr1:6228729-6228406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
95, 44
               

               
Conread position:
               
245-570
               

               
Cow position:
               
chr1:97231814-97232143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
36, 65
               

               
Conread position:
               
246-519
               

               
Cow position:
               
chr1:20732561-20732825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
29, 76
               

               
Conread position:
               
246-575
               

               
Cow position:
               
chr1:29451776-29452098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
37, 61
               

               
Conread position:
               
247-573
               

               
Cow position:
               
chr1:2976136-2975816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
90, 23
               

               
Conread position:
               
247-575
               

               
Cow position:
               
chr1:79339711-79339382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
36, 84
               

               
Conread position:
               
247-575
               

               
Cow position:
               
chr1:86057199-86056903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
248-575
               

               
Cow position:
               
chr1:79660545-79660223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
21, 7
               

               
Conread position:
               
249-543
               

               
Cow position:
               
chr1:5539417-5539130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
16, 68
               

               
Conread position:
               
249-573
               

               
Cow position:
               
chr1:92997038-92996713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
28, 61
               

               
Conread position:
               
249-575
               

               
Cow position:
               
chr1:89448758-89449073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
90, 36
               

               
Conread position:
               
250-510
               

               
Cow position:
               
chr1:89230366-89230118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
89, 35
               

               
Conread position:
               
250-536
               

               
Cow position:
               
chr1:85550216-85549941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
89, 35
               

               
Conread position:
               
250-543
               

               
Cow position:
               
chr1:97090189-97090471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
87, 35
               

               
Conread position:
               
250-573
               

               
Cow position:
               
chr1:43311913-43311595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
18, 5
               

               
Conread position:
               
250-575
               

               
Cow position:
               
chr1:47886627-47886305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
33, 142
               

               
Conread position:
               
251-575
               

               
Cow position:
               
chr1:4243480-4243155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
85, 36
               

               
Conread position:
               
253-534
               

               
Cow position:
               
chr1:86073459-86073733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
83, 35
               

               
Conread position:
               
255-567
               

               
Cow position:
               
chr1:53369072-53369371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
84, 33
               

               
Conread position:
               
256-573
               

               
Cow position:
               
chr1:101715219-101714907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
27, 97
               

               
Conread position:
               
256-575
               

               
Cow position:
               
chr1:5010972-5010658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
23, 84
               

               
Conread position:
               
256-575
               

               
Cow position:
               
chr1:35600429-35600115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
80, 5
               

               
Conread position:
               
257-573
               

               
Cow position:
               
chr1:6294629-6294321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
26, 47
               

               
Conread position:
               
263-531
               

               
Cow position:
               
chr1:100569026-100569290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
20, 102
               

               
Conread position:
               
263-534
               

               
Cow position:
               
chr1:42869061-42868805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
77, 35
               

               
Conread position:
               
263-534
               

               
Cow position:
               
chr1:72105288-72105543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
76, 6
               

               
Conread position:
               
263-567
               

               
Cow position:
               
chr1:73458219-73457927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
76, 46
               

               
Conread position:
               
263-575
               

               
Cow position:
               
chr1:24909180-24908867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
71, 92
               

               
Conread position:
               
263-575
               

               
Cow position:
               
chr1:95637704-95638010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
20, 60
               

               
Conread position:
               
264-559
               

               
Cow position:
               
chr1:72813488-72813778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
71, 105
               

               
Conread position:
               
264-575
               

               
Cow position:
               
chr1:71666066-71665759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
11, 108
               

               
Conread position:
               
264-575
               

               
Cow position:
               
chr1:84104178-84103883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
55, 23
               

               
Conread position:
               
265-575
               

               
Cow position:
               
chr1:47790787-47790493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
74, 34
               

               
Conread position:
               
266-544
               

               
Cow position:
               
chr1:80422154-80422417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
9, 75
               

               
Conread position:
               
267-533
               

               
Cow position:
               
chr1:78697893-78697637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
15, 47
               

               
Conread position:
               
269-575
               

               
Cow position:
               
chr1:77986542-77986241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
140, 19
               

               
Conread position:
               
271-575
               

               
Cow position:
               
chr1:47288121-47288419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
65, 98
               

               
Conread position:
               
271-575
               

               
Cow position:
               
chr1:71399165-71399469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
12, 43
               

               
Conread position:
               
275-539
               

               
Cow position:
               
chr1:77424987-77425245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
235, 64
               

               
Conread position:
               
275-575
               

               
Cow position:
               
chr1:635800-635509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
61, 81
               

               
Conread position:
               
276-575
               

               
Cow position:
               
chr1:37726531-37726239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
16, 32
               

               
Conread position:
               
277-538
               

               
Cow position:
               
chr1:81580062-81580318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
62, 29
               

               
Conread position:
               
277-539
               

               
Cow position:
               
chr1:5637190-5636919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
10, 80
               

               
Conread position:
               
277-575
               

               
Cow position:
               
chr1:31795116-31794831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
278-567
               

               
Cow position:
               
chr1:95296722-95296437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
58, 85
               

               
Conread position:
               
278-575
               

               
Cow position:
               
chr1:10616768-10617066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
61, 85
               

               
Conread position:
               
278-575
               

               
Cow position:
               
chr1:66898609-66898319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
108, 55
               

               
Conread position:
               
279-532
               

               
Cow position:
               
chr1:7023009-7023256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
60, 82
               

               
Conread position:
               
279-538
               

               
Cow position:
               
chr1:45553355-45553102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
55, 84
               

               
Conread position:
               
279-574
               

               
Cow position:
               
chr1:89785800-89786085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
29, 34
               

               
Conread position:
               
279-575
               

               
Cow position:
               
chr1:22944137-22943853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
60, 78
               

               
Conread position:
               
279-575
               

               
Cow position:
               
chr1:42482092-42482374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
279-575
               

               
Cow position:
               
chr1:56618762-56618481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
79, 55
               

               
Conread position:
               
280-532
               

               
Cow position:
               
chr1:92989479-92989725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
280-573
               

               
Cow position:
               
chr1:91651470-91651175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
56, 76
               

               
Conread position:
               
280-575
               

               
Cow position:
               
chr1:17196740-17196450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
59, 76
               

               
Conread position:
               
281-568
               

               
Cow position:
               
chr1:50964238-50963959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
55, 37
               

               
Conread position:
               
281-571
               

               
Cow position:
               
chr1:31841860-31841558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
55, 216
               

               
Conread position:
               
282-551
               

               
Cow position:
               
chr1:1964634-1964895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
30, 58
               

               
Conread position:
               
282-573
               

               
Cow position:
               
chr1:648216-648501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
54, 75
               

               
Conread position:
               
282-575
               

               
Cow position:
               
chr1:627853-628143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
57, 97
               

               
Conread position:
               
282-575
               

               
Cow position:
               
chr1:52618713-52619005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
40, 98
               

               
Conread position:
               
282-575
               

               
Cow position:
               
chr1:88397948-88397667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
283-567
               

               
Cow position:
               
chr1:4391390-4391101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
51, 83
               

               
Conread position:
               
288-570
               

               
Cow position:
               
chr1:71350825-71350554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
127, 46
               

               
Conread position:
               
291-570
               

               
Cow position:
               
chr1:75250013-75250282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
48, 22
               

               
Conread position:
               
291-575
               

               
Cow position:
               
chr1:22823806-22824084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
48, 15
               

               
Conread position:
               
297-573
               

               
Cow position:
               
chr1:46030866-46031136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
39, 58
               

               
Conread position:
               
305-575
               

               
Cow position:
               
chr1:33913735-33914006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
33, 121
               

               
Conread position:
               
312-531
               

               
Cow position:
               
chr1:69227528-69227310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
27, 45
               

               
Conread position:
               
312-538
               

               
Cow position:
               
chr1:95153141-95153363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
27, 66
               

               
Conread position:
               
312-575
               

               
Cow position:
               
chr1:5128365-5128630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
24, 43
               

               
Conread position:
               
312-575
               

               
Cow position:
               
chr1:53402703-53402959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
23, 45
               

               
Conread position:
               
312-575
               

               
Cow position:
               
chr1:97794627-97794375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
26, 55
               

               
Conread position:
               
313-538
               

               
Cow position:
               
chr1:8347046-8347264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
313-575
               

               
Cow position:
               
chr1:98467730-98467977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
248, 26
               

               
Conread position:
               
314-566
               

               
Cow position:
               
chr1:39681919-39682165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
25, 43
               

               
Conread position:
               
316-575
               

               
Cow position:
               
chr1:22637499-22637249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
92, 37
               

               
Conread position:
               
322-573
               

               
Cow position:
               
chr1:2971842-2972093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
15, 32
               

               
Conread position:
               
326-567
               

               
Cow position:
               
chr1:51609309-51609546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
10, 37
               

               
Conread position:
               
331-575
               

               
Cow position:
               
chr1:57089740-57089503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
333-575
               

               
Cow position:
               
chr1:52912953-52912717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
31, 20
               

               
Conread position:
               
334-528
               

               
Cow position:
               
chr1:95974341-95974530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
334-575
               

               
Cow position:
               
chr1:30035159-30035399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
59, 104
               

               
Conread position:
               
336-534
               

               
Cow position:
               
chr1:97717628-97717436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
336-575
               

               
Cow position:
               
chr1:30862463-30862237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
190, 24
               

               
Conread position:
               
336-575
               

               
Cow position:
               
chr1:79718749-79718983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
34, 62
               

               
Conread position:
               
336-575
               

               
Cow position:
               
chr1:81390865-81391097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
165, 31
               

               
Conread position:
               
337-575
               

               
Cow position:
               
chr1:56117405-56117647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
23, 40
               

               
Conread position:
               
337-575
               

               
Cow position:
               
chr1:99322620-99322392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
51, 16
               

               
Conread position:
               
338-573
               

               
Cow position:
               
chr1:71770368-71770133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
29, 39
               

               
Conread position:
               
340-571
               

               
Cow position:
               
chr1:2010306-2010079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
31, 14
               

               
Conread position:
               
341-575
               

               
Cow position:
               
chr1:60490456-60490682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
54, 26
               

               
Conread position:
               
354-575
               

               
Cow position:
               
chr1:31819071-31819278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
354-575
               

               
Cow position:
               
chr1:81858945-81858726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
17, 25
               

               
Conread position:
               
356-573
               

               
Cow position:
               
chr1:28059009-28058792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
21, 150
               

               
Conread position:
               
359-575
               

               
Cow position:
               
chr1:95072293-95072518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
18, 5
               

               
Conread position:
               
359-575
               

               
Cow position:
               
chr1:100753491-100753703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
12, 20
               

               
Conread position:
               
360-575
               

               
Cow position:
               
chr1:50432523-50432306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
360-575
               

               
Cow position:
               
chr1:71790185-71789973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
361-575
               

               
Cow position:
               
chr1:53603722-53603934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
362-567
               

               
Cow position:
               
chr1:867768-867974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
10, 27
               

               
Conread position:
               
363-574
               

               
Cow position:
               
chr1:81515199-81515413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
363-575
               

               
Cow position:
               
chr1:41027041-41027247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
147, 84
               

               
Conread position:
               
364-575
               

               
Cow position:
               
chr1:1496562-1496352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
146, 24
               

               
Conread position:
               
364-575
               

               
Cow position:
               
chr1:81481414-81481210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
365-573
               

               
Cow position:
               
chr1:5751280-5751488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
16, 180
               

               
Conread position:
               
366-575
               

               
Cow position:
               
chr1:73020693-73020484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
367-573
               

               
Cow position:
               
chr1:49753452-49753657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
367-575
               

               
Cow position:
               
chr1:54628883-54628677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
367-575
               

               
Cow position:
               
chr1:98911978-98912183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
130, 51
               

               
Conread position:
               
368-575
               

               
Cow position:
               
chr1:3757676-3757470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
369-575
               

               
Cow position:
               
chr1:6790745-6790949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
13, 55
               

               
Conread position:
               
371-573
               

               
Cow position:
               
chr1:852143-852346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
375-555
               

               
Cow position:
               
chr1:19515641-19515459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
375-556
               

               
Cow position:
               
chr1:102468638-102468458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
375-575
               

               
Cow position:
               
chr1:4444864-4444664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
8, 23
               

               
Conread position:
               
375-575
               

               
Cow position:
               
chr1:6731159-6731354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
53, 13
               

               
Conread position:
               
375-575
               

               
Cow position:
               
chr1:49334414-49334214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
127, 59
               

               
Conread position:
               
375-575
               

               
Cow position:
               
chr1:89158722-89158530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
17, 50
               

               
Conread position:
               
375-575
               

               
Cow position:
               
chr1:96019208-96019406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
376-541
               

               
Cow position:
               
chr1:92602999-92603163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
376-575
               

               
Cow position:
               
chr1:20871580-20871381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
377-563
               

               
Cow position:
               
chr1:3965816-3965999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
377-567
               

               
Cow position:
               
chr1:74751655-74751461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
377-570
               

               
Cow position:
               
chr1:17055974-17056160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
377-570
               

               
Cow position:
               
chr1:38706874-38706682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
51, 60
               

               
Conread position:
               
377-571
               

               
Cow position:
               
chr1:15206892-15206703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
377-573
               

               
Cow position:
               
chr1:21560992-21561193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
377-573
               

               
Cow position:
               
chr1:72422428-72422233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
377-575
               

               
Cow position:
               
chr1:54267957-54267765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
377-575
               

               
Cow position:
               
chr1:55753235-55753044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
37, 44
               

               
Conread position:
               
377-575
               

               
Cow position:
               
chr1:100823017-100823215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
20, 51
               

               
Conread position:
               
378-538
               

               
Cow position:
               
chr1:67918738-67918898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
378-557
               

               
Cow position:
               
chr1:94687790-94687612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
378-573
               

               
Cow position:
               
chr1:8271873-8271679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
188, 0
               

               
Conread position:
               
378-575
               

               
Cow position:
               
chr1:68688172-68688369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
378-575
               

               
Cow position:
               
chr1:79846270-79846072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
378-575
               

               
Cow position:
               
chr1:91861318-91861122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
13, 7
               

               
Conread position:
               
379-575
               

               
Cow position:
               
chr1:14006098-14006300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
379-575
               

               
Cow position:
               
chr1:95835816-95835620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
380-575
               

               
Cow position:
               
chr1:69940840-69940649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
381-575
               

               
Cow position:
               
chr1:45315652-45315456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
157, 0
               

               
Conread position:
               
381-575
               

               
Cow position:
               
chr1:90267705-90267899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
51, 31
               

               
Conread position:
               
382-575
               

               
Cow position:
               
chr1:600421-600227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
383-570
               

               
Cow position:
               
chr1:759432-759243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
49, 56
               

               
Conread position:
               
384-575
               

               
Cow position:
               
chr1:95152857-95153049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
13, 134
               

               
Conread position:
               
385-574
               

               
Cow position:
               
chr1:6031612-6031801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
386-573
               

               
Cow position:
               
chr1:54569684-54569874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
11, 54
               

               
Conread position:
               
386-575
               

               
Cow position:
               
chr1:96558861-96558671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
388-536
               

               
Cow position:
               
chr1:22461247-22461097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
388-567
               

               
Cow position:
               
chr1:36688387-36688209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
388-575
               

               
Cow position:
               
chr1:68688574-68688754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
390-567
               

               
Cow position:
               
chr1:31806856-31807029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
390-575
               

               
Cow position:
               
chr1:60044981-60045162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
124, 41
               

               
Conread position:
               
390-575
               

               
Cow position:
               
chr1:87083621-87083807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
393-574
               

               
Cow position:
               
chr1:11489165-11488982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
26, 49
               

               
Conread position:
               
395-575
               

               
Cow position:
               
chr1:76518420-76518600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
395-575
               

               
Cow position:
               
chr1:97540633-97540814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
25, 21
               

               
Conread position:
               
396-575
               

               
Cow position:
               
chr1:9637028-9637205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
398-573
               

               
Cow position:
               
chr1:5821514-5821689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
398-575
               

               
Cow position:
               
chr1:69691714-69691537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
24, 18
               

               
Conread position:
               
400-573
               

               
Cow position:
               
chr1:26984013-26984185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
402-575
               

               
Cow position:
               
chr1:15875665-15875834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
405-573
               

               
Cow position:
               
chr1:31231734-31231566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
405-574
               

               
Cow position:
               
chr1:96201308-96201141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
406-575
               

               
Cow position:
               
chr1:98557110-98556943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
13, 27
               

               
Conread position:
               
407-575
               

               
Cow position:
               
chr1:69532513-69532351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
408-573
               

               
Cow position:
               
chr1:84815140-84815308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
408-575
               

               
Cow position:
               
chr1:19599350-19599185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
411-570
               

               
Cow position:
               
chr1:94823378-94823219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
411-575
               

               
Cow position:
               
chr1:40303565-40303723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
412-569
               

               
Cow position:
               
chr1:4573739-4573894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
412-575
               

               
Cow position:
               
chr1:40181610-40181446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
421-575
               

               
Cow position:
               
chr1:1802193-1802345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
421-575
               

               
Cow position:
               
chr1:3244235-3244389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
423-573
               

               
Cow position:
               
chr1:102797972-102797822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
434-567
               

               
Cow position:
               
chr1:41953965-41953832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
434-575
               

               
Cow position:
               
chr1:5284195-5284051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
434-575
               

               
Cow position:
               
chr1:99637217-99637076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
436-553
               

               
Cow position:
               
chr1:37543747-37543630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
436-567
               

               
Cow position:
               
chr1:65030106-65030237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
436-573
               

               
Cow position:
               
chr1:46795797-46795931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
436-573
               

               
Cow position:
               
chr1:78029993-78029853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
436-575
               

               
Cow position:
               
chr1:3666992-3666853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
436-575
               

               
Cow position:
               
chr1:23372898-23373036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
436-575
               

               
Cow position:
               
chr1:34731083-34731222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
436-575
               

               
Cow position:
               
chr1:42796916-42797054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
436-575
               

               
Cow position:
               
chr1:85622568-85622707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
444-558
               

               
Cow position:
               
chr1:67539606-67539720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
444-574
               

               
Cow position:
               
chr1:18764574-18764446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
444-574
               

               
Cow position:
               
chr1:90879689-90879566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
444-575
               

               
Cow position:
               
chr1:1380044-1380176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
66, 73
               

               
Conread position:
               
444-575
               

               
Cow position:
               
chr1:7965893-7966022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
444-575
               

               
Cow position:
               
chr1:10523747-10523877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
444-575
               

               
Cow position:
               
chr1:41022466-41022591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
444-575
               

               
Cow position:
               
chr1:77685934-77685803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
444-575
               

               
Cow position:
               
chr1:79178675-79178806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
444-575
               

               
Cow position:
               
chr1:98380250-98380120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
445-570
               

               
Cow position:
               
chr1:69411649-69411525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
445-575
               

               
Cow position:
               
chr1:70146863-70146733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
445-575
               

               
Cow position:
               
chr1:89146827-89146697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
446-575
               

               
Cow position:
               
chr1:47190946-47190817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
447-575
               

               
Cow position:
               
chr1:79170103-79169975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
448-575
               

               
Cow position:
               
chr1:22394624-22394498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
451-570
               

               
Cow position:
               
chr1:3749527-3749408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
454-575
               

               
Cow position:
               
chr1:73398017-73397896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.