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Cow genome map

           
Conread name:
           
rcmu27_f11.y1
        

               
Conread position:
               
120-417
               

               
Cow position:
               
chr3:48269567-48269855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
109, 27
               

               
Conread position:
               
120-523
               

               
Cow position:
               
chr3:72675791-72676188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
16, 10
               

               
Conread position:
               
122-358
               

               
Cow position:
               
chr3:22872346-22872106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
153, 25
               

               
Conread position:
               
138-480
               

               
Cow position:
               
chr3:14633271-14632930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
6, 144
               

               
Conread position:
               
146-332
               

               
Cow position:
               
chr3:18607097-18607285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
86, 133
               

               
Conread position:
               
147-324
               

               
Cow position:
               
chr3:53222912-53222735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
135, 27
               

               
Conread position:
               
147-337
               

               
Cow position:
               
chr3:11640164-11640350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
156, 27
               

               
Conread position:
               
147-337
               

               
Cow position:
               
chr3:51609546-51609737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
82, 27
               

               
Conread position:
               
147-337
               

               
Cow position:
               
chr3:56704807-56704627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
147-338
               

               
Cow position:
               
chr3:72145-72331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
147-356
               

               
Cow position:
               
chr3:58951351-58951554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
192, 26
               

               
Conread position:
               
147-358
               

               
Cow position:
               
chr3:58383698-58383907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
190, 26
               

               
Conread position:
               
147-362
               

               
Cow position:
               
chr3:66610108-66609898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
190, 27
               

               
Conread position:
               
147-362
               

               
Cow position:
               
chr3:77227048-77227267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
88, 27
               

               
Conread position:
               
147-369
               

               
Cow position:
               
chr3:27544599-27544381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
137, 27
               

               
Conread position:
               
147-371
               

               
Cow position:
               
chr3:54770734-54770961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
99, 27
               

               
Conread position:
               
147-374
               

               
Cow position:
               
chr3:84000342-84000569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
190, 27
               

               
Conread position:
               
147-391
               

               
Cow position:
               
chr3:28675719-28675959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
189, 27
               

               
Conread position:
               
147-391
               

               
Cow position:
               
chr3:69849772-69849535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
189, 27
               

               
Conread position:
               
147-417
               

               
Cow position:
               
chr3:63861171-63860899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
72, 27
               

               
Conread position:
               
147-429
               

               
Cow position:
               
chr3:77496547-77496831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
89, 27
               

               
Conread position:
               
147-488
               

               
Cow position:
               
chr3:70895776-70896109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
78, 27
               

               
Conread position:
               
147-493
               

               
Cow position:
               
chr3:27532932-27532589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
88, 29
               

               
Conread position:
               
147-507
               

               
Cow position:
               
chr3:83816063-83815708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
78, 27
               

               
Conread position:
               
147-511
               

               
Cow position:
               
chr3:5096933-5097291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 91
               

               
Conread position:
               
147-511
               

               
Cow position:
               
chr3:59798984-59799332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
92, 29
               

               
Conread position:
               
147-526
               

               
Cow position:
               
chr3:28908465-28908108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
192, 27
               

               
Conread position:
               
147-533
               

               
Cow position:
               
chr3:67704270-67704648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
95, 27
               

               
Conread position:
               
147-538
               

               
Cow position:
               
chr3:70899630-70900001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
189, 27
               

               
Conread position:
               
147-539
               

               
Cow position:
               
chr3:61278636-61279020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
82, 29
               

               
Conread position:
               
147-543
               

               
Cow position:
               
chr3:23471738-23471342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 27
               

               
Conread position:
               
147-546
               

               
Cow position:
               
chr3:73443357-73442977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
147-552
               

               
Cow position:
               
chr3:72776970-72777363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
72, 27
               

               
Conread position:
               
147-560
               

               
Cow position:
               
chr3:63179598-63179990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
205, 27
               

               
Conread position:
               
147-567
               

               
Cow position:
               
chr3:7566689-7566284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 27
               

               
Conread position:
               
147-570
               

               
Cow position:
               
chr3:55124548-55124141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
190, 27
               

               
Conread position:
               
147-575
               

               
Cow position:
               
chr3:2674759-2675177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 27
               

               
Conread position:
               
147-575
               

               
Cow position:
               
chr3:14552608-14553017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 27
               

               
Conread position:
               
147-575
               

               
Cow position:
               
chr3:17222414-17221988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 27
               

               
Conread position:
               
147-575
               

               
Cow position:
               
chr3:17937109-17936702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
78, 30
               

               
Conread position:
               
147-575
               

               
Cow position:
               
chr3:20663808-20663397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
82, 29
               

               
Conread position:
               
147-575
               

               
Cow position:
               
chr3:23169340-23168920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 27
               

               
Conread position:
               
147-575
               

               
Cow position:
               
chr3:30179812-30180228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 103
               

               
Conread position:
               
147-575
               

               
Cow position:
               
chr3:30463436-30463031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 27
               

               
Conread position:
               
147-575
               

               
Cow position:
               
chr3:31309625-31309206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 27
               

               
Conread position:
               
147-575
               

               
Cow position:
               
chr3:46161115-46160714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
124, 27
               

               
Conread position:
               
147-575
               

               
Cow position:
               
chr3:53046927-53046513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
383, 27
               

               
Conread position:
               
147-575
               

               
Cow position:
               
chr3:65236755-65237168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
184, 27
               

               
Conread position:
               
147-575
               

               
Cow position:
               
chr3:74600847-74601257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
182, 24
               

               
Conread position:
               
147-575
               

               
Cow position:
               
chr3:78076919-78077335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
85, 27
               

               
Conread position:
               
148-378
               

               
Cow position:
               
chr3:42588080-42588317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
100, 26
               

               
Conread position:
               
149-426
               

               
Cow position:
               
chr3:5416499-5416223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
82, 25
               

               
Conread position:
               
151-357
               

               
Cow position:
               
chr3:8604281-8604075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
186, 135
               

               
Conread position:
               
155-575
               

               
Cow position:
               
chr3:18497759-18498163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
120, 74
               

               
Conread position:
               
155-575
               

               
Cow position:
               
chr3:53221753-53222157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 16
               

               
Conread position:
               
158-294
               

               
Cow position:
               
chr3:12979263-12979401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
158-374
               

               
Cow position:
               
chr3:42177899-42178115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
81, 16
               

               
Conread position:
               
158-525
               

               
Cow position:
               
chr3:14626411-14626052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
178, 16
               

               
Conread position:
               
158-534
               

               
Cow position:
               
chr3:73460718-73461075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
181, 78
               

               
Conread position:
               
158-573
               

               
Cow position:
               
chr3:7331377-7330990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
78, 121
               

               
Conread position:
               
158-575
               

               
Cow position:
               
chr3:54903308-54903712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
69, 186
               

               
Conread position:
               
160-575
               

               
Cow position:
               
chr3:59392367-59391980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
63, 14
               

               
Conread position:
               
161-320
               

               
Cow position:
               
chr3:23417124-23416969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
161-575
               

               
Cow position:
               
chr3:39661708-39661309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 80
               

               
Conread position:
               
161-575
               

               
Cow position:
               
chr3:68708261-68707877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
78, 37
               

               
Conread position:
               
162-376
               

               
Cow position:
               
chr3:52650789-52650573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
74, 126
               

               
Conread position:
               
162-469
               

               
Cow position:
               
chr3:46350404-46350713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
63, 12
               

               
Conread position:
               
162-526
               

               
Cow position:
               
chr3:22232897-22232558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
167, 9
               

               
Conread position:
               
162-575
               

               
Cow position:
               
chr3:74233940-74234330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
58, 12
               

               
Conread position:
               
163-318
               

               
Cow position:
               
chr3:31771444-31771596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
163-325
               

               
Cow position:
               
chr3:24639333-24639498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
66, 11
               

               
Conread position:
               
163-335
               

               
Cow position:
               
chr3:45524009-45524181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
120, 67
               

               
Conread position:
               
163-337
               

               
Cow position:
               
chr3:8147920-8147751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
163-370
               

               
Cow position:
               
chr3:15661954-15661747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
112, 11
               

               
Conread position:
               
163-414
               

               
Cow position:
               
chr3:61678436-61678692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
112, 84
               

               
Conread position:
               
163-427
               

               
Cow position:
               
chr3:5851183-5850929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
54, 116
               

               
Conread position:
               
163-429
               

               
Cow position:
               
chr3:65800338-65800594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
22, 11
               

               
Conread position:
               
163-509
               

               
Cow position:
               
chr3:55085439-55085087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 216
               

               
Conread position:
               
163-519
               

               
Cow position:
               
chr3:37599671-37599335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
167, 99
               

               
Conread position:
               
163-521
               

               
Cow position:
               
chr3:66292433-66292083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
96, 13
               

               
Conread position:
               
163-538
               

               
Cow position:
               
chr3:58540787-58540411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
61, 13
               

               
Conread position:
               
163-538
               

               
Cow position:
               
chr3:73467364-73467746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 42
               

               
Conread position:
               
163-558
               

               
Cow position:
               
chr3:75046127-75045742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
50, 68
               

               
Conread position:
               
163-569
               

               
Cow position:
               
chr3:16752508-16752115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 112
               

               
Conread position:
               
163-575
               

               
Cow position:
               
chr3:52607929-52608326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 11
               

               
Conread position:
               
163-575
               

               
Cow position:
               
chr3:75479757-75480143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
174, 64
               

               
Conread position:
               
163-575
               

               
Cow position:
               
chr3:76172917-76172537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
69, 31
               

               
Conread position:
               
163-575
               

               
Cow position:
               
chr3:80740318-80740701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
174, 11
               

               
Conread position:
               
164-428
               

               
Cow position:
               
chr3:74409238-74409484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
175, 10
               

               
Conread position:
               
164-575
               

               
Cow position:
               
chr3:17456522-17456122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
65, 10
               

               
Conread position:
               
165-288
               

               
Cow position:
               
chr3:66978591-66978714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
106, 9
               

               
Conread position:
               
165-297
               

               
Cow position:
               
chr3:68303076-68303212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
59, 9
               

               
Conread position:
               
165-350
               

               
Cow position:
               
chr3:35074428-35074614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
48, 62
               

               
Conread position:
               
165-370
               

               
Cow position:
               
chr3:6853753-6853552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
122, 9
               

               
Conread position:
               
165-376
               

               
Cow position:
               
chr3:78201015-78201226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
66, 9
               

               
Conread position:
               
165-395
               

               
Cow position:
               
chr3:5420118-5419884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
62, 12
               

               
Conread position:
               
165-416
               

               
Cow position:
               
chr3:42483648-42483897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
174, 9
               

               
Conread position:
               
165-478
               

               
Cow position:
               
chr3:71161542-71161850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
171, 9
               

               
Conread position:
               
165-491
               

               
Cow position:
               
chr3:59366295-59366617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
60, 11
               

               
Conread position:
               
165-512
               

               
Cow position:
               
chr3:18459772-18459443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
173, 9
               

               
Conread position:
               
165-538
               

               
Cow position:
               
chr3:80071864-80072242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
64, 9
               

               
Conread position:
               
165-558
               

               
Cow position:
               
chr3:2680259-2680645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
66, 9
               

               
Conread position:
               
165-565
               

               
Cow position:
               
chr3:70565990-70565599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
330, 9
               

               
Conread position:
               
165-570
               

               
Cow position:
               
chr3:78443815-78443427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
59, 9
               

               
Conread position:
               
165-573
               

               
Cow position:
               
chr3:72390828-72391231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 9
               

               
Conread position:
               
165-575
               

               
Cow position:
               
chr3:17957215-17957606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 9
               

               
Conread position:
               
165-575
               

               
Cow position:
               
chr3:39970124-39969718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 9
               

               
Conread position:
               
165-575
               

               
Cow position:
               
chr3:53909860-53910254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 9
               

               
Conread position:
               
165-575
               

               
Cow position:
               
chr3:54434721-54435113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
75, 9
               

               
Conread position:
               
165-575
               

               
Cow position:
               
chr3:55970252-55970660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 9
               

               
Conread position:
               
165-575
               

               
Cow position:
               
chr3:79884739-79884335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
110, 9
               

               
Conread position:
               
166-534
               

               
Cow position:
               
chr3:55836081-55835715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
68, 113
               

               
Conread position:
               
168-486
               

               
Cow position:
               
chr3:75727839-75727523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
54, 124
               

               
Conread position:
               
169-539
               

               
Cow position:
               
chr3:82056367-82056005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
101, 204
               

               
Conread position:
               
169-570
               

               
Cow position:
               
chr3:59649009-59649398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 60
               

               
Conread position:
               
171-402
               

               
Cow position:
               
chr3:82359798-82360029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
167, 72
               

               
Conread position:
               
171-526
               

               
Cow position:
               
chr3:57624220-57624563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
166, 70
               

               
Conread position:
               
171-560
               

               
Cow position:
               
chr3:61539549-61539934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
54, 197
               

               
Conread position:
               
172-370
               

               
Cow position:
               
chr3:77006259-77006445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
172-575
               

               
Cow position:
               
chr3:70334947-70334547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 20
               

               
Conread position:
               
173-324
               

               
Cow position:
               
chr3:14717560-14717714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
11, 119
               

               
Conread position:
               
173-480
               

               
Cow position:
               
chr3:31047195-31046899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
11, 31
               

               
Conread position:
               
173-491
               

               
Cow position:
               
chr3:15685163-15684858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
12, 114
               

               
Conread position:
               
173-506
               

               
Cow position:
               
chr3:58969141-58968824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
160, 51
               

               
Conread position:
               
173-567
               

               
Cow position:
               
chr3:77271512-77271141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
160, 63
               

               
Conread position:
               
173-570
               

               
Cow position:
               
chr3:15052190-15051812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
164, 51
               

               
Conread position:
               
173-574
               

               
Cow position:
               
chr3:44932263-44932656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 119
               

               
Conread position:
               
173-575
               

               
Cow position:
               
chr3:23735348-23734944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
51, 93
               

               
Conread position:
               
173-575
               

               
Cow position:
               
chr3:59610969-59610574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
73, 62
               

               
Conread position:
               
174-300
               

               
Cow position:
               
chr3:33693405-33693530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
55, 99
               

               
Conread position:
               
174-304
               

               
Cow position:
               
chr3:22908078-22907947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
55, 104
               

               
Conread position:
               
174-307
               

               
Cow position:
               
chr3:84368614-84368485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
174-315
               

               
Cow position:
               
chr3:22716524-22716385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
174-319
               

               
Cow position:
               
chr3:36657014-36656870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
174-324
               

               
Cow position:
               
chr3:83369078-83369221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
174-329
               

               
Cow position:
               
chr3:26894417-26894570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
60, 50
               

               
Conread position:
               
174-329
               

               
Cow position:
               
chr3:51012777-51012623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
174-329
               

               
Cow position:
               
chr3:65020090-65020245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
74, 102
               

               
Conread position:
               
174-336
               

               
Cow position:
               
chr3:34392341-34392181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
56, 86
               

               
Conread position:
               
174-337
               

               
Cow position:
               
chr3:18393628-18393471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
174-337
               

               
Cow position:
               
chr3:18854849-18855012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
109, 50
               

               
Conread position:
               
174-337
               

               
Cow position:
               
chr3:23269858-23270015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
174-337
               

               
Cow position:
               
chr3:53903942-53904096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
45, 51
               

               
Conread position:
               
174-337
               

               
Cow position:
               
chr3:55970981-55971143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
76, 112
               

               
Conread position:
               
174-337
               

               
Cow position:
               
chr3:79148520-79148352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
174-337
               

               
Cow position:
               
chr3:83988237-83988400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
64, 52
               

               
Conread position:
               
174-341
               

               
Cow position:
               
chr3:48530393-48530569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
174-342
               

               
Cow position:
               
chr3:61467361-61467528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
55, 105
               

               
Conread position:
               
174-347
               

               
Cow position:
               
chr3:364463-364282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
174-351
               

               
Cow position:
               
chr3:63332566-63332752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
174-352
               

               
Cow position:
               
chr3:13118101-13118276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
50, 143
               

               
Conread position:
               
174-355
               

               
Cow position:
               
chr3:61361158-61361344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
22, 36
               

               
Conread position:
               
174-356
               

               
Cow position:
               
chr3:69750944-69750764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
163, 51
               

               
Conread position:
               
174-358
               

               
Cow position:
               
chr3:59208570-59208755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
157, 101
               

               
Conread position:
               
174-358
               

               
Cow position:
               
chr3:69961955-69961775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
155, 80
               

               
Conread position:
               
174-358
               

               
Cow position:
               
chr3:70333720-70333540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
101, 73
               

               
Conread position:
               
174-361
               

               
Cow position:
               
chr3:25691505-25691698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
51, 86
               

               
Conread position:
               
174-362
               

               
Cow position:
               
chr3:57763979-57764171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
51, 105
               

               
Conread position:
               
174-364
               

               
Cow position:
               
chr3:5899581-5899771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
157, 15
               

               
Conread position:
               
174-364
               

               
Cow position:
               
chr3:23277786-23277596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
163, 77
               

               
Conread position:
               
174-364
               

               
Cow position:
               
chr3:45312809-45312996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
163, 69
               

               
Conread position:
               
174-365
               

               
Cow position:
               
chr3:57554090-57553903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
161, 40
               

               
Conread position:
               
174-365
               

               
Cow position:
               
chr3:59691660-59691843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
139, 58
               

               
Conread position:
               
174-366
               

               
Cow position:
               
chr3:26970581-26970776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
53, 114
               

               
Conread position:
               
174-368
               

               
Cow position:
               
chr3:81940007-81940206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
55, 103
               

               
Conread position:
               
174-370
               

               
Cow position:
               
chr3:15752872-15752681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
165, 50
               

               
Conread position:
               
174-370
               

               
Cow position:
               
chr3:27285981-27286184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
51, 184
               

               
Conread position:
               
174-370
               

               
Cow position:
               
chr3:31501103-31501302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
55, 105
               

               
Conread position:
               
174-370
               

               
Cow position:
               
chr3:45307690-45307886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
51, 104
               

               
Conread position:
               
174-371
               

               
Cow position:
               
chr3:4087410-4087211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
101, 70
               

               
Conread position:
               
174-372
               

               
Cow position:
               
chr3:17952412-17952611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
163, 76
               

               
Conread position:
               
174-373
               

               
Cow position:
               
chr3:28692674-28692479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
134, 54
               

               
Conread position:
               
174-374
               

               
Cow position:
               
chr3:3164740-3164539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
97, 114
               

               
Conread position:
               
174-374
               

               
Cow position:
               
chr3:26903871-26904066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
174-374
               

               
Cow position:
               
chr3:44623143-44622930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
100, 50
               

               
Conread position:
               
174-374
               

               
Cow position:
               
chr3:47284593-47284792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
101, 69
               

               
Conread position:
               
174-374
               

               
Cow position:
               
chr3:49218552-49218358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
84, 31
               

               
Conread position:
               
174-374
               

               
Cow position:
               
chr3:49731882-49731683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
165, 73
               

               
Conread position:
               
174-375
               

               
Cow position:
               
chr3:31298404-31298194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
60, 144
               

               
Conread position:
               
174-376
               

               
Cow position:
               
chr3:4031724-4031929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
61, 103
               

               
Conread position:
               
174-377
               

               
Cow position:
               
chr3:29807218-29807425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
55, 82
               

               
Conread position:
               
174-377
               

               
Cow position:
               
chr3:41328211-41328406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
165, 71
               

               
Conread position:
               
174-381
               

               
Cow position:
               
chr3:59701769-59701972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
101, 57
               

               
Conread position:
               
174-391
               

               
Cow position:
               
chr3:54959946-54960162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
101, 73
               

               
Conread position:
               
174-394
               

               
Cow position:
               
chr3:7858108-7858347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
44, 230
               

               
Conread position:
               
174-398
               

               
Cow position:
               
chr3:35283342-35283118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
55, 105
               

               
Conread position:
               
174-401
               

               
Cow position:
               
chr3:19198437-19198652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
198, 113
               

               
Conread position:
               
174-402
               

               
Cow position:
               
chr3:48578597-48578816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
174-415
               

               
Cow position:
               
chr3:72018875-72019107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
174-416
               

               
Cow position:
               
chr3:1133339-1133088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
174-416
               

               
Cow position:
               
chr3:17451178-17450950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
50, 105
               

               
Conread position:
               
174-416
               

               
Cow position:
               
chr3:33698477-33698720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
62, 188
               

               
Conread position:
               
174-417
               

               
Cow position:
               
chr3:41367228-41366990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
163, 110
               

               
Conread position:
               
174-418
               

               
Cow position:
               
chr3:49230766-49231008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
50, 107
               

               
Conread position:
               
174-420
               

               
Cow position:
               
chr3:19789363-19789120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
76, 69
               

               
Conread position:
               
174-421
               

               
Cow position:
               
chr3:4332119-4332359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
45, 118
               

               
Conread position:
               
174-424
               

               
Cow position:
               
chr3:60892388-60892620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
164, 107
               

               
Conread position:
               
174-426
               

               
Cow position:
               
chr3:79208247-79207989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
55, 148
               

               
Conread position:
               
174-466
               

               
Cow position:
               
chr3:66375077-66375358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
148, 37
               

               
Conread position:
               
174-467
               

               
Cow position:
               
chr3:61171754-61171467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
101, 75
               

               
Conread position:
               
174-469
               

               
Cow position:
               
chr3:22820325-22820613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
164, 52
               

               
Conread position:
               
174-472
               

               
Cow position:
               
chr3:73759761-73759472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
58, 17
               

               
Conread position:
               
174-476
               

               
Cow position:
               
chr3:4457320-4457022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
55, 134
               

               
Conread position:
               
174-477
               

               
Cow position:
               
chr3:71430456-71430154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
55, 105
               

               
Conread position:
               
174-495
               

               
Cow position:
               
chr3:23445134-23444820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
174-504
               

               
Cow position:
               
chr3:45534544-45534219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
55, 105
               

               
Conread position:
               
174-506
               

               
Cow position:
               
chr3:45647895-45648209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
163, 69
               

               
Conread position:
               
174-507
               

               
Cow position:
               
chr3:9641320-9641648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
53, 113
               

               
Conread position:
               
174-507
               

               
Cow position:
               
chr3:81371412-81371729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
162, 50
               

               
Conread position:
               
174-508
               

               
Cow position:
               
chr3:19006423-19006738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
256, 61
               

               
Conread position:
               
174-508
               

               
Cow position:
               
chr3:45647432-45647761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
43, 116
               

               
Conread position:
               
174-508
               

               
Cow position:
               
chr3:58767035-58767344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
174-508
               

               
Cow position:
               
chr3:59101591-59101908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
159, 50
               

               
Conread position:
               
174-508
               

               
Cow position:
               
chr3:73764440-73764119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
167, 101
               

               
Conread position:
               
174-509
               

               
Cow position:
               
chr3:56615-56295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
46, 77
               

               
Conread position:
               
174-511
               

               
Cow position:
               
chr3:5374089-5374412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
51, 84
               

               
Conread position:
               
174-511
               

               
Cow position:
               
chr3:26065757-26066085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
74, 103
               

               
Conread position:
               
174-511
               

               
Cow position:
               
chr3:29887668-29887336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
45, 53
               

               
Conread position:
               
174-511
               

               
Cow position:
               
chr3:53739434-53739101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
55, 115
               

               
Conread position:
               
174-512
               

               
Cow position:
               
chr3:525110-525432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
135, 59
               

               
Conread position:
               
174-512
               

               
Cow position:
               
chr3:26920652-26920995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
73, 124
               

               
Conread position:
               
174-514
               

               
Cow position:
               
chr3:10347111-10347442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
165, 104
               

               
Conread position:
               
174-516
               

               
Cow position:
               
chr3:46900950-46901286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
45, 120
               

               
Conread position:
               
174-518
               

               
Cow position:
               
chr3:15229063-15228732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
105, 62
               

               
Conread position:
               
174-519
               

               
Cow position:
               
chr3:36672247-36671901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
62, 150
               

               
Conread position:
               
174-519
               

               
Cow position:
               
chr3:62826867-62826527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
55, 105
               

               
Conread position:
               
174-520
               

               
Cow position:
               
chr3:4049966-4050286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
165, 33
               

               
Conread position:
               
174-520
               

               
Cow position:
               
chr3:5101005-5100679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
165, 54
               

               
Conread position:
               
174-520
               

               
Cow position:
               
chr3:5365442-5365770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
104, 49
               

               
Conread position:
               
174-520
               

               
Cow position:
               
chr3:26219306-26218960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
55, 111
               

               
Conread position:
               
174-520
               

               
Cow position:
               
chr3:34270686-34271007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
164, 13
               

               
Conread position:
               
174-520
               

               
Cow position:
               
chr3:49650135-49650481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 119
               

               
Conread position:
               
174-521
               

               
Cow position:
               
chr3:42423575-42423234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
175, 73
               

               
Conread position:
               
174-521
               

               
Cow position:
               
chr3:55272287-55271951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 62
               

               
Conread position:
               
174-522
               

               
Cow position:
               
chr3:23448375-23448042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
101, 53
               

               
Conread position:
               
174-523
               

               
Cow position:
               
chr3:2216115-2216464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 187
               

               
Conread position:
               
174-525
               

               
Cow position:
               
chr3:56476438-56476780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
163, 62
               

               
Conread position:
               
174-525
               

               
Cow position:
               
chr3:59451350-59451702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
107, 36
               

               
Conread position:
               
174-526
               

               
Cow position:
               
chr3:115963-116289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
159, 18
               

               
Conread position:
               
174-526
               

               
Cow position:
               
chr3:6873489-6873155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
43, 102
               

               
Conread position:
               
174-526
               

               
Cow position:
               
chr3:29812999-29813331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
74, 102
               

               
Conread position:
               
174-529
               

               
Cow position:
               
chr3:3738240-3738583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
57, 116
               

               
Conread position:
               
174-529
               

               
Cow position:
               
chr3:79292590-79292929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 69
               

               
Conread position:
               
174-530
               

               
Cow position:
               
chr3:49382708-49383051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
101, 73
               

               
Conread position:
               
174-531
               

               
Cow position:
               
chr3:32584914-32585254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
162, 54
               

               
Conread position:
               
174-531
               

               
Cow position:
               
chr3:59000990-59000654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 62
               

               
Conread position:
               
174-531
               

               
Cow position:
               
chr3:80053778-80053440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
101, 50
               

               
Conread position:
               
174-532
               

               
Cow position:
               
chr3:52017513-52017876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
76, 203
               

               
Conread position:
               
174-532
               

               
Cow position:
               
chr3:56059563-56059918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 53
               

               
Conread position:
               
174-534
               

               
Cow position:
               
chr3:75080522-75080867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
55, 104
               

               
Conread position:
               
174-537
               

               
Cow position:
               
chr3:53112925-53113285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 105
               

               
Conread position:
               
174-538
               

               
Cow position:
               
chr3:35299430-35299776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
165, 59
               

               
Conread position:
               
174-539
               

               
Cow position:
               
chr3:14263148-14263504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
159, 183
               

               
Conread position:
               
174-539
               

               
Cow position:
               
chr3:70401658-70402008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
164, 99
               

               
Conread position:
               
174-541
               

               
Cow position:
               
chr3:18066890-18067246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 112
               

               
Conread position:
               
174-542
               

               
Cow position:
               
chr3:60597304-60597657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
163, 34
               

               
Conread position:
               
174-543
               

               
Cow position:
               
chr3:54945880-54946247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
52, 115
               

               
Conread position:
               
174-543
               

               
Cow position:
               
chr3:59588275-59588629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
163, 114
               

               
Conread position:
               
174-553
               

               
Cow position:
               
chr3:68583247-68582874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
134, 101
               

               
Conread position:
               
174-557
               

               
Cow position:
               
chr3:79220606-79220988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 185
               

               
Conread position:
               
174-558
               

               
Cow position:
               
chr3:28898467-28898091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 101
               

               
Conread position:
               
174-558
               

               
Cow position:
               
chr3:73708805-73709175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 22
               

               
Conread position:
               
174-560
               

               
Cow position:
               
chr3:31206628-31207009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 177
               

               
Conread position:
               
174-565
               

               
Cow position:
               
chr3:43233259-43233638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 118
               

               
Conread position:
               
174-567
               

               
Cow position:
               
chr3:2397027-2396658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
55, 105
               

               
Conread position:
               
174-567
               

               
Cow position:
               
chr3:14601958-14601566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
58, 36
               

               
Conread position:
               
174-567
               

               
Cow position:
               
chr3:20802874-20802503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
106, 201
               

               
Conread position:
               
174-567
               

               
Cow position:
               
chr3:62999249-62998857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
51, 154
               

               
Conread position:
               
174-570
               

               
Cow position:
               
chr3:29596150-29596536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 73
               

               
Conread position:
               
174-571
               

               
Cow position:
               
chr3:53572994-53572608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
101, 65
               

               
Conread position:
               
174-571
               

               
Cow position:
               
chr3:80564716-80565104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 43
               

               
Conread position:
               
174-573
               

               
Cow position:
               
chr3:3985086-3985459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
163, 73
               

               
Conread position:
               
174-573
               

               
Cow position:
               
chr3:16547432-16547813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
58, 133
               

               
Conread position:
               
174-573
               

               
Cow position:
               
chr3:25690541-25690943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 178
               

               
Conread position:
               
174-573
               

               
Cow position:
               
chr3:30055690-30055306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
101, 64
               

               
Conread position:
               
174-573
               

               
Cow position:
               
chr3:49482953-49482569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 69
               

               
Conread position:
               
174-573
               

               
Cow position:
               
chr3:57577450-57577839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 91
               

               
Conread position:
               
174-573
               

               
Cow position:
               
chr3:75050862-75050478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
96, 73
               

               
Conread position:
               
174-573
               

               
Cow position:
               
chr3:82020088-82019699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
58, 129
               

               
Conread position:
               
174-574
               

               
Cow position:
               
chr3:64281180-64280794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
54, 101
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr3:210079-210467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 61
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr3:2024940-2025348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 76
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr3:2506725-2506331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 117
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr3:4461733-4461344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
159, 89
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr3:5045054-5044665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
58, 171
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr3:7338018-7337639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
52, 117
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr3:8393102-8393485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
62, 116
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr3:9663431-9663024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 129
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr3:10958473-10958096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
165, 70
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr3:11254393-11254020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr3:13353113-13353509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
55, 108
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr3:13899697-13899309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
55, 187
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr3:14801507-14801892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
47, 62
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr3:15954321-15953937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
162, 76
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr3:16333562-16333949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
163, 69
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr3:17695249-17694857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
65, 167
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr3:20129698-20130082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
109, 166
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr3:23876754-23877145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
257, 54
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr3:30009154-30008761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 131
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr3:33253125-33252747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
101, 158
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr3:45184090-45183676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
112, 55
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr3:45279213-45279614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
19, 11
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr3:45881665-45882044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
163, 101
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr3:49461181-49460781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 201
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr3:50768434-50768824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
58, 117
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr3:51234340-51233959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
163, 64
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr3:52652318-52651935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
163, 67
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr3:53150083-53150478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
52, 93
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr3:53270582-53270978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 103
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr3:53384527-53384135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr3:53592945-53592541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 195
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr3:54050263-54049884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
74, 43
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr3:55117216-55116832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
53, 170
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr3:55189995-55189605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
38, 56
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr3:55947331-55947744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 188
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr3:60933171-60933563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 134
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr3:61857252-61857654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 162
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr3:65058457-65058843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 27
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr3:65413520-65413129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 37
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr3:66900986-66900581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 158
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr3:68647916-68648322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
55, 118
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr3:73394872-73395260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
55, 105
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr3:74621241-74620848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
55, 100
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr3:77365538-77365142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 37
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr3:79902259-79902642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 162
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr3:83490832-83491225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
56, 197
               

               
Conread position:
               
175-317
               

               
Cow position:
               
chr3:61262560-61262699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
175-351
               

               
Cow position:
               
chr3:83920955-83921131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
54, 104
               

               
Conread position:
               
175-352
               

               
Cow position:
               
chr3:8717003-8717187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
64, 11
               

               
Conread position:
               
175-364
               

               
Cow position:
               
chr3:44535010-44534813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
58, 52
               

               
Conread position:
               
175-365
               

               
Cow position:
               
chr3:18763651-18763841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
103, 54
               

               
Conread position:
               
175-374
               

               
Cow position:
               
chr3:9843340-9843543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
49, 104
               

               
Conread position:
               
175-374
               

               
Cow position:
               
chr3:49787163-49787370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
54, 188
               

               
Conread position:
               
175-374
               

               
Cow position:
               
chr3:59514868-59515060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
163, 53
               

               
Conread position:
               
175-376
               

               
Cow position:
               
chr3:39171727-39171525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
68, 101
               

               
Conread position:
               
175-378
               

               
Cow position:
               
chr3:31903353-31903153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
98, 35
               

               
Conread position:
               
175-417
               

               
Cow position:
               
chr3:59271308-59271533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
162, 41
               

               
Conread position:
               
175-417
               

               
Cow position:
               
chr3:73590241-73590004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
162, 9
               

               
Conread position:
               
175-450
               

               
Cow position:
               
chr3:74499981-74500266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
55, 215
               

               
Conread position:
               
175-486
               

               
Cow position:
               
chr3:74878832-74878530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
100, 17
               

               
Conread position:
               
175-510
               

               
Cow position:
               
chr3:17895611-17895931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
213, 39
               

               
Conread position:
               
175-517
               

               
Cow position:
               
chr3:27289694-27290032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
64, 130
               

               
Conread position:
               
175-519
               

               
Cow position:
               
chr3:48252651-48252977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
138, 23
               

               
Conread position:
               
175-532
               

               
Cow position:
               
chr3:12712166-12711810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 114
               

               
Conread position:
               
175-532
               

               
Cow position:
               
chr3:81471344-81470993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 159
               

               
Conread position:
               
175-534
               

               
Cow position:
               
chr3:48241378-48241720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 67
               

               
Conread position:
               
175-534
               

               
Cow position:
               
chr3:82460941-82461286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
162, 43
               

               
Conread position:
               
175-538
               

               
Cow position:
               
chr3:52863428-52863072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 38
               

               
Conread position:
               
175-558
               

               
Cow position:
               
chr3:1830806-1830445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
253, 18
               

               
Conread position:
               
175-567
               

               
Cow position:
               
chr3:6689751-6690140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 160
               

               
Conread position:
               
175-567
               

               
Cow position:
               
chr3:72473664-72474059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 116
               

               
Conread position:
               
175-570
               

               
Cow position:
               
chr3:23408586-23408223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
161, 44
               

               
Conread position:
               
175-575
               

               
Cow position:
               
chr3:3032152-3032554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 26
               

               
Conread position:
               
175-575
               

               
Cow position:
               
chr3:24852830-24852443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
54, 117
               

               
Conread position:
               
175-575
               

               
Cow position:
               
chr3:48362840-48363214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
52, 19
               

               
Conread position:
               
175-575
               

               
Cow position:
               
chr3:59473869-59474265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
50, 118
               

               
Conread position:
               
175-575
               

               
Cow position:
               
chr3:71497388-71496984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
57, 82
               

               
Conread position:
               
175-575
               

               
Cow position:
               
chr3:74088417-74088032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
54, 139
               

               
Conread position:
               
175-575
               

               
Cow position:
               
chr3:83474504-83474899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
129, 68
               

               
Conread position:
               
176-316
               

               
Cow position:
               
chr3:70468046-70467910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
99, 57
               

               
Conread position:
               
176-329
               

               
Cow position:
               
chr3:77276647-77276498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
176-331
               

               
Cow position:
               
chr3:78067379-78067222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
55, 8
               

               
Conread position:
               
176-358
               

               
Cow position:
               
chr3:13577428-13577248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
123, 109
               

               
Conread position:
               
176-358
               

               
Cow position:
               
chr3:36100586-36100776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
176-358
               

               
Cow position:
               
chr3:82657327-82657144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
99, 67
               

               
Conread position:
               
176-361
               

               
Cow position:
               
chr3:20437888-20437708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
161, 57
               

               
Conread position:
               
176-373
               

               
Cow position:
               
chr3:81401548-81401351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
72, 103
               

               
Conread position:
               
176-383
               

               
Cow position:
               
chr3:23944855-23945069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
49, 126
               

               
Conread position:
               
176-389
               

               
Cow position:
               
chr3:20155587-20155797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
160, 112
               

               
Conread position:
               
176-393
               

               
Cow position:
               
chr3:68342496-68342281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
35, 27
               

               
Conread position:
               
176-395
               

               
Cow position:
               
chr3:23477994-23478202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
176-395
               

               
Cow position:
               
chr3:67161689-67161919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
44, 196
               

               
Conread position:
               
176-406
               

               
Cow position:
               
chr3:78946078-78945852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
52, 17
               

               
Conread position:
               
176-467
               

               
Cow position:
               
chr3:74699637-74699342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
51, 20
               

               
Conread position:
               
176-491
               

               
Cow position:
               
chr3:22089524-22089213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
60, 33
               

               
Conread position:
               
176-507
               

               
Cow position:
               
chr3:38346959-38347270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
72, 85
               

               
Conread position:
               
176-508
               

               
Cow position:
               
chr3:35852710-35852390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
61, 98
               

               
Conread position:
               
176-511
               

               
Cow position:
               
chr3:66708314-66707983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
128, 99
               

               
Conread position:
               
176-519
               

               
Cow position:
               
chr3:67744870-67744536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
25, 104
               

               
Conread position:
               
176-520
               

               
Cow position:
               
chr3:38691648-38691314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
89, 67
               

               
Conread position:
               
176-532
               

               
Cow position:
               
chr3:48296467-48296803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
160, 110
               

               
Conread position:
               
176-533
               

               
Cow position:
               
chr3:8393697-8394050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
161, 77
               

               
Conread position:
               
176-533
               

               
Cow position:
               
chr3:59630741-59630409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
157, 71
               

               
Conread position:
               
176-533
               

               
Cow position:
               
chr3:61143851-61144200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
72, 184
               

               
Conread position:
               
176-533
               

               
Cow position:
               
chr3:79592131-79591785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
53, 192
               

               
Conread position:
               
176-534
               

               
Cow position:
               
chr3:71237915-71238260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 20
               

               
Conread position:
               
176-536
               

               
Cow position:
               
chr3:43571498-43571857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
160, 112
               

               
Conread position:
               
176-538
               

               
Cow position:
               
chr3:17935165-17934824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
146, 52
               

               
Conread position:
               
176-548
               

               
Cow position:
               
chr3:72168963-72168609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
52, 83
               

               
Conread position:
               
176-567
               

               
Cow position:
               
chr3:39066091-39066470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
52, 69
               

               
Conread position:
               
176-574
               

               
Cow position:
               
chr3:13302098-13301705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 76
               

               
Conread position:
               
176-575
               

               
Cow position:
               
chr3:2393208-2392824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 75
               

               
Conread position:
               
176-575
               

               
Cow position:
               
chr3:7763422-7763803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
75, 113
               

               
Conread position:
               
176-575
               

               
Cow position:
               
chr3:11987088-11987473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 65
               

               
Conread position:
               
176-575
               

               
Cow position:
               
chr3:12705801-12705402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
52, 122
               

               
Conread position:
               
176-575
               

               
Cow position:
               
chr3:13330015-13329648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
176-575
               

               
Cow position:
               
chr3:15387969-15388367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 116
               

               
Conread position:
               
176-575
               

               
Cow position:
               
chr3:18686674-18687046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
155, 43
               

               
Conread position:
               
176-575
               

               
Cow position:
               
chr3:20675121-20674731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
71, 21
               

               
Conread position:
               
176-575
               

               
Cow position:
               
chr3:29891659-29891261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 27
               

               
Conread position:
               
176-575
               

               
Cow position:
               
chr3:48852210-48851822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 164
               

               
Conread position:
               
176-575
               

               
Cow position:
               
chr3:49119273-49118885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
58, 116
               

               
Conread position:
               
176-575
               

               
Cow position:
               
chr3:49678880-49679279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
90, 115
               

               
Conread position:
               
176-575
               

               
Cow position:
               
chr3:54782252-54781848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
160, 9
               

               
Conread position:
               
176-575
               

               
Cow position:
               
chr3:57754726-57754330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 194
               

               
Conread position:
               
176-575
               

               
Cow position:
               
chr3:65968912-65969319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 192
               

               
Conread position:
               
176-575
               

               
Cow position:
               
chr3:71231164-71231543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
97, 52
               

               
Conread position:
               
176-575
               

               
Cow position:
               
chr3:75158123-75158503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
163, 57
               

               
Conread position:
               
176-575
               

               
Cow position:
               
chr3:77188200-77188585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
242, 65
               

               
Conread position:
               
177-524
               

               
Cow position:
               
chr3:33327463-33327807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
123, 109
               

               
Conread position:
               
177-569
               

               
Cow position:
               
chr3:68627916-68627548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
162, 52
               

               
Conread position:
               
178-357
               

               
Cow position:
               
chr3:11019878-11020061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
51, 34
               

               
Conread position:
               
178-372
               

               
Cow position:
               
chr3:83201768-83201571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
51, 101
               

               
Conread position:
               
178-376
               

               
Cow position:
               
chr3:16362978-16362777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
70, 98
               

               
Conread position:
               
178-416
               

               
Cow position:
               
chr3:80082058-80081824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
160, 64
               

               
Conread position:
               
178-417
               

               
Cow position:
               
chr3:43528477-43528246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
159, 125
               

               
Conread position:
               
178-534
               

               
Cow position:
               
chr3:53790781-53790429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
57, 101
               

               
Conread position:
               
178-575
               

               
Cow position:
               
chr3:3556303-3556693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 146
               

               
Conread position:
               
178-575
               

               
Cow position:
               
chr3:18184828-18185222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
61, 179
               

               
Conread position:
               
178-575
               

               
Cow position:
               
chr3:69417028-69416633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
72, 115
               

               
Conread position:
               
179-328
               

               
Cow position:
               
chr3:80922329-80922477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
179-362
               

               
Cow position:
               
chr3:7678432-7678613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
159, 49
               

               
Conread position:
               
179-376
               

               
Cow position:
               
chr3:30358873-30358675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
154, 57
               

               
Conread position:
               
179-403
               

               
Cow position:
               
chr3:30417890-30418112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
157, 71
               

               
Conread position:
               
179-492
               

               
Cow position:
               
chr3:11736379-11736065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
55, 178
               

               
Conread position:
               
179-500
               

               
Cow position:
               
chr3:79112619-79112309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
52, 114
               

               
Conread position:
               
179-508
               

               
Cow position:
               
chr3:74533109-74533430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
50, 103
               

               
Conread position:
               
179-533
               

               
Cow position:
               
chr3:80581432-80581759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
160, 57
               

               
Conread position:
               
179-566
               

               
Cow position:
               
chr3:8060893-8061260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
157, 40
               

               
Conread position:
               
179-567
               

               
Cow position:
               
chr3:35915464-35915857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
58, 35
               

               
Conread position:
               
179-574
               

               
Cow position:
               
chr3:20256961-20257364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
50, 113
               

               
Conread position:
               
179-575
               

               
Cow position:
               
chr3:2036059-2036449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
157, 109
               

               
Conread position:
               
179-575
               

               
Cow position:
               
chr3:2518776-2518396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
71, 113
               

               
Conread position:
               
179-575
               

               
Cow position:
               
chr3:14725058-14725461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
50, 113
               

               
Conread position:
               
179-575
               

               
Cow position:
               
chr3:31077971-31077579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 76
               

               
Conread position:
               
179-575
               

               
Cow position:
               
chr3:51578560-51578179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
60, 100
               

               
Conread position:
               
179-575
               

               
Cow position:
               
chr3:56582604-56582993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
158, 109
               

               
Conread position:
               
179-575
               

               
Cow position:
               
chr3:70675981-70676376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
71, 112
               

               
Conread position:
               
179-575
               

               
Cow position:
               
chr3:73961918-73961549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
96, 54
               

               
Conread position:
               
179-575
               

               
Cow position:
               
chr3:75570681-75570301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
104, 24
               

               
Conread position:
               
179-575
               

               
Cow position:
               
chr3:80973114-80973496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
46, 113
               

               
Conread position:
               
180-358
               

               
Cow position:
               
chr3:4861451-4861624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
180-485
               

               
Cow position:
               
chr3:34937602-34937902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
52, 110
               

               
Conread position:
               
180-575
               

               
Cow position:
               
chr3:63315893-63316272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
49, 99
               

               
Conread position:
               
181-337
               

               
Cow position:
               
chr3:29334751-29334594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
51, 96
               

               
Conread position:
               
181-534
               

               
Cow position:
               
chr3:17134102-17134441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
180, 69
               

               
Conread position:
               
181-538
               

               
Cow position:
               
chr3:13507226-13507579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
49, 97
               

               
Conread position:
               
181-546
               

               
Cow position:
               
chr3:27940365-27940024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
357, 94
               

               
Conread position:
               
181-567
               

               
Cow position:
               
chr3:31419464-31419832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
182-531
               

               
Cow position:
               
chr3:49327701-49328052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
43, 107
               

               
Conread position:
               
183-515
               

               
Cow position:
               
chr3:11711718-11712055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
53, 13
               

               
Conread position:
               
183-538
               

               
Cow position:
               
chr3:17447843-17447504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
121, 79
               

               
Conread position:
               
183-575
               

               
Cow position:
               
chr3:188624-189020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 198
               

               
Conread position:
               
183-575
               

               
Cow position:
               
chr3:27274298-27274672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
156, 53
               

               
Conread position:
               
184-523
               

               
Cow position:
               
chr3:15192329-15192676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
7, 154
               

               
Conread position:
               
185-429
               

               
Cow position:
               
chr3:55106676-55106437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
52, 149
               

               
Conread position:
               
185-538
               

               
Cow position:
               
chr3:67930411-67930076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
7, 38
               

               
Conread position:
               
186-532
               

               
Cow position:
               
chr3:21547334-21546995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
43, 136
               

               
Conread position:
               
187-572
               

               
Cow position:
               
chr3:68881346-68880989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
42, 7
               

               
Conread position:
               
187-575
               

               
Cow position:
               
chr3:78092740-78092366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
42, 9
               

               
Conread position:
               
189-503
               

               
Cow position:
               
chr3:76015070-76015368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
147, 42
               

               
Conread position:
               
189-533
               

               
Cow position:
               
chr3:59621865-59621542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
149, 14
               

               
Conread position:
               
190-339
               

               
Cow position:
               
chr3:23215812-23215654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
39, 148
               

               
Conread position:
               
190-382
               

               
Cow position:
               
chr3:53836913-53836727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
118, 70
               

               
Conread position:
               
190-567
               

               
Cow position:
               
chr3:68146064-68145714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
190-575
               

               
Cow position:
               
chr3:63507492-63507112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
97, 61
               

               
Conread position:
               
191-539
               

               
Cow position:
               
chr3:15506220-15506561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
38, 98
               

               
Conread position:
               
191-567
               

               
Cow position:
               
chr3:32310666-32310276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
38, 188
               

               
Conread position:
               
191-573
               

               
Cow position:
               
chr3:74119673-74119285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
38, 183
               

               
Conread position:
               
192-370
               

               
Cow position:
               
chr3:66866626-66866443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
84, 121
               

               
Conread position:
               
192-523
               

               
Cow position:
               
chr3:26960821-26960492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
37, 100
               

               
Conread position:
               
192-539
               

               
Cow position:
               
chr3:38863891-38864241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
141, 44
               

               
Conread position:
               
193-358
               

               
Cow position:
               
chr3:42367724-42367561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
193-417
               

               
Cow position:
               
chr3:80908070-80908295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
82, 111
               

               
Conread position:
               
193-575
               

               
Cow position:
               
chr3:74134480-74134852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
148, 92
               

               
Conread position:
               
194-494
               

               
Cow position:
               
chr3:13517380-13517090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
139, 35
               

               
Conread position:
               
194-567
               

               
Cow position:
               
chr3:56612132-56612500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
35, 16
               

               
Conread position:
               
195-500
               

               
Cow position:
               
chr3:6772821-6772519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
42, 98
               

               
Conread position:
               
195-573
               

               
Cow position:
               
chr3:54374084-54373714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
63, 94
               

               
Conread position:
               
196-361
               

               
Cow position:
               
chr3:2198660-2198827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
117, 90
               

               
Conread position:
               
196-575
               

               
Cow position:
               
chr3:83215031-83215414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
79, 173
               

               
Conread position:
               
197-567
               

               
Cow position:
               
chr3:11063157-11063504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
35, 82
               

               
Conread position:
               
199-414
               

               
Cow position:
               
chr3:3062341-3062555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
9, 47
               

               
Conread position:
               
199-416
               

               
Cow position:
               
chr3:39328181-39328389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
138, 44
               

               
Conread position:
               
199-575
               

               
Cow position:
               
chr3:8571096-8571476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
157, 37
               

               
Conread position:
               
200-369
               

               
Cow position:
               
chr3:55063086-55062917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
137, 88
               

               
Conread position:
               
200-575
               

               
Cow position:
               
chr3:67698061-67698424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
137, 85
               

               
Conread position:
               
201-567
               

               
Cow position:
               
chr3:45211078-45211441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 108
               

               
Conread position:
               
201-575
               

               
Cow position:
               
chr3:25944860-25945240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 158
               

               
Conread position:
               
202-363
               

               
Cow position:
               
chr3:75534896-75535054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
202-416
               

               
Cow position:
               
chr3:15859887-15859677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
27, 88
               

               
Conread position:
               
203-494
               

               
Cow position:
               
chr3:78896433-78896714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
14, 65
               

               
Conread position:
               
203-575
               

               
Cow position:
               
chr3:70609407-70609770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
32, 88
               

               
Conread position:
               
203-575
               

               
Cow position:
               
chr3:76713537-76713167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
134, 46
               

               
Conread position:
               
208-570
               

               
Cow position:
               
chr3:55319108-55318758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
129, 21
               

               
Conread position:
               
209-504
               

               
Cow position:
               
chr3:15904180-15903884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
196, 79
               

               
Conread position:
               
210-567
               

               
Cow position:
               
chr3:36375756-36375401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 116
               

               
Conread position:
               
210-575
               

               
Cow position:
               
chr3:23105574-23105220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
211-575
               

               
Cow position:
               
chr3:83727458-83727104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
26, 97
               

               
Conread position:
               
213-546
               

               
Cow position:
               
chr3:57760293-57760617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
126, 74
               

               
Conread position:
               
214-374
               

               
Cow position:
               
chr3:65380949-65381106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
214-417
               

               
Cow position:
               
chr3:59885180-59885383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
61, 164
               

               
Conread position:
               
215-539
               

               
Cow position:
               
chr3:67520379-67520053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
55, 38
               

               
Conread position:
               
216-497
               

               
Cow position:
               
chr3:81359318-81359036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
20, 156
               

               
Conread position:
               
219-424
               

               
Cow position:
               
chr3:62790214-62790009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
56, 5
               

               
Conread position:
               
219-502
               

               
Cow position:
               
chr3:3637988-3638253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
219-531
               

               
Cow position:
               
chr3:55712231-55712544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 5
               

               
Conread position:
               
219-575
               

               
Cow position:
               
chr3:27697177-27696819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
117, 5
               

               
Conread position:
               
220-531
               

               
Cow position:
               
chr3:49791011-49790710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
27, 13
               

               
Conread position:
               
220-575
               

               
Cow position:
               
chr3:38035790-38035443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
141, 67
               

               
Conread position:
               
220-575
               

               
Cow position:
               
chr3:83798038-83797678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
10, 135
               

               
Conread position:
               
224-374
               

               
Cow position:
               
chr3:61024498-61024345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
113, 46
               

               
Conread position:
               
224-455
               

               
Cow position:
               
chr3:70631824-70632049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
193, 60
               

               
Conread position:
               
224-507
               

               
Cow position:
               
chr3:66884135-66883864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
115, 64
               

               
Conread position:
               
224-575
               

               
Cow position:
               
chr3:53095130-53094783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
51, 138
               

               
Conread position:
               
224-575
               

               
Cow position:
               
chr3:53875953-53875617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
113, 60
               

               
Conread position:
               
224-575
               

               
Cow position:
               
chr3:74079833-74079493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
115, 61
               

               
Conread position:
               
225-575
               

               
Cow position:
               
chr3:13890274-13890625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
50, 142
               

               
Conread position:
               
225-575
               

               
Cow position:
               
chr3:44101776-44102112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
114, 142
               

               
Conread position:
               
229-508
               

               
Cow position:
               
chr3:34669917-34669652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
186, 58
               

               
Conread position:
               
229-519
               

               
Cow position:
               
chr3:63269036-63269314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
108, 41
               

               
Conread position:
               
229-575
               

               
Cow position:
               
chr3:55434142-55434476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
107, 32
               

               
Conread position:
               
232-565
               

               
Cow position:
               
chr3:19198801-19199123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
140, 55
               

               
Conread position:
               
232-566
               

               
Cow position:
               
chr3:75687625-75687299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
105, 56
               

               
Conread position:
               
232-573
               

               
Cow position:
               
chr3:1453308-1452980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
51, 72
               

               
Conread position:
               
233-573
               

               
Cow position:
               
chr3:32787276-32787605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
50, 14
               

               
Conread position:
               
233-573
               

               
Cow position:
               
chr3:45667535-45667200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
6, 15
               

               
Conread position:
               
233-575
               

               
Cow position:
               
chr3:53318218-53318555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
104, 55
               

               
Conread position:
               
233-575
               

               
Cow position:
               
chr3:54506522-54506851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
10, 54
               

               
Conread position:
               
236-525
               

               
Cow position:
               
chr3:79092577-79092291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
47, 104
               

               
Conread position:
               
236-567
               

               
Cow position:
               
chr3:15751904-15751577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
77, 51
               

               
Conread position:
               
236-570
               

               
Cow position:
               
chr3:59718660-59718991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
100, 52
               

               
Conread position:
               
236-575
               

               
Cow position:
               
chr3:44837564-44837221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
12, 72
               

               
Conread position:
               
239-575
               

               
Cow position:
               
chr3:70762302-70761978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
95, 46
               

               
Conread position:
               
241-575
               

               
Cow position:
               
chr3:62046485-62046816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
98, 44
               

               
Conread position:
               
244-539
               

               
Cow position:
               
chr3:81507286-81506996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
39, 82
               

               
Conread position:
               
244-569
               

               
Cow position:
               
chr3:19585688-19586003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
92, 17
               

               
Conread position:
               
244-575
               

               
Cow position:
               
chr3:3913625-3913292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
39, 130
               

               
Conread position:
               
244-575
               

               
Cow position:
               
chr3:18144291-18143968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
92, 39
               

               
Conread position:
               
244-575
               

               
Cow position:
               
chr3:26739594-26739279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
45, 124
               

               
Conread position:
               
244-575
               

               
Cow position:
               
chr3:55819573-55819894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
31, 126
               

               
Conread position:
               
244-575
               

               
Cow position:
               
chr3:59034862-59035188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
31, 13
               

               
Conread position:
               
247-575
               

               
Cow position:
               
chr3:23920601-23920281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 40
               

               
Conread position:
               
249-570
               

               
Cow position:
               
chr3:71478422-71478734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
158, 39
               

               
Conread position:
               
249-575
               

               
Cow position:
               
chr3:72255589-72255273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
84, 24
               

               
Conread position:
               
250-533
               

               
Cow position:
               
chr3:26874422-26874697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
44, 13
               

               
Conread position:
               
251-509
               

               
Cow position:
               
chr3:55109782-55109531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
88, 12
               

               
Conread position:
               
251-517
               

               
Cow position:
               
chr3:30222018-30222281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
24, 37
               

               
Conread position:
               
251-575
               

               
Cow position:
               
chr3:26489252-26488932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
32, 89
               

               
Conread position:
               
252-570
               

               
Cow position:
               
chr3:68616491-68616195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
87, 33
               

               
Conread position:
               
252-575
               

               
Cow position:
               
chr3:68586855-68587163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
85, 23
               

               
Conread position:
               
253-575
               

               
Cow position:
               
chr3:48073039-48072738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
253-575
               

               
Cow position:
               
chr3:76268146-76267829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
22, 8
               

               
Conread position:
               
254-534
               

               
Cow position:
               
chr3:59884237-59883963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
85, 33
               

               
Conread position:
               
257-572
               

               
Cow position:
               
chr3:41129560-41129856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
18, 47
               

               
Conread position:
               
260-573
               

               
Cow position:
               
chr3:15153534-15153831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
79, 26
               

               
Conread position:
               
260-575
               

               
Cow position:
               
chr3:77581950-77582251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
79, 27
               

               
Conread position:
               
261-575
               

               
Cow position:
               
chr3:29946237-29946534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
171, 27
               

               
Conread position:
               
263-573
               

               
Cow position:
               
chr3:24468534-24468239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
130, 12
               

               
Conread position:
               
263-575
               

               
Cow position:
               
chr3:81439679-81439985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
133, 25
               

               
Conread position:
               
264-575
               

               
Cow position:
               
chr3:2648668-2648363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
23, 61
               

               
Conread position:
               
264-575
               

               
Cow position:
               
chr3:19793747-19793445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
58, 99
               

               
Conread position:
               
265-573
               

               
Cow position:
               
chr3:11200137-11199833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
10, 92
               

               
Conread position:
               
266-575
               

               
Cow position:
               
chr3:55177905-55177606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
73, 90
               

               
Conread position:
               
266-575
               

               
Cow position:
               
chr3:70334117-70333824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
73, 22
               

               
Conread position:
               
267-567
               

               
Cow position:
               
chr3:12978768-12978478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
72, 21
               

               
Conread position:
               
275-575
               

               
Cow position:
               
chr3:1890259-1889961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
7, 96
               

               
Conread position:
               
275-575
               

               
Cow position:
               
chr3:15443874-15443581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
64, 14
               

               
Conread position:
               
275-575
               

               
Cow position:
               
chr3:59040422-59040715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
277-575
               

               
Cow position:
               
chr3:21015103-21014808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
59, 17
               

               
Conread position:
               
277-575
               

               
Cow position:
               
chr3:51033227-51033517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
246, 77
               

               
Conread position:
               
277-575
               

               
Cow position:
               
chr3:73820513-73820217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
60, 85
               

               
Conread position:
               
277-575
               

               
Cow position:
               
chr3:79271866-79271564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
18, 95
               

               
Conread position:
               
278-570
               

               
Cow position:
               
chr3:48900480-48900190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
61, 33
               

               
Conread position:
               
278-575
               

               
Cow position:
               
chr3:47417708-47417426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
58, 92
               

               
Conread position:
               
279-507
               

               
Cow position:
               
chr3:46541969-46541749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
60, 86
               

               
Conread position:
               
279-575
               

               
Cow position:
               
chr3:3883960-3883675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
59, 77
               

               
Conread position:
               
280-544
               

               
Cow position:
               
chr3:5366630-5366885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
280-574
               

               
Cow position:
               
chr3:60264856-60264577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
56, 28
               

               
Conread position:
               
281-575
               

               
Cow position:
               
chr3:79196620-79196908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
244, 72
               

               
Conread position:
               
283-573
               

               
Cow position:
               
chr3:13380424-13380135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
56, 120
               

               
Conread position:
               
283-575
               

               
Cow position:
               
chr3:5696866-5696584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
245, 5
               

               
Conread position:
               
287-538
               

               
Cow position:
               
chr3:84175959-84175713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
50, 105
               

               
Conread position:
               
287-575
               

               
Cow position:
               
chr3:59604716-59604987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
10, 46
               

               
Conread position:
               
288-536
               

               
Cow position:
               
chr3:22509894-22510132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
51, 68
               

               
Conread position:
               
288-575
               

               
Cow position:
               
chr3:72342112-72342393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
51, 74
               

               
Conread position:
               
290-573
               

               
Cow position:
               
chr3:35056109-35055833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
49, 73
               

               
Conread position:
               
291-569
               

               
Cow position:
               
chr3:76155858-76156125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
294-575
               

               
Cow position:
               
chr3:58134814-58134539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
42, 63
               

               
Conread position:
               
303-534
               

               
Cow position:
               
chr3:72504016-72503789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
36, 64
               

               
Conread position:
               
307-573
               

               
Cow position:
               
chr3:73837830-73837575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
32, 49
               

               
Conread position:
               
307-575
               

               
Cow position:
               
chr3:4268696-4268429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
32, 49
               

               
Conread position:
               
311-542
               

               
Cow position:
               
chr3:84157558-84157330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
311-575
               

               
Cow position:
               
chr3:3656404-3656663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
28, 55
               

               
Conread position:
               
312-538
               

               
Cow position:
               
chr3:33329705-33329930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
24, 58
               

               
Conread position:
               
312-573
               

               
Cow position:
               
chr3:55094343-55094086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
22, 52
               

               
Conread position:
               
313-575
               

               
Cow position:
               
chr3:18059594-18059849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
26, 54
               

               
Conread position:
               
336-570
               

               
Cow position:
               
chr3:40145385-40145607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
31, 44
               

               
Conread position:
               
336-575
               

               
Cow position:
               
chr3:11640646-11640881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
95, 31
               

               
Conread position:
               
336-575
               

               
Cow position:
               
chr3:75238376-75238605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
338-575
               

               
Cow position:
               
chr3:27976606-27976377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
90, 29
               

               
Conread position:
               
358-575
               

               
Cow position:
               
chr3:29334485-29334265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
9, 21
               

               
Conread position:
               
358-575
               

               
Cow position:
               
chr3:49996794-49996572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
360-565
               

               
Cow position:
               
chr3:64196758-64196960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
23, 168
               

               
Conread position:
               
360-575
               

               
Cow position:
               
chr3:83889181-83889394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
362-575
               

               
Cow position:
               
chr3:27553464-27553678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
363-567
               

               
Cow position:
               
chr3:33048458-33048255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
21, 11
               

               
Conread position:
               
363-575
               

               
Cow position:
               
chr3:80733917-80733705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
364-575
               

               
Cow position:
               
chr3:31350168-31349963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
13, 146
               

               
Conread position:
               
364-575
               

               
Cow position:
               
chr3:84174237-84174449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
15, 24
               

               
Conread position:
               
366-573
               

               
Cow position:
               
chr3:39996951-39996748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
71, 11
               

               
Conread position:
               
366-575
               

               
Cow position:
               
chr3:3316877-3316663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
14, 87
               

               
Conread position:
               
367-575
               

               
Cow position:
               
chr3:10668939-10668734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
123, 75
               

               
Conread position:
               
367-575
               

               
Cow position:
               
chr3:54067732-54067942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
20, 56
               

               
Conread position:
               
368-566
               

               
Cow position:
               
chr3:32409152-32409356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
368-575
               

               
Cow position:
               
chr3:51609243-51609039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
28, 18
               

               
Conread position:
               
368-575
               

               
Cow position:
               
chr3:68303256-68303463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
27, 51
               

               
Conread position:
               
369-575
               

               
Cow position:
               
chr3:76269832-76270033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
27, 10
               

               
Conread position:
               
370-575
               

               
Cow position:
               
chr3:12090617-12090822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
140, 9
               

               
Conread position:
               
370-575
               

               
Cow position:
               
chr3:23132227-23132023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
9, 140
               

               
Conread position:
               
371-573
               

               
Cow position:
               
chr3:13241131-13240930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
375-541
               

               
Cow position:
               
chr3:7581769-7581603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
156, 105
               

               
Conread position:
               
375-574
               

               
Cow position:
               
chr3:8349617-8349424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
53, 133
               

               
Conread position:
               
375-575
               

               
Cow position:
               
chr3:9120793-9120990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
375-575
               

               
Cow position:
               
chr3:11281714-11281914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
375-575
               

               
Cow position:
               
chr3:20841925-20841735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
375-575
               

               
Cow position:
               
chr3:69144642-69144841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
376-570
               

               
Cow position:
               
chr3:15950964-15950778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
376-570
               

               
Cow position:
               
chr3:81923850-81923653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
163, 59
               

               
Conread position:
               
376-575
               

               
Cow position:
               
chr3:22165466-22165270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
92, 71
               

               
Conread position:
               
376-575
               

               
Cow position:
               
chr3:27083100-27082896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
42, 60
               

               
Conread position:
               
377-575
               

               
Cow position:
               
chr3:40213083-40212890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
55, 34
               

               
Conread position:
               
377-575
               

               
Cow position:
               
chr3:48468123-48468321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
378-575
               

               
Cow position:
               
chr3:38783557-38783753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
155, 0
               

               
Conread position:
               
378-575
               

               
Cow position:
               
chr3:46792336-46792528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
379-573
               

               
Cow position:
               
chr3:75107726-75107915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
151, 0
               

               
Conread position:
               
381-570
               

               
Cow position:
               
chr3:10841766-10841956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
34, 53
               

               
Conread position:
               
381-575
               

               
Cow position:
               
chr3:66631398-66631198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
118, 185
               

               
Conread position:
               
386-573
               

               
Cow position:
               
chr3:4071804-4071626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
386-573
               

               
Cow position:
               
chr3:79272614-79272433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
46, 51
               

               
Conread position:
               
388-567
               

               
Cow position:
               
chr3:70756680-70756502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
388-575
               

               
Cow position:
               
chr3:15973527-15973715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
390-575
               

               
Cow position:
               
chr3:73525276-73525090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
394-575
               

               
Cow position:
               
chr3:5551846-5551664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
394-575
               

               
Cow position:
               
chr3:18248919-18249100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
394-575
               

               
Cow position:
               
chr3:32569820-32570003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
394-575
               

               
Cow position:
               
chr3:35624578-35624398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
394-575
               

               
Cow position:
               
chr3:44959909-44960090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
395-575
               

               
Cow position:
               
chr3:5703146-5703321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
395-575
               

               
Cow position:
               
chr3:22889049-22888869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
114, 143
               

               
Conread position:
               
395-575
               

               
Cow position:
               
chr3:48483146-48483326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
401-575
               

               
Cow position:
               
chr3:80958536-80958364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
21, 26
               

               
Conread position:
               
402-573
               

               
Cow position:
               
chr3:81666774-81666942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
405-575
               

               
Cow position:
               
chr3:47199149-47198980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
149, 0
               

               
Conread position:
               
406-573
               

               
Cow position:
               
chr3:77171296-77171461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
411-575
               

               
Cow position:
               
chr3:11027260-11027422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
411-575
               

               
Cow position:
               
chr3:25735922-25735758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
17, 27
               

               
Conread position:
               
411-575
               

               
Cow position:
               
chr3:61024039-61023875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
412-573
               

               
Cow position:
               
chr3:18700126-18699965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
412-575
               

               
Cow position:
               
chr3:59947650-59947813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
414-575
               

               
Cow position:
               
chr3:55730480-55730321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
421-569
               

               
Cow position:
               
chr3:62789960-62789811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
89, 16
               

               
Conread position:
               
421-570
               

               
Cow position:
               
chr3:58614450-58614604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
421-570
               

               
Cow position:
               
chr3:70431424-70431574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
102, 48
               

               
Conread position:
               
421-575
               

               
Cow position:
               
chr3:43389134-43388980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
421-575
               

               
Cow position:
               
chr3:51150122-51150277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
11, 17
               

               
Conread position:
               
421-575
               

               
Cow position:
               
chr3:63860617-63860465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
423-567
               

               
Cow position:
               
chr3:62312792-62312935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
98, 31
               

               
Conread position:
               
423-567
               

               
Cow position:
               
chr3:62370051-62370194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
98, 31
               

               
Conread position:
               
434-575
               

               
Cow position:
               
chr3:79398149-79398290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
436-575
               

               
Cow position:
               
chr3:9718243-9718104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
436-575
               

               
Cow position:
               
chr3:24220569-24220435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
436-575
               

               
Cow position:
               
chr3:83199520-83199658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
438-575
               

               
Cow position:
               
chr3:76056274-76056143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
439-575
               

               
Cow position:
               
chr3:3453591-3453727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
444-575
               

               
Cow position:
               
chr3:29234664-29234532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
444-575
               

               
Cow position:
               
chr3:60370999-60371129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
444-575
               

               
Cow position:
               
chr3:63069349-63069216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
444-575
               

               
Cow position:
               
chr3:74515321-74515191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
71, 90
               

               
Conread position:
               
444-575
               

               
Cow position:
               
chr3:76168615-76168484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
444-575
               

               
Cow position:
               
chr3:83934742-83934869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
445-575
               

               
Cow position:
               
chr3:58929517-58929387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
451-575
               

               
Cow position:
               
chr3:44218789-44218913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
465-575
               

               
Cow position:
               
chr3:61680352-61680462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.