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Cow genome map

           
Conread name:
           
rcmu27_f11.y1
        

               
Conread position:
               
126-575
               

               
Cow position:
               
chr6:12668876-12669307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 14
               

               
Conread position:
               
139-476
               

               
Cow position:
               
chr6:22503139-22502798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
85, 203
               

               
Conread position:
               
139-538
               

               
Cow position:
               
chr6:54864881-54864485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 24
               

               
Conread position:
               
141-525
               

               
Cow position:
               
chr6:66131097-66131466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
134, 10
               

               
Conread position:
               
143-551
               

               
Cow position:
               
chr6:31260776-31261183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
81, 31
               

               
Conread position:
               
146-575
               

               
Cow position:
               
chr6:16746132-16746555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
65, 28
               

               
Conread position:
               
147-298
               

               
Cow position:
               
chr6:3719215-3719061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
20, 29
               

               
Conread position:
               
147-304
               

               
Cow position:
               
chr6:60017861-60018013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
55, 29
               

               
Conread position:
               
147-316
               

               
Cow position:
               
chr6:9375581-9375407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
85, 27
               

               
Conread position:
               
147-320
               

               
Cow position:
               
chr6:42931318-42931142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
82, 132
               

               
Conread position:
               
147-351
               

               
Cow position:
               
chr6:39994668-39994464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
85, 27
               

               
Conread position:
               
147-368
               

               
Cow position:
               
chr6:40264404-40264184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
190, 27
               

               
Conread position:
               
147-369
               

               
Cow position:
               
chr6:642784-642549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
82, 29
               

               
Conread position:
               
147-370
               

               
Cow position:
               
chr6:51674711-51674928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
191, 27
               

               
Conread position:
               
147-383
               

               
Cow position:
               
chr6:12500653-12500886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
101, 27
               

               
Conread position:
               
147-417
               

               
Cow position:
               
chr6:54885120-54884851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
128, 27
               

               
Conread position:
               
147-417
               

               
Cow position:
               
chr6:62479372-62479106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
101, 15
               

               
Conread position:
               
147-432
               

               
Cow position:
               
chr6:36928442-36928730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
25, 7
               

               
Conread position:
               
147-455
               

               
Cow position:
               
chr6:57405331-57405033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
134, 27
               

               
Conread position:
               
147-506
               

               
Cow position:
               
chr6:20098171-20097816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
147-507
               

               
Cow position:
               
chr6:14958556-14958196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
89, 27
               

               
Conread position:
               
147-507
               

               
Cow position:
               
chr6:66874155-66874493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
190, 27
               

               
Conread position:
               
147-508
               

               
Cow position:
               
chr6:12551061-12551415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
80, 16
               

               
Conread position:
               
147-508
               

               
Cow position:
               
chr6:16706800-16707157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
161, 27
               

               
Conread position:
               
147-512
               

               
Cow position:
               
chr6:9008818-9008463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
287, 27
               

               
Conread position:
               
147-519
               

               
Cow position:
               
chr6:28977238-28976884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
20, 31
               

               
Conread position:
               
147-535
               

               
Cow position:
               
chr6:35103534-35103158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
111, 16
               

               
Conread position:
               
147-539
               

               
Cow position:
               
chr6:66532008-66531646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
188, 13
               

               
Conread position:
               
147-556
               

               
Cow position:
               
chr6:28148043-28148448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 28
               

               
Conread position:
               
147-567
               

               
Cow position:
               
chr6:8637068-8637478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
127, 27
               

               
Conread position:
               
147-569
               

               
Cow position:
               
chr6:13688018-13687613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
193, 27
               

               
Conread position:
               
147-571
               

               
Cow position:
               
chr6:16103409-16102986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
128, 27
               

               
Conread position:
               
147-573
               

               
Cow position:
               
chr6:35181460-35181047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 27
               

               
Conread position:
               
147-575
               

               
Cow position:
               
chr6:5095757-5095330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 27
               

               
Conread position:
               
147-575
               

               
Cow position:
               
chr6:10106203-10105771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 27
               

               
Conread position:
               
147-575
               

               
Cow position:
               
chr6:15305376-15305780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
362, 7
               

               
Conread position:
               
147-575
               

               
Cow position:
               
chr6:17997522-17997108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
393, 27
               

               
Conread position:
               
147-575
               

               
Cow position:
               
chr6:38853865-38853447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
82, 27
               

               
Conread position:
               
147-575
               

               
Cow position:
               
chr6:44194752-44194344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
82, 27
               

               
Conread position:
               
148-575
               

               
Cow position:
               
chr6:46465622-46466027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
149-518
               

               
Cow position:
               
chr6:38218467-38218821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
208, 25
               

               
Conread position:
               
155-538
               

               
Cow position:
               
chr6:35993377-35993758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
32, 19
               

               
Conread position:
               
155-573
               

               
Cow position:
               
chr6:3978866-3978433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
76, 21
               

               
Conread position:
               
160-575
               

               
Cow position:
               
chr6:44566217-44566635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
76, 132
               

               
Conread position:
               
161-357
               

               
Cow position:
               
chr6:24004355-24004544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
176, 13
               

               
Conread position:
               
161-361
               

               
Cow position:
               
chr6:55688843-55689048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
68, 13
               

               
Conread position:
               
161-370
               

               
Cow position:
               
chr6:8187713-8187502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
75, 105
               

               
Conread position:
               
162-358
               

               
Cow position:
               
chr6:50445956-50445756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
15, 9
               

               
Conread position:
               
162-376
               

               
Cow position:
               
chr6:14839223-14839006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
16, 9
               

               
Conread position:
               
162-485
               

               
Cow position:
               
chr6:57164233-57164551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
15, 58
               

               
Conread position:
               
162-507
               

               
Cow position:
               
chr6:35613606-35613273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
258, 11
               

               
Conread position:
               
162-538
               

               
Cow position:
               
chr6:25407584-25407217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
199, 12
               

               
Conread position:
               
163-355
               

               
Cow position:
               
chr6:53139121-53138920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
163-373
               

               
Cow position:
               
chr6:8804719-8804514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
174, 11
               

               
Conread position:
               
163-393
               

               
Cow position:
               
chr6:22968885-22969119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
69, 142
               

               
Conread position:
               
163-417
               

               
Cow position:
               
chr6:6460348-6460596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
66, 11
               

               
Conread position:
               
163-417
               

               
Cow position:
               
chr6:46205826-46206067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
36, 17
               

               
Conread position:
               
163-533
               

               
Cow position:
               
chr6:46570926-46571276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
347, 89
               

               
Conread position:
               
163-534
               

               
Cow position:
               
chr6:14949673-14949308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
79, 127
               

               
Conread position:
               
163-538
               

               
Cow position:
               
chr6:20605741-20606134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
61, 119
               

               
Conread position:
               
163-565
               

               
Cow position:
               
chr6:2547050-2547454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 11
               

               
Conread position:
               
163-570
               

               
Cow position:
               
chr6:6264452-6264856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 11
               

               
Conread position:
               
163-571
               

               
Cow position:
               
chr6:61269138-61269516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
176, 55
               

               
Conread position:
               
163-573
               

               
Cow position:
               
chr6:41375560-41375977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
66, 222
               

               
Conread position:
               
163-575
               

               
Cow position:
               
chr6:3952331-3952730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 11
               

               
Conread position:
               
163-575
               

               
Cow position:
               
chr6:20157133-20157544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 11
               

               
Conread position:
               
163-575
               

               
Cow position:
               
chr6:21004465-21004889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 11
               

               
Conread position:
               
163-575
               

               
Cow position:
               
chr6:47519854-47520263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
62, 116
               

               
Conread position:
               
163-575
               

               
Cow position:
               
chr6:66363435-66363023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 11
               

               
Conread position:
               
163-575
               

               
Cow position:
               
chr6:66433757-66434163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 13
               

               
Conread position:
               
164-368
               

               
Cow position:
               
chr6:45160482-45160280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
173, 10
               

               
Conread position:
               
165-304
               

               
Cow position:
               
chr6:89097-88957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
60, 9
               

               
Conread position:
               
165-328
               

               
Cow position:
               
chr6:55607995-55607841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
165-328
               

               
Cow position:
               
chr6:59015750-59015587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
125, 9
               

               
Conread position:
               
165-365
               

               
Cow position:
               
chr6:21311947-21311740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
60, 9
               

               
Conread position:
               
165-372
               

               
Cow position:
               
chr6:20231014-20230810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
110, 9
               

               
Conread position:
               
165-502
               

               
Cow position:
               
chr6:63272803-63272473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
62, 12
               

               
Conread position:
               
165-509
               

               
Cow position:
               
chr6:23532474-23532800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
64, 11
               

               
Conread position:
               
165-538
               

               
Cow position:
               
chr6:6343237-6343606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
266, 9
               

               
Conread position:
               
165-565
               

               
Cow position:
               
chr6:52478617-52478212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 101
               

               
Conread position:
               
165-569
               

               
Cow position:
               
chr6:51581447-51581052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 9
               

               
Conread position:
               
165-575
               

               
Cow position:
               
chr6:7539385-7539782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 9
               

               
Conread position:
               
165-575
               

               
Cow position:
               
chr6:21456879-21456468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
83, 9
               

               
Conread position:
               
165-575
               

               
Cow position:
               
chr6:24781753-24781342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
65, 9
               

               
Conread position:
               
165-575
               

               
Cow position:
               
chr6:26915141-26915537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 9
               

               
Conread position:
               
165-575
               

               
Cow position:
               
chr6:39358530-39358134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
139, 9
               

               
Conread position:
               
165-575
               

               
Cow position:
               
chr6:46557867-46558263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
173, 11
               

               
Conread position:
               
165-575
               

               
Cow position:
               
chr6:46860357-46859961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
64, 9
               

               
Conread position:
               
166-575
               

               
Cow position:
               
chr6:31535759-31535364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
63, 8
               

               
Conread position:
               
168-575
               

               
Cow position:
               
chr6:4383305-4383683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
145, 61
               

               
Conread position:
               
169-361
               

               
Cow position:
               
chr6:11637934-11637748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
159, 64
               

               
Conread position:
               
169-565
               

               
Cow position:
               
chr6:28482830-28483216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 5
               

               
Conread position:
               
169-567
               

               
Cow position:
               
chr6:33302226-33302597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
106, 67
               

               
Conread position:
               
171-337
               

               
Cow position:
               
chr6:65862502-65862670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
58, 120
               

               
Conread position:
               
171-402
               

               
Cow position:
               
chr6:415910-416145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
60, 108
               

               
Conread position:
               
171-480
               

               
Cow position:
               
chr6:30973857-30974159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
54, 115
               

               
Conread position:
               
171-492
               

               
Cow position:
               
chr6:23248147-23247837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
54, 108
               

               
Conread position:
               
171-575
               

               
Cow position:
               
chr6:53933032-53932636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
77, 117
               

               
Conread position:
               
173-374
               

               
Cow position:
               
chr6:18968955-18968760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
165, 31
               

               
Conread position:
               
173-534
               

               
Cow position:
               
chr6:64431757-64432109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 98
               

               
Conread position:
               
173-573
               

               
Cow position:
               
chr6:19695624-19696016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 67
               

               
Conread position:
               
173-573
               

               
Cow position:
               
chr6:24902323-24901948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
66, 37
               

               
Conread position:
               
173-573
               

               
Cow position:
               
chr6:60859488-60859091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
56, 145
               

               
Conread position:
               
173-575
               

               
Cow position:
               
chr6:2607431-2607817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
63, 108
               

               
Conread position:
               
173-575
               

               
Cow position:
               
chr6:15300999-15300631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
44, 57
               

               
Conread position:
               
174-273
               

               
Cow position:
               
chr6:6117730-6117632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
100
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
174-299
               

               
Cow position:
               
chr6:51463797-51463670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
68, 105
               

               
Conread position:
               
174-307
               

               
Cow position:
               
chr6:17068001-17067868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
174-315
               

               
Cow position:
               
chr6:36011513-36011648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
174-320
               

               
Cow position:
               
chr6:59302006-59301857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
51, 105
               

               
Conread position:
               
174-321
               

               
Cow position:
               
chr6:12845135-12845277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
134, 40
               

               
Conread position:
               
174-328
               

               
Cow position:
               
chr6:12623287-12623441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
51, 105
               

               
Conread position:
               
174-328
               

               
Cow position:
               
chr6:21534878-21535027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
174-331
               

               
Cow position:
               
chr6:37603342-37603495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
174-331
               

               
Cow position:
               
chr6:46245504-46245343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
174-331
               

               
Cow position:
               
chr6:46666923-46667086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
55, 28
               

               
Conread position:
               
174-334
               

               
Cow position:
               
chr6:10605504-10605665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
55, 136
               

               
Conread position:
               
174-334
               

               
Cow position:
               
chr6:32210808-32210651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
174-335
               

               
Cow position:
               
chr6:22877338-22877180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
101, 14
               

               
Conread position:
               
174-337
               

               
Cow position:
               
chr6:1783953-1783797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
57, 18
               

               
Conread position:
               
174-337
               

               
Cow position:
               
chr6:2012838-2012999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
174-337
               

               
Cow position:
               
chr6:7694535-7694368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
58, 29
               

               
Conread position:
               
174-337
               

               
Cow position:
               
chr6:64449212-64449372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
101, 17
               

               
Conread position:
               
174-343
               

               
Cow position:
               
chr6:41824007-41823837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
58, 116
               

               
Conread position:
               
174-356
               

               
Cow position:
               
chr6:58076043-58076231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
174-357
               

               
Cow position:
               
chr6:12629843-12630028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
101, 88
               

               
Conread position:
               
174-358
               

               
Cow position:
               
chr6:24327319-24327137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
163, 51
               

               
Conread position:
               
174-358
               

               
Cow position:
               
chr6:26910050-26909859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
51, 79
               

               
Conread position:
               
174-358
               

               
Cow position:
               
chr6:32916101-32915919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
165, 62
               

               
Conread position:
               
174-361
               

               
Cow position:
               
chr6:9733012-9732836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
163, 44
               

               
Conread position:
               
174-361
               

               
Cow position:
               
chr6:10695688-10695874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
55, 9
               

               
Conread position:
               
174-362
               

               
Cow position:
               
chr6:14201517-14201708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
57, 134
               

               
Conread position:
               
174-362
               

               
Cow position:
               
chr6:44098903-44099096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
174-363
               

               
Cow position:
               
chr6:5462230-5462051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
174-364
               

               
Cow position:
               
chr6:388990-389184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
157, 22
               

               
Conread position:
               
174-367
               

               
Cow position:
               
chr6:242633-242823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
156, 50
               

               
Conread position:
               
174-367
               

               
Cow position:
               
chr6:62324810-62325006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
101, 124
               

               
Conread position:
               
174-370
               

               
Cow position:
               
chr6:54369081-54368886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
185, 0
               

               
Conread position:
               
174-373
               

               
Cow position:
               
chr6:16737839-16738038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
163, 101
               

               
Conread position:
               
174-374
               

               
Cow position:
               
chr6:34075838-34076049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
101, 50
               

               
Conread position:
               
174-374
               

               
Cow position:
               
chr6:53710935-53711135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
163, 101
               

               
Conread position:
               
174-376
               

               
Cow position:
               
chr6:16411014-16411213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
165, 67
               

               
Conread position:
               
174-376
               

               
Cow position:
               
chr6:53519804-53519602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
163, 86
               

               
Conread position:
               
174-378
               

               
Cow position:
               
chr6:607081-607280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
54, 118
               

               
Conread position:
               
174-389
               

               
Cow position:
               
chr6:48425502-48425284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
101, 55
               

               
Conread position:
               
174-401
               

               
Cow position:
               
chr6:33276858-33277096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
55, 34
               

               
Conread position:
               
174-412
               

               
Cow position:
               
chr6:49685404-49685634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
165, 95
               

               
Conread position:
               
174-414
               

               
Cow position:
               
chr6:47150598-47150843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
101, 193
               

               
Conread position:
               
174-415
               

               
Cow position:
               
chr6:25008533-25008770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
164, 92
               

               
Conread position:
               
174-415
               

               
Cow position:
               
chr6:52025835-52025598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
139, 133
               

               
Conread position:
               
174-416
               

               
Cow position:
               
chr6:49410870-49410644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
174-416
               

               
Cow position:
               
chr6:53731340-53731577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
163, 99
               

               
Conread position:
               
174-417
               

               
Cow position:
               
chr6:25773562-25773331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
163, 61
               

               
Conread position:
               
174-417
               

               
Cow position:
               
chr6:67304620-67304859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
58, 136
               

               
Conread position:
               
174-424
               

               
Cow position:
               
chr6:50119968-50119721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
101, 73
               

               
Conread position:
               
174-429
               

               
Cow position:
               
chr6:5673048-5673313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
174-436
               

               
Cow position:
               
chr6:62925174-62924926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
163, 73
               

               
Conread position:
               
174-440
               

               
Cow position:
               
chr6:21542139-21542400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
165, 101
               

               
Conread position:
               
174-447
               

               
Cow position:
               
chr6:14850895-14850630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
79, 69
               

               
Conread position:
               
174-455
               

               
Cow position:
               
chr6:24961964-24962237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
55, 116
               

               
Conread position:
               
174-467
               

               
Cow position:
               
chr6:67968795-67968507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
62, 104
               

               
Conread position:
               
174-468
               

               
Cow position:
               
chr6:52248316-52248025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
55, 105
               

               
Conread position:
               
174-469
               

               
Cow position:
               
chr6:130346-130057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
55, 105
               

               
Conread position:
               
174-469
               

               
Cow position:
               
chr6:12337803-12338099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
101, 200
               

               
Conread position:
               
174-472
               

               
Cow position:
               
chr6:38614643-38614921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
163, 62
               

               
Conread position:
               
174-483
               

               
Cow position:
               
chr6:56842978-56843274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
162, 61
               

               
Conread position:
               
174-485
               

               
Cow position:
               
chr6:49002906-49002618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
164, 55
               

               
Conread position:
               
174-490
               

               
Cow position:
               
chr6:54140632-54140924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
260, 55
               

               
Conread position:
               
174-495
               

               
Cow position:
               
chr6:27110407-27110729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
32, 105
               

               
Conread position:
               
174-495
               

               
Cow position:
               
chr6:60057837-60057523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
101, 136
               

               
Conread position:
               
174-496
               

               
Cow position:
               
chr6:53401188-53401488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
165, 45
               

               
Conread position:
               
174-504
               

               
Cow position:
               
chr6:21062064-21061745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
113, 45
               

               
Conread position:
               
174-507
               

               
Cow position:
               
chr6:31525867-31526190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
51, 98
               

               
Conread position:
               
174-508
               

               
Cow position:
               
chr6:16423518-16423846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
74, 102
               

               
Conread position:
               
174-508
               

               
Cow position:
               
chr6:18988035-18988354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
321, 69
               

               
Conread position:
               
174-508
               

               
Cow position:
               
chr6:34196329-34196004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
163, 55
               

               
Conread position:
               
174-508
               

               
Cow position:
               
chr6:60350480-60350147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
58, 115
               

               
Conread position:
               
174-510
               

               
Cow position:
               
chr6:36470744-36470415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 62
               

               
Conread position:
               
174-511
               

               
Cow position:
               
chr6:21231355-21231673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
160, 62
               

               
Conread position:
               
174-511
               

               
Cow position:
               
chr6:24031194-24031524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
52, 105
               

               
Conread position:
               
174-514
               

               
Cow position:
               
chr6:1886844-1886516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
162, 49
               

               
Conread position:
               
174-519
               

               
Cow position:
               
chr6:19681705-19681369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
58, 32
               

               
Conread position:
               
174-519
               

               
Cow position:
               
chr6:42565505-42565843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 11
               

               
Conread position:
               
174-519
               

               
Cow position:
               
chr6:63047395-63047748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
174-520
               

               
Cow position:
               
chr6:528458-528126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
63, 117
               

               
Conread position:
               
174-520
               

               
Cow position:
               
chr6:9751221-9750900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
174-521
               

               
Cow position:
               
chr6:11169523-11169861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
40, 14
               

               
Conread position:
               
174-521
               

               
Cow position:
               
chr6:42961548-42961205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
58, 153
               

               
Conread position:
               
174-521
               

               
Cow position:
               
chr6:60442237-60442565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
97, 86
               

               
Conread position:
               
174-522
               

               
Cow position:
               
chr6:46865774-46865432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
110, 182
               

               
Conread position:
               
174-526
               

               
Cow position:
               
chr6:8965908-8966260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 105
               

               
Conread position:
               
174-526
               

               
Cow position:
               
chr6:38441001-38441335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
163, 92
               

               
Conread position:
               
174-526
               

               
Cow position:
               
chr6:38771113-38771443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
163, 54
               

               
Conread position:
               
174-530
               

               
Cow position:
               
chr6:6098463-6098099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
134, 69
               

               
Conread position:
               
174-532
               

               
Cow position:
               
chr6:35471707-35471341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
20, 118
               

               
Conread position:
               
174-533
               

               
Cow position:
               
chr6:48567523-48567184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
91, 66
               

               
Conread position:
               
174-534
               

               
Cow position:
               
chr6:6067858-6067530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
321, 62
               

               
Conread position:
               
174-534
               

               
Cow position:
               
chr6:32125886-32126226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
74, 114
               

               
Conread position:
               
174-534
               

               
Cow position:
               
chr6:37149012-37149360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 69
               

               
Conread position:
               
174-537
               

               
Cow position:
               
chr6:40032011-40032364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 32
               

               
Conread position:
               
174-538
               

               
Cow position:
               
chr6:7131052-7130705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
183, 55
               

               
Conread position:
               
174-538
               

               
Cow position:
               
chr6:18049207-18048849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
104, 60
               

               
Conread position:
               
174-539
               

               
Cow position:
               
chr6:7190300-7189942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
99, 93
               

               
Conread position:
               
174-539
               

               
Cow position:
               
chr6:21869826-21869473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
163, 61
               

               
Conread position:
               
174-539
               

               
Cow position:
               
chr6:47574724-47575078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
139, 104
               

               
Conread position:
               
174-539
               

               
Cow position:
               
chr6:47799117-47799469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
165, 44
               

               
Conread position:
               
174-543
               

               
Cow position:
               
chr6:16191485-16191849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
53, 44
               

               
Conread position:
               
174-546
               

               
Cow position:
               
chr6:6400767-6401133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
50, 94
               

               
Conread position:
               
174-546
               

               
Cow position:
               
chr6:37199726-37199357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
28, 154
               

               
Conread position:
               
174-550
               

               
Cow position:
               
chr6:61113569-61113954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 251
               

               
Conread position:
               
174-551
               

               
Cow position:
               
chr6:21110789-21111134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
323, 69
               

               
Conread position:
               
174-557
               

               
Cow position:
               
chr6:55546341-55545981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
160, 10
               

               
Conread position:
               
174-558
               

               
Cow position:
               
chr6:40713683-40713317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
74, 113
               

               
Conread position:
               
174-560
               

               
Cow position:
               
chr6:48187762-48187383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
55, 68
               

               
Conread position:
               
174-565
               

               
Cow position:
               
chr6:53178456-53178827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
68, 102
               

               
Conread position:
               
174-567
               

               
Cow position:
               
chr6:61631800-61631404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 124
               

               
Conread position:
               
174-570
               

               
Cow position:
               
chr6:10176484-10176095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 147
               

               
Conread position:
               
174-570
               

               
Cow position:
               
chr6:53460753-53460368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 101
               

               
Conread position:
               
174-570
               

               
Cow position:
               
chr6:65711646-65712020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
68, 131
               

               
Conread position:
               
174-573
               

               
Cow position:
               
chr6:16700078-16700461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 196
               

               
Conread position:
               
174-573
               

               
Cow position:
               
chr6:23695816-23696206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 62
               

               
Conread position:
               
174-573
               

               
Cow position:
               
chr6:32867387-32867014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
162, 101
               

               
Conread position:
               
174-573
               

               
Cow position:
               
chr6:38641317-38641701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 62
               

               
Conread position:
               
174-573
               

               
Cow position:
               
chr6:43345641-43345233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
52, 198
               

               
Conread position:
               
174-573
               

               
Cow position:
               
chr6:65870843-65871238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
63, 193
               

               
Conread position:
               
174-574
               

               
Cow position:
               
chr6:34475731-34475350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
76, 25
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr6:1770376-1769985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
55, 24
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr6:2896570-2896950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
55, 38
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr6:4468567-4468975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
34, 201
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr6:5114227-5113838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
58, 7
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr6:5609621-5609233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 104
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr6:6060738-6060362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
165, 62
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr6:6201260-6201642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
61, 74
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr6:7103417-7103030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
62, 170
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr6:8562535-8562927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
55, 102
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr6:10332277-10331889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
55, 91
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr6:10400076-10399699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
163, 54
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr6:12092165-12091777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
162, 54
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr6:12927939-12928349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
165, 61
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr6:13367114-13367491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
248, 36
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr6:15242653-15243048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
62, 30
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr6:17414632-17414238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
53, 44
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr6:18447690-18447306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 72
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr6:27851886-27851499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
130, 69
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr6:32121730-32122104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr6:35990404-35990030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
163, 70
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr6:37246611-37246230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
50, 162
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr6:37467720-37467328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 130
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr6:38207677-38207277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 116
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr6:41733446-41733844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 62
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr6:44078340-44078724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
162, 73
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr6:46292519-46292146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
163, 55
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr6:48281814-48282204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 151
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr6:49421958-49421584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr6:50577339-50577727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
61, 115
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr6:50746800-50747209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 27
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr6:51835219-51835607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 61
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr6:52412673-52413071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 188
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr6:53024979-53024602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
36, 80
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr6:54132637-54133020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
165, 50
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr6:54490921-54490537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
98, 54
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr6:55282471-55282081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
61, 93
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr6:56849837-56850226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
162, 55
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr6:58732495-58732091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
52, 189
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr6:59620488-59620865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
101, 133
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr6:60473954-60474344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
99, 139
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr6:63252104-63251712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 139
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr6:65676076-65676453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
68, 131
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr6:65702582-65702200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
44, 51
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr6:67950778-67951167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 62
               

               
Conread position:
               
175-301
               

               
Cow position:
               
chr6:66087775-66087901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
100, 49
               

               
Conread position:
               
175-324
               

               
Cow position:
               
chr6:37783234-37783387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
175-370
               

               
Cow position:
               
chr6:5958201-5958010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
61, 15
               

               
Conread position:
               
175-387
               

               
Cow position:
               
chr6:21587601-21587388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
54, 107
               

               
Conread position:
               
175-402
               

               
Cow position:
               
chr6:47540346-47540571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
51, 103
               

               
Conread position:
               
175-450
               

               
Cow position:
               
chr6:18961703-18961430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
45, 51
               

               
Conread position:
               
175-481
               

               
Cow position:
               
chr6:457006-457293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
164, 79
               

               
Conread position:
               
175-508
               

               
Cow position:
               
chr6:49398796-49398475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
52, 102
               

               
Conread position:
               
175-568
               

               
Cow position:
               
chr6:36196034-36196407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
175-575
               

               
Cow position:
               
chr6:445131-445537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 202
               

               
Conread position:
               
175-575
               

               
Cow position:
               
chr6:19401682-19402054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
162, 53
               

               
Conread position:
               
175-575
               

               
Cow position:
               
chr6:35842477-35842869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 43
               

               
Conread position:
               
175-575
               

               
Cow position:
               
chr6:63720019-63720401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
164, 60
               

               
Conread position:
               
176-320
               

               
Cow position:
               
chr6:51398622-51398764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
176-345
               

               
Cow position:
               
chr6:1703635-1703805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
60, 114
               

               
Conread position:
               
176-356
               

               
Cow position:
               
chr6:61130661-61130475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
72, 116
               

               
Conread position:
               
176-358
               

               
Cow position:
               
chr6:54807044-54807232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
50, 103
               

               
Conread position:
               
176-361
               

               
Cow position:
               
chr6:7824582-7824770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
51, 27
               

               
Conread position:
               
176-361
               

               
Cow position:
               
chr6:31564512-31564332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
161, 65
               

               
Conread position:
               
176-362
               

               
Cow position:
               
chr6:17090416-17090607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
56, 103
               

               
Conread position:
               
176-370
               

               
Cow position:
               
chr6:68049256-68049449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
186, 154
               

               
Conread position:
               
176-371
               

               
Cow position:
               
chr6:57680614-57680414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
49, 190
               

               
Conread position:
               
176-372
               

               
Cow position:
               
chr6:57274290-57274486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
158, 59
               

               
Conread position:
               
176-373
               

               
Cow position:
               
chr6:3929141-3929338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
162, 9
               

               
Conread position:
               
176-373
               

               
Cow position:
               
chr6:48344149-48344350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
53, 114
               

               
Conread position:
               
176-376
               

               
Cow position:
               
chr6:46400584-46400391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
160, 60
               

               
Conread position:
               
176-378
               

               
Cow position:
               
chr6:8318344-8318141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
16, 130
               

               
Conread position:
               
176-379
               

               
Cow position:
               
chr6:44377086-44377293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
51, 38
               

               
Conread position:
               
176-381
               

               
Cow position:
               
chr6:16634399-16634192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
51, 127
               

               
Conread position:
               
176-382
               

               
Cow position:
               
chr6:24515372-24515169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
132, 111
               

               
Conread position:
               
176-390
               

               
Cow position:
               
chr6:6614254-6614473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
54, 104
               

               
Conread position:
               
176-392
               

               
Cow position:
               
chr6:24223340-24223119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
9, 101
               

               
Conread position:
               
176-395
               

               
Cow position:
               
chr6:58073866-58074089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
61, 45
               

               
Conread position:
               
176-429
               

               
Cow position:
               
chr6:31635866-31635622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
31, 8
               

               
Conread position:
               
176-491
               

               
Cow position:
               
chr6:28811173-28810870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
41, 111
               

               
Conread position:
               
176-494
               

               
Cow position:
               
chr6:12652027-12652335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
130, 115
               

               
Conread position:
               
176-495
               

               
Cow position:
               
chr6:55475067-55475387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
121, 136
               

               
Conread position:
               
176-500
               

               
Cow position:
               
chr6:51893684-51893363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
49, 116
               

               
Conread position:
               
176-507
               

               
Cow position:
               
chr6:4864719-4864403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
161, 50
               

               
Conread position:
               
176-510
               

               
Cow position:
               
chr6:8788216-8787890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
132, 73
               

               
Conread position:
               
176-511
               

               
Cow position:
               
chr6:37634610-37634943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
159, 82
               

               
Conread position:
               
176-520
               

               
Cow position:
               
chr6:9452952-9452613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
49, 101
               

               
Conread position:
               
176-526
               

               
Cow position:
               
chr6:53651862-53652203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
60, 101
               

               
Conread position:
               
176-532
               

               
Cow position:
               
chr6:67456524-67456887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
39, 180
               

               
Conread position:
               
176-533
               

               
Cow position:
               
chr6:36652240-36652593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
160, 110
               

               
Conread position:
               
176-534
               

               
Cow position:
               
chr6:59069807-59069449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
53, 114
               

               
Conread position:
               
176-560
               

               
Cow position:
               
chr6:45606629-45606260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
166, 57
               

               
Conread position:
               
176-575
               

               
Cow position:
               
chr6:611382-611752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
54, 121
               

               
Conread position:
               
176-575
               

               
Cow position:
               
chr6:15938031-15937643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 15
               

               
Conread position:
               
176-575
               

               
Cow position:
               
chr6:16765571-16765189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 53
               

               
Conread position:
               
176-575
               

               
Cow position:
               
chr6:17557195-17557584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
53, 118
               

               
Conread position:
               
176-575
               

               
Cow position:
               
chr6:50090462-50090854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
61, 115
               

               
Conread position:
               
177-365
               

               
Cow position:
               
chr6:54293933-54294119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
160, 64
               

               
Conread position:
               
177-374
               

               
Cow position:
               
chr6:13741517-13741721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
98, 182
               

               
Conread position:
               
177-491
               

               
Cow position:
               
chr6:54936399-54936707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
33, 163
               

               
Conread position:
               
177-508
               

               
Cow position:
               
chr6:35435826-35436139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
160, 83
               

               
Conread position:
               
177-512
               

               
Cow position:
               
chr6:1499460-1499789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
71, 100
               

               
Conread position:
               
177-533
               

               
Cow position:
               
chr6:67214563-67214917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
52, 42
               

               
Conread position:
               
178-374
               

               
Cow position:
               
chr6:61137194-61137395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
60, 101
               

               
Conread position:
               
178-520
               

               
Cow position:
               
chr6:47339525-47339199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
160, 50
               

               
Conread position:
               
178-561
               

               
Cow position:
               
chr6:54867334-54867712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 16
               

               
Conread position:
               
178-566
               

               
Cow position:
               
chr6:6063456-6063092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
178-575
               

               
Cow position:
               
chr6:40774525-40774125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
131, 51
               

               
Conread position:
               
178-575
               

               
Cow position:
               
chr6:47305162-47305551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 110
               

               
Conread position:
               
178-575
               

               
Cow position:
               
chr6:67187514-67187890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
158, 32
               

               
Conread position:
               
179-361
               

               
Cow position:
               
chr6:49604507-49604683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
159, 22
               

               
Conread position:
               
179-368
               

               
Cow position:
               
chr6:61575427-61575621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
50, 117
               

               
Conread position:
               
179-369
               

               
Cow position:
               
chr6:60239568-60239378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
53, 99
               

               
Conread position:
               
179-370
               

               
Cow position:
               
chr6:15923175-15922983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
160, 92
               

               
Conread position:
               
179-494
               

               
Cow position:
               
chr6:55040392-55040083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
50, 113
               

               
Conread position:
               
179-501
               

               
Cow position:
               
chr6:52562350-52562042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
50, 115
               

               
Conread position:
               
179-542
               

               
Cow position:
               
chr6:61515374-61515014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
58, 194
               

               
Conread position:
               
179-557
               

               
Cow position:
               
chr6:54430643-54431021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
52, 178
               

               
Conread position:
               
179-574
               

               
Cow position:
               
chr6:19012893-19013271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
129, 70
               

               
Conread position:
               
179-574
               

               
Cow position:
               
chr6:63921808-63922186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
157, 49
               

               
Conread position:
               
179-575
               

               
Cow position:
               
chr6:323486-323093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
22, 117
               

               
Conread position:
               
179-575
               

               
Cow position:
               
chr6:29239768-29240141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
151, 40
               

               
Conread position:
               
179-575
               

               
Cow position:
               
chr6:36202652-36203030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
311, 96
               

               
Conread position:
               
179-575
               

               
Cow position:
               
chr6:54647698-54647289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 46
               

               
Conread position:
               
179-575
               

               
Cow position:
               
chr6:55610415-55610019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
58, 88
               

               
Conread position:
               
180-417
               

               
Cow position:
               
chr6:9838987-9839226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
95, 189
               

               
Conread position:
               
180-534
               

               
Cow position:
               
chr6:59104433-59104773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
273, 89
               

               
Conread position:
               
180-570
               

               
Cow position:
               
chr6:59798493-59798858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
162, 61
               

               
Conread position:
               
180-575
               

               
Cow position:
               
chr6:8125157-8125538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 46
               

               
Conread position:
               
181-575
               

               
Cow position:
               
chr6:60819341-60819724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 107
               

               
Conread position:
               
182-534
               

               
Cow position:
               
chr6:65264708-65264375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
157, 49
               

               
Conread position:
               
183-566
               

               
Cow position:
               
chr6:17334229-17333850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
59, 173
               

               
Conread position:
               
183-575
               

               
Cow position:
               
chr6:47355652-47356035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
337, 92
               

               
Conread position:
               
184-370
               

               
Cow position:
               
chr6:54287909-54288090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
153, 45
               

               
Conread position:
               
184-574
               

               
Cow position:
               
chr6:27888179-27888555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 10
               

               
Conread position:
               
184-575
               

               
Cow position:
               
chr6:39093573-39093954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
155, 59
               

               
Conread position:
               
185-494
               

               
Cow position:
               
chr6:7989586-7989284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
44, 160
               

               
Conread position:
               
185-521
               

               
Cow position:
               
chr6:54991172-54990843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
51, 80
               

               
Conread position:
               
185-573
               

               
Cow position:
               
chr6:15447378-15446986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 95
               

               
Conread position:
               
186-573
               

               
Cow position:
               
chr6:11246595-11246975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 40
               

               
Conread position:
               
186-575
               

               
Cow position:
               
chr6:53453599-53453978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
98, 148
               

               
Conread position:
               
187-394
               

               
Cow position:
               
chr6:58364180-58363970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
50, 100
               

               
Conread position:
               
188-511
               

               
Cow position:
               
chr6:47640604-47640283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
46, 101
               

               
Conread position:
               
188-538
               

               
Cow position:
               
chr6:16764809-16764471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
213, 56
               

               
Conread position:
               
190-373
               

               
Cow position:
               
chr6:40834638-40834450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
39, 89
               

               
Conread position:
               
191-436
               

               
Cow position:
               
chr6:44984162-44984403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
46, 99
               

               
Conread position:
               
191-487
               

               
Cow position:
               
chr6:899454-899169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
148, 84
               

               
Conread position:
               
192-374
               

               
Cow position:
               
chr6:59108779-59108965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
85, 32
               

               
Conread position:
               
192-557
               

               
Cow position:
               
chr6:14914402-14914042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 43
               

               
Conread position:
               
192-575
               

               
Cow position:
               
chr6:15243088-15243471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
28, 98
               

               
Conread position:
               
193-489
               

               
Cow position:
               
chr6:12543095-12542804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
144, 82
               

               
Conread position:
               
193-575
               

               
Cow position:
               
chr6:47699985-47700374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
76, 96
               

               
Conread position:
               
194-417
               

               
Cow position:
               
chr6:633522-633303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
35, 98
               

               
Conread position:
               
194-429
               

               
Cow position:
               
chr6:5445462-5445689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
41, 96
               

               
Conread position:
               
195-488
               

               
Cow position:
               
chr6:55763694-55763978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
195-575
               

               
Cow position:
               
chr6:67430049-67429658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
53, 97
               

               
Conread position:
               
196-552
               

               
Cow position:
               
chr6:48112045-48112382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
143, 39
               

               
Conread position:
               
196-575
               

               
Cow position:
               
chr6:34251446-34251089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
79, 40
               

               
Conread position:
               
197-575
               

               
Cow position:
               
chr6:19264658-19264289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
34, 98
               

               
Conread position:
               
198-571
               

               
Cow position:
               
chr6:3595637-3595999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
85, 51
               

               
Conread position:
               
198-575
               

               
Cow position:
               
chr6:7128557-7128195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
141, 55
               

               
Conread position:
               
199-534
               

               
Cow position:
               
chr6:67323160-67323480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
199-573
               

               
Cow position:
               
chr6:19755233-19754871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
51, 90
               

               
Conread position:
               
200-575
               

               
Cow position:
               
chr6:50984069-50984434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 89
               

               
Conread position:
               
200-575
               

               
Cow position:
               
chr6:60739860-60740219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
137, 75
               

               
Conread position:
               
201-575
               

               
Cow position:
               
chr6:57546370-57546017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
26, 76
               

               
Conread position:
               
202-488
               

               
Cow position:
               
chr6:61608354-61608637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
27, 86
               

               
Conread position:
               
203-575
               

               
Cow position:
               
chr6:4692136-4691756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 73
               

               
Conread position:
               
204-570
               

               
Cow position:
               
chr6:58370593-58370951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
46, 20
               

               
Conread position:
               
207-567
               

               
Cow position:
               
chr6:57571325-57571679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
21, 82
               

               
Conread position:
               
207-575
               

               
Cow position:
               
chr6:38609819-38610183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
7, 82
               

               
Conread position:
               
209-402
               

               
Cow position:
               
chr6:602947-603135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
87, 33
               

               
Conread position:
               
209-570
               

               
Cow position:
               
chr6:19344958-19345305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
34, 81
               

               
Conread position:
               
210-365
               

               
Cow position:
               
chr6:19351299-19351144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
127, 64
               

               
Conread position:
               
210-532
               

               
Cow position:
               
chr6:582412-582104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
129, 19
               

               
Conread position:
               
210-534
               

               
Cow position:
               
chr6:46283143-46282832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
143, 26
               

               
Conread position:
               
212-391
               

               
Cow position:
               
chr6:29266062-29266240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
125, 35
               

               
Conread position:
               
212-532
               

               
Cow position:
               
chr6:16316163-16316485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 38
               

               
Conread position:
               
212-534
               

               
Cow position:
               
chr6:9219130-9219437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
239, 76
               

               
Conread position:
               
212-537
               

               
Cow position:
               
chr6:4559446-4559137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
124, 32
               

               
Conread position:
               
212-575
               

               
Cow position:
               
chr6:17313587-17313947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
17, 79
               

               
Conread position:
               
212-575
               

               
Cow position:
               
chr6:19996477-19996824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
19, 36
               

               
Conread position:
               
212-575
               

               
Cow position:
               
chr6:54036278-54035931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
213-336
               

               
Cow position:
               
chr6:50509536-50509655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
219-539
               

               
Cow position:
               
chr6:21234909-21235219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
109, 5
               

               
Conread position:
               
219-552
               

               
Cow position:
               
chr6:45388195-45388512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
186, 5
               

               
Conread position:
               
219-575
               

               
Cow position:
               
chr6:21399888-21399545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
64, 5
               

               
Conread position:
               
219-575
               

               
Cow position:
               
chr6:38640096-38640443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
120, 5
               

               
Conread position:
               
219-575
               

               
Cow position:
               
chr6:47833249-47832903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
64, 5
               

               
Conread position:
               
219-575
               

               
Cow position:
               
chr6:48988301-48988643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
64, 121
               

               
Conread position:
               
219-575
               

               
Cow position:
               
chr6:67618090-67617738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
205, 8
               

               
Conread position:
               
220-530
               

               
Cow position:
               
chr6:3081265-3080949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
63, 90
               

               
Conread position:
               
220-567
               

               
Cow position:
               
chr6:30123327-30122966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
116, 68
               

               
Conread position:
               
220-575
               

               
Cow position:
               
chr6:43135079-43134731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
47, 95
               

               
Conread position:
               
223-575
               

               
Cow position:
               
chr6:62669742-62670080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
287, 24
               

               
Conread position:
               
224-575
               

               
Cow position:
               
chr6:53841630-53841294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
115, 61
               

               
Conread position:
               
225-356
               

               
Cow position:
               
chr6:60667291-60667422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
110, 22
               

               
Conread position:
               
226-372
               

               
Cow position:
               
chr6:358019-357870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
226-551
               

               
Cow position:
               
chr6:1371356-1371038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
57, 21
               

               
Conread position:
               
228-567
               

               
Cow position:
               
chr6:35725968-35726291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
111, 60
               

               
Conread position:
               
229-494
               

               
Cow position:
               
chr6:60446134-60446391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
80, 46
               

               
Conread position:
               
229-504
               

               
Cow position:
               
chr6:20206150-20206416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
46, 29
               

               
Conread position:
               
231-575
               

               
Cow position:
               
chr6:50467011-50467347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
232-567
               

               
Cow position:
               
chr6:36189574-36189901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
233-367
               

               
Cow position:
               
chr6:10225761-10225628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
106, 54
               

               
Conread position:
               
236-520
               

               
Cow position:
               
chr6:54573124-54573417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
103, 51
               

               
Conread position:
               
236-573
               

               
Cow position:
               
chr6:25615221-25614883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
102, 26
               

               
Conread position:
               
236-573
               

               
Cow position:
               
chr6:32287519-32287838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
99, 49
               

               
Conread position:
               
236-575
               

               
Cow position:
               
chr6:16261667-16261990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
47, 19
               

               
Conread position:
               
237-573
               

               
Cow position:
               
chr6:22850363-22850045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
238-570
               

               
Cow position:
               
chr6:54854132-54854454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
170, 50
               

               
Conread position:
               
239-539
               

               
Cow position:
               
chr6:58597620-58597330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
187, 36
               

               
Conread position:
               
239-567
               

               
Cow position:
               
chr6:21514735-21514405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
36, 136
               

               
Conread position:
               
244-575
               

               
Cow position:
               
chr6:10039610-10039935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
40, 78
               

               
Conread position:
               
244-575
               

               
Cow position:
               
chr6:51526380-51526700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
244-575
               

               
Cow position:
               
chr6:55209445-55209769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
39, 91
               

               
Conread position:
               
245-526
               

               
Cow position:
               
chr6:55161357-55161633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
91, 10
               

               
Conread position:
               
245-575
               

               
Cow position:
               
chr6:16266609-16266938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
38, 113
               

               
Conread position:
               
247-372
               

               
Cow position:
               
chr6:61644943-61644814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
40, 5
               

               
Conread position:
               
248-524
               

               
Cow position:
               
chr6:54809499-54809227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
10, 41
               

               
Conread position:
               
250-511
               

               
Cow position:
               
chr6:59603312-59603060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
89, 48
               

               
Conread position:
               
250-534
               

               
Cow position:
               
chr6:62371286-62371010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
25, 111
               

               
Conread position:
               
250-575
               

               
Cow position:
               
chr6:46173363-46173049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
31, 92
               

               
Conread position:
               
251-573
               

               
Cow position:
               
chr6:54208243-54207925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
85, 106
               

               
Conread position:
               
252-531
               

               
Cow position:
               
chr6:17549084-17548807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
85, 22
               

               
Conread position:
               
252-575
               

               
Cow position:
               
chr6:17704716-17705043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
254-538
               

               
Cow position:
               
chr6:3592300-3592572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
85, 34
               

               
Conread position:
               
254-573
               

               
Cow position:
               
chr6:52657826-52658161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
255-552
               

               
Cow position:
               
chr6:58608547-58608253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
9, 90
               

               
Conread position:
               
255-575
               

               
Cow position:
               
chr6:27240106-27239795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
176, 20
               

               
Conread position:
               
263-575
               

               
Cow position:
               
chr6:19292706-19293007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
74, 24
               

               
Conread position:
               
263-575
               

               
Cow position:
               
chr6:62929404-62929707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
20, 41
               

               
Conread position:
               
264-575
               

               
Cow position:
               
chr6:44867632-44867337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
11, 25
               

               
Conread position:
               
267-575
               

               
Cow position:
               
chr6:24110196-24110493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 59
               

               
Conread position:
               
270-575
               

               
Cow position:
               
chr6:24536629-24536317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
69, 122
               

               
Conread position:
               
272-567
               

               
Cow position:
               
chr6:37395492-37395202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
67, 19
               

               
Conread position:
               
274-567
               

               
Cow position:
               
chr6:67281814-67282092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
80, 65
               

               
Conread position:
               
276-575
               

               
Cow position:
               
chr6:22525252-22525535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
277-567
               

               
Cow position:
               
chr6:2153671-2153395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
62, 17
               

               
Conread position:
               
277-575
               

               
Cow position:
               
chr6:5330335-5330623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
62, 28
               

               
Conread position:
               
277-575
               

               
Cow position:
               
chr6:62437336-62437626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
62, 23
               

               
Conread position:
               
279-575
               

               
Cow position:
               
chr6:13565006-13565296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
57, 84
               

               
Conread position:
               
279-575
               

               
Cow position:
               
chr6:23025190-23024889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
57, 12
               

               
Conread position:
               
280-560
               

               
Cow position:
               
chr6:24339207-24339482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
55, 33
               

               
Conread position:
               
282-575
               

               
Cow position:
               
chr6:46462473-46462172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
56, 31
               

               
Conread position:
               
285-521
               

               
Cow position:
               
chr6:39137789-39138033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
286-521
               

               
Cow position:
               
chr6:54185418-54185184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
51, 68
               

               
Conread position:
               
286-521
               

               
Cow position:
               
chr6:54192127-54192362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
51, 102
               

               
Conread position:
               
288-575
               

               
Cow position:
               
chr6:32043783-32044059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
21, 26
               

               
Conread position:
               
294-575
               

               
Cow position:
               
chr6:5845235-5844959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
42, 62
               

               
Conread position:
               
298-573
               

               
Cow position:
               
chr6:51530245-51529978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
119, 47
               

               
Conread position:
               
313-575
               

               
Cow position:
               
chr6:31806978-31806716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
23, 50
               

               
Conread position:
               
315-567
               

               
Cow position:
               
chr6:7801436-7801194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
24, 56
               

               
Conread position:
               
323-573
               

               
Cow position:
               
chr6:67728338-67728585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
15, 36
               

               
Conread position:
               
330-575
               

               
Cow position:
               
chr6:50862916-50863156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
117, 24
               

               
Conread position:
               
335-567
               

               
Cow position:
               
chr6:35727822-35728054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
93, 29
               

               
Conread position:
               
336-567
               

               
Cow position:
               
chr6:47958794-47959010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
336-568
               

               
Cow position:
               
chr6:57089178-57089406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
88, 26
               

               
Conread position:
               
350-570
               

               
Cow position:
               
chr6:12761268-12761485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
350-570
               

               
Cow position:
               
chr6:21467275-21467061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
354-575
               

               
Cow position:
               
chr6:47782852-47783076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
359-543
               

               
Cow position:
               
chr6:60516822-60517003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
89, 59
               

               
Conread position:
               
359-575
               

               
Cow position:
               
chr6:47540853-47540631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
359-575
               

               
Cow position:
               
chr6:68816162-68816380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
17, 36
               

               
Conread position:
               
360-560
               

               
Cow position:
               
chr6:55502764-55502967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
149, 17
               

               
Conread position:
               
360-567
               

               
Cow position:
               
chr6:35319136-35318932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
360-573
               

               
Cow position:
               
chr6:55297097-55296885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
360-575
               

               
Cow position:
               
chr6:3329985-3330205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
36, 19
               

               
Conread position:
               
360-575
               

               
Cow position:
               
chr6:57079419-57079635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
361-575
               

               
Cow position:
               
chr6:48379616-48379402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
361-575
               

               
Cow position:
               
chr6:53145684-53145471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
48, 16
               

               
Conread position:
               
364-575
               

               
Cow position:
               
chr6:24183558-24183347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
367-575
               

               
Cow position:
               
chr6:54831478-54831687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
14, 137
               

               
Conread position:
               
367-575
               

               
Cow position:
               
chr6:67451367-67451159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
369-567
               

               
Cow position:
               
chr6:58304420-58304617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
369-575
               

               
Cow position:
               
chr6:26155153-26155356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
12, 146
               

               
Conread position:
               
370-575
               

               
Cow position:
               
chr6:16380552-16380756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
372-565
               

               
Cow position:
               
chr6:61681086-61681277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
142, 0
               
UCSC Genome Browser

               
Conread position:
               
373-573
               

               
Cow position:
               
chr6:2584952-2585148 (view  custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
150, 0
               
UCSC Genome Browser

               
               
               
Conread position:
375-575

               
               
               
Cow position:
chr6:50504468-50504665 (view  custom track)

               
               
               
Alignm length:
201

               
               
               
Alignm identity:
136

               
               
               
Alignm E-value:
4e-22

               
               
               
Alignm gaps (pig, cow):
160, 0
UCSC Genome Browser

               
               
               
Conread position:
376-570

               
               
               
Cow position:
chr6:31865111-31865299 (view  custom track)

               
               
               
Alignm length:
195

               
               
               
Alignm identity:
140

               
               
               
Alignm E-value:
7e-27

               
               
               
Alignm gaps (pig, cow):
33, 0

               
               
               Conread position:377-566
               
               
               Cow position:chr6:48435849-48436032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:377-574
               
               
               Cow position:chr6:32453399-32453595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):42, 56

               
               
               Conread position:377-575
               
               
               Cow position:chr6:41014965-41014765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):155, 0

               
               
               Conread position:377-575
               
               
               Cow position:chr6:48097591-48097391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):7, 164

               
               
               Conread position:377-575
               
               
               Cow position:chr6:56986634-56986439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:379-575
               
               
               Cow position:chr6:23110184-23109982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:380-571
               
               
               Cow position:chr6:28851990-28852181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:388-573
               
               
               Cow position:chr6:67574412-67574597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):19, 50

               
               
               Conread position:388-575
               
               
               Cow position:chr6:64429172-64428985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):7, 70

               
               
               Conread position:390-575
               
               
               Cow position:chr6:54846253-54846067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:394-567
               
               
               Cow position:chr6:66259760-66259938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):30, 44

               
               
               Conread position:394-573
               
               
               Cow position:chr6:50771328-50771153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:395-575
               
               
               Cow position:chr6:8369456-8369633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:396-575
               
               
               Cow position:chr6:22876898-22876719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):43, 22

               
               
               Conread position:405-575
               
               
               Cow position:chr6:15058418-15058584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:405-575
               
               
               Cow position:chr6:15587553-15587383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:405-575
               
               
               Cow position:chr6:24776180-24776348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:406-575
               
               
               Cow position:chr6:20075838-20076006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):9, 13

               
               
               Conread position:406-575
               
               
               Cow position:chr6:36225151-36225319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:411-575
               
               
               Cow position:chr6:23058259-23058423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:411-575
               
               
               Cow position:chr6:26408455-26408293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:411-575
               
               
               Cow position:chr6:27636362-27636526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:412-560
               
               
               Cow position:chr6:58076442-58076590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:413-575
               
               
               Cow position:chr6:45160008-45159846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:414-575
               
               
               Cow position:chr6:61644808-61644647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):13, 23

               
               
               Conread position:418-575
               
               
               Cow position:chr6:18440423-18440266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:420-575
               
               
               Cow position:chr6:54820890-54821043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:421-570
               
               
               Cow position:chr6:21052392-21052242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:421-575
               
               
               Cow position:chr6:30895934-30895781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:421-575
               
               
               Cow position:chr6:58697574-58697420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:424-575
               
               
               Cow position:chr6:31471136-31471288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:436-567
               
               
               Cow position:chr6:66293557-66293688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:436-573
               
               
               Cow position:chr6:35985064-35984927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:436-575
               
               
               Cow position:chr6:5445740-5445877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:436-575
               
               
               Cow position:chr6:8187117-8186978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:436-575
               
               
               Cow position:chr6:19936497-19936359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:436-575
               
               
               Cow position:chr6:43906611-43906472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:438-575
               
               
               Cow position:chr6:62224496-62224633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):72, 114

               
               
               Conread position:439-573
               
               
               Cow position:chr6:49685893-49686027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:439-574
               
               
               Cow position:chr6:62805718-62805853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:444-573
               
               
               Cow position:chr6:16411691-16411820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:444-575
               
               
               Cow position:chr6:44544068-44543938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:446-575
               
               
               Cow position:chr6:16137688-16137558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:451-575
               
               
               Cow position:chr6:31928724-31928848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:458-575
               
               
               Cow position:chr6:23381574-23381457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:92
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:466-575
               
               
               Cow position:chr6:57143594-57143485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:88
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0
Show alignments to all cow chromosomes.