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Cow genome map

           
Conread name:
           
rcmu27_f11.y1
        

               
Conread position:
               
119-502
               

               
Cow position:
               
chr9:39578030-39577669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
156, 13
               

               
Conread position:
               
120-289
               

               
Cow position:
               
chr9:54666207-54666039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
103, 27
               

               
Conread position:
               
143-539
               

               
Cow position:
               
chr9:3782643-3782263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
78, 31
               

               
Conread position:
               
146-519
               

               
Cow position:
               
chr9:62357254-62357616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
187, 28
               

               
Conread position:
               
147-304
               

               
Cow position:
               
chr9:18140019-18140175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
118, 27
               

               
Conread position:
               
147-328
               

               
Cow position:
               
chr9:31662745-31662561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
85, 12
               

               
Conread position:
               
147-337
               

               
Cow position:
               
chr9:3807461-3807652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
82, 27
               

               
Conread position:
               
147-338
               

               
Cow position:
               
chr9:37528732-37528541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
82, 27
               

               
Conread position:
               
147-346
               

               
Cow position:
               
chr9:35101143-35100947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
147-355
               

               
Cow position:
               
chr9:20989178-20989388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
133, 27
               

               
Conread position:
               
147-365
               

               
Cow position:
               
chr9:42998195-42998410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
190, 27
               

               
Conread position:
               
147-365
               

               
Cow position:
               
chr9:57951053-57951266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
188, 29
               

               
Conread position:
               
147-376
               

               
Cow position:
               
chr9:5621754-5621991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
72, 29
               

               
Conread position:
               
147-389
               

               
Cow position:
               
chr9:18072842-18073076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
178, 27
               

               
Conread position:
               
147-414
               

               
Cow position:
               
chr9:18002673-18002936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 27
               

               
Conread position:
               
147-442
               

               
Cow position:
               
chr9:5532228-5531935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
82, 16
               

               
Conread position:
               
147-508
               

               
Cow position:
               
chr9:46316512-46316857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
182, 27
               

               
Conread position:
               
147-517
               

               
Cow position:
               
chr9:5763354-5763717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
82, 27
               

               
Conread position:
               
147-519
               

               
Cow position:
               
chr9:5218904-5219259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
288, 16
               

               
Conread position:
               
147-526
               

               
Cow position:
               
chr9:26404065-26403692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 27
               

               
Conread position:
               
147-534
               

               
Cow position:
               
chr9:7410058-7409664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 27
               

               
Conread position:
               
147-570
               

               
Cow position:
               
chr9:44831778-44832183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
102, 87
               

               
Conread position:
               
147-573
               

               
Cow position:
               
chr9:25964548-25964978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
73, 27
               

               
Conread position:
               
147-573
               

               
Cow position:
               
chr9:52407446-52407030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 27
               

               
Conread position:
               
147-575
               

               
Cow position:
               
chr9:15215405-15215830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 27
               

               
Conread position:
               
147-575
               

               
Cow position:
               
chr9:20900855-20901258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
130, 16
               

               
Conread position:
               
147-575
               

               
Cow position:
               
chr9:28726450-28726869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 27
               

               
Conread position:
               
147-575
               

               
Cow position:
               
chr9:29006836-29006419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 27
               

               
Conread position:
               
147-575
               

               
Cow position:
               
chr9:42498105-42497688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
128, 27
               

               
Conread position:
               
149-284
               

               
Cow position:
               
chr9:48017549-48017682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
155-538
               

               
Cow position:
               
chr9:59386509-59386873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
103, 19
               

               
Conread position:
               
155-539
               

               
Cow position:
               
chr9:33681950-33681550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
82, 13
               

               
Conread position:
               
155-550
               

               
Cow position:
               
chr9:51204993-51204614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
86, 19
               

               
Conread position:
               
155-571
               

               
Cow position:
               
chr9:44833702-44834101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
128, 17
               

               
Conread position:
               
155-575
               

               
Cow position:
               
chr9:9753126-9753543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 74
               

               
Conread position:
               
158-356
               

               
Cow position:
               
chr9:38875309-38875509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
76, 16
               

               
Conread position:
               
158-519
               

               
Cow position:
               
chr9:29684412-29684058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
57, 16
               

               
Conread position:
               
160-514
               

               
Cow position:
               
chr9:7363293-7362946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
15, 154
               

               
Conread position:
               
161-575
               

               
Cow position:
               
chr9:15982812-15983215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
16, 184
               

               
Conread position:
               
161-575
               

               
Cow position:
               
chr9:58979663-58979265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
63, 13
               

               
Conread position:
               
162-567
               

               
Cow position:
               
chr9:55796020-55795626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
80, 113
               

               
Conread position:
               
163-365
               

               
Cow position:
               
chr9:34000355-34000564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
163-370
               

               
Cow position:
               
chr9:1984261-1984473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
57, 11
               

               
Conread position:
               
163-370
               

               
Cow position:
               
chr9:26391028-26390819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
174, 11
               

               
Conread position:
               
163-371
               

               
Cow position:
               
chr9:48343863-48343653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
9, 14
               

               
Conread position:
               
163-372
               

               
Cow position:
               
chr9:40542374-40542171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
174, 11
               

               
Conread position:
               
163-373
               

               
Cow position:
               
chr9:6225192-6225404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
174, 11
               

               
Conread position:
               
163-405
               

               
Cow position:
               
chr9:4928891-4928653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
72, 11
               

               
Conread position:
               
163-416
               

               
Cow position:
               
chr9:1712225-1712460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
174, 11
               

               
Conread position:
               
163-426
               

               
Cow position:
               
chr9:21840336-21840080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
173, 123
               

               
Conread position:
               
163-483
               

               
Cow position:
               
chr9:35375684-35375375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
177, 11
               

               
Conread position:
               
163-494
               

               
Cow position:
               
chr9:28948112-28947800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
325, 11
               

               
Conread position:
               
163-508
               

               
Cow position:
               
chr9:34901855-34902177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
56, 11
               

               
Conread position:
               
163-538
               

               
Cow position:
               
chr9:22696477-22696117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 11
               

               
Conread position:
               
163-543
               

               
Cow position:
               
chr9:26086328-26085943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 130
               

               
Conread position:
               
163-567
               

               
Cow position:
               
chr9:42445721-42446127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
174, 84
               

               
Conread position:
               
163-573
               

               
Cow position:
               
chr9:13205310-13205710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
176, 11
               

               
Conread position:
               
163-575
               

               
Cow position:
               
chr9:9723621-9724019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 46
               

               
Conread position:
               
163-575
               

               
Cow position:
               
chr9:24887460-24887065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
58, 11
               

               
Conread position:
               
163-575
               

               
Cow position:
               
chr9:28747261-28747658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 97
               

               
Conread position:
               
163-575
               

               
Cow position:
               
chr9:33598241-33597833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
174, 11
               

               
Conread position:
               
163-575
               

               
Cow position:
               
chr9:37017145-37016759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
406, 112
               

               
Conread position:
               
163-575
               

               
Cow position:
               
chr9:44822042-44822462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 11
               

               
Conread position:
               
163-575
               

               
Cow position:
               
chr9:50976985-50977396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 145
               

               
Conread position:
               
165-352
               

               
Cow position:
               
chr9:4128526-4128713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
172, 9
               

               
Conread position:
               
165-361
               

               
Cow position:
               
chr9:52001265-52001066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
110, 9
               

               
Conread position:
               
165-370
               

               
Cow position:
               
chr9:29841145-29840937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
83, 9
               

               
Conread position:
               
165-374
               

               
Cow position:
               
chr9:49983434-49983638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
172, 9
               

               
Conread position:
               
165-429
               

               
Cow position:
               
chr9:40105735-40105470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
64, 9
               

               
Conread position:
               
165-504
               

               
Cow position:
               
chr9:44914837-44915169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 9
               

               
Conread position:
               
165-570
               

               
Cow position:
               
chr9:5836420-5836010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
92, 9
               

               
Conread position:
               
165-575
               

               
Cow position:
               
chr9:10144214-10144625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
64, 9
               

               
Conread position:
               
165-575
               

               
Cow position:
               
chr9:18215651-18216052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
116, 9
               

               
Conread position:
               
165-575
               

               
Cow position:
               
chr9:31347212-31346809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 9
               

               
Conread position:
               
165-575
               

               
Cow position:
               
chr9:34697037-34697442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
67, 9
               

               
Conread position:
               
168-537
               

               
Cow position:
               
chr9:38614710-38615067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
115, 42
               

               
Conread position:
               
168-571
               

               
Cow position:
               
chr9:52619909-52619510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
23, 155
               

               
Conread position:
               
169-337
               

               
Cow position:
               
chr9:41412058-41412223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
106, 135
               

               
Conread position:
               
169-539
               

               
Cow position:
               
chr9:62442536-62442183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
168, 5
               

               
Conread position:
               
169-574
               

               
Cow position:
               
chr9:20848191-20847802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
56, 111
               

               
Conread position:
               
169-575
               

               
Cow position:
               
chr9:33119627-33120031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 120
               

               
Conread position:
               
171-575
               

               
Cow position:
               
chr9:56087816-56088218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
79, 18
               

               
Conread position:
               
172-384
               

               
Cow position:
               
chr9:28735730-28735514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
166, 103
               

               
Conread position:
               
173-539
               

               
Cow position:
               
chr9:5594751-5594395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
169, 114
               

               
Conread position:
               
173-575
               

               
Cow position:
               
chr9:20816100-20815726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
166, 77
               

               
Conread position:
               
173-575
               

               
Cow position:
               
chr9:52689373-52689754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
69, 132
               

               
Conread position:
               
173-575
               

               
Cow position:
               
chr9:63905353-63905755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
56, 171
               

               
Conread position:
               
174-301
               

               
Cow position:
               
chr9:20237757-20237885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
11, 15
               

               
Conread position:
               
174-304
               

               
Cow position:
               
chr9:18008617-18008742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
174-320
               

               
Cow position:
               
chr9:25969595-25969448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
174-354
               

               
Cow position:
               
chr9:1855530-1855335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
55, 117
               

               
Conread position:
               
174-354
               

               
Cow position:
               
chr9:10308757-10308940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
32, 78
               

               
Conread position:
               
174-355
               

               
Cow position:
               
chr9:24726428-24726610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
106, 69
               

               
Conread position:
               
174-356
               

               
Cow position:
               
chr9:33100890-33101071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
64, 101
               

               
Conread position:
               
174-356
               

               
Cow position:
               
chr9:37069319-37069502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
163, 101
               

               
Conread position:
               
174-356
               

               
Cow position:
               
chr9:42585376-42585564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
149, 29
               

               
Conread position:
               
174-358
               

               
Cow position:
               
chr9:20318827-20319015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
101, 59
               

               
Conread position:
               
174-358
               

               
Cow position:
               
chr9:22227836-22228018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
134, 62
               

               
Conread position:
               
174-358
               

               
Cow position:
               
chr9:25958664-25958485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
166, 22
               

               
Conread position:
               
174-362
               

               
Cow position:
               
chr9:3924866-3924686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
181, 55
               

               
Conread position:
               
174-362
               

               
Cow position:
               
chr9:5399969-5399788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
165, 101
               

               
Conread position:
               
174-362
               

               
Cow position:
               
chr9:32732436-32732628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
104, 69
               

               
Conread position:
               
174-365
               

               
Cow position:
               
chr9:9491043-9490849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
101, 45
               

               
Conread position:
               
174-368
               

               
Cow position:
               
chr9:27697480-27697672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
164, 86
               

               
Conread position:
               
174-368
               

               
Cow position:
               
chr9:45170919-45171112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
163, 50
               

               
Conread position:
               
174-370
               

               
Cow position:
               
chr9:16218393-16218594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
50, 108
               

               
Conread position:
               
174-370
               

               
Cow position:
               
chr9:53602663-53602478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
164, 69
               

               
Conread position:
               
174-370
               

               
Cow position:
               
chr9:58439531-58439727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
62, 88
               

               
Conread position:
               
174-372
               

               
Cow position:
               
chr9:1952019-1952219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
163, 101
               

               
Conread position:
               
174-372
               

               
Cow position:
               
chr9:41995964-41995760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
51, 105
               

               
Conread position:
               
174-372
               

               
Cow position:
               
chr9:54997773-54997979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
51, 101
               

               
Conread position:
               
174-373
               

               
Cow position:
               
chr9:41653039-41652836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
55, 105
               

               
Conread position:
               
174-373
               

               
Cow position:
               
chr9:54610981-54611185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
55, 105
               

               
Conread position:
               
174-374
               

               
Cow position:
               
chr9:35305870-35306069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
163, 61
               

               
Conread position:
               
174-374
               

               
Cow position:
               
chr9:64516846-64517050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
63, 17
               

               
Conread position:
               
174-378
               

               
Cow position:
               
chr9:36623202-36623399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
174-392
               

               
Cow position:
               
chr9:30664528-30664748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
55, 121
               

               
Conread position:
               
174-402
               

               
Cow position:
               
chr9:29034789-29035006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
163, 55
               

               
Conread position:
               
174-416
               

               
Cow position:
               
chr9:20738952-20738712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
106, 73
               

               
Conread position:
               
174-417
               

               
Cow position:
               
chr9:23028044-23027819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
143, 55
               

               
Conread position:
               
174-417
               

               
Cow position:
               
chr9:36999811-37000046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
163, 99
               

               
Conread position:
               
174-424
               

               
Cow position:
               
chr9:22361265-22361018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
49, 105
               

               
Conread position:
               
174-429
               

               
Cow position:
               
chr9:30749335-30749586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
162, 184
               

               
Conread position:
               
174-446
               

               
Cow position:
               
chr9:8868886-8869157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
57, 146
               

               
Conread position:
               
174-460
               

               
Cow position:
               
chr9:9416157-9416423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
174-461
               

               
Cow position:
               
chr9:36827375-36827106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
174-462
               

               
Cow position:
               
chr9:38344144-38343860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
72, 105
               

               
Conread position:
               
174-467
               

               
Cow position:
               
chr9:17929022-17928722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
57, 202
               

               
Conread position:
               
174-471
               

               
Cow position:
               
chr9:47472946-47472647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
61, 182
               

               
Conread position:
               
174-472
               

               
Cow position:
               
chr9:41789528-41789244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
163, 15
               

               
Conread position:
               
174-486
               

               
Cow position:
               
chr9:35904501-35904799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
163, 68
               

               
Conread position:
               
174-487
               

               
Cow position:
               
chr9:22114383-22114690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
75, 61
               

               
Conread position:
               
174-490
               

               
Cow position:
               
chr9:6089347-6089031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
100, 50
               

               
Conread position:
               
174-495
               

               
Cow position:
               
chr9:8534433-8534753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 197
               

               
Conread position:
               
174-507
               

               
Cow position:
               
chr9:23430892-23431222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
58, 105
               

               
Conread position:
               
174-508
               

               
Cow position:
               
chr9:5319879-5319546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
163, 101
               

               
Conread position:
               
174-508
               

               
Cow position:
               
chr9:5509974-5509650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
62, 104
               

               
Conread position:
               
174-508
               

               
Cow position:
               
chr9:55890059-55889739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
58, 135
               

               
Conread position:
               
174-509
               

               
Cow position:
               
chr9:6880020-6879702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
55, 105
               

               
Conread position:
               
174-512
               

               
Cow position:
               
chr9:50076316-50075984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
54, 109
               

               
Conread position:
               
174-512
               

               
Cow position:
               
chr9:62657042-62656723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
127, 50
               

               
Conread position:
               
174-515
               

               
Cow position:
               
chr9:5226914-5227258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
55, 186
               

               
Conread position:
               
174-516
               

               
Cow position:
               
chr9:32371510-32371835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
18, 105
               

               
Conread position:
               
174-516
               

               
Cow position:
               
chr9:54716372-54716687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
163, 10
               

               
Conread position:
               
174-520
               

               
Cow position:
               
chr9:38961188-38961516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
165, 55
               

               
Conread position:
               
174-520
               

               
Cow position:
               
chr9:43871222-43870887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
101, 40
               

               
Conread position:
               
174-520
               

               
Cow position:
               
chr9:55084047-55084389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 117
               

               
Conread position:
               
174-521
               

               
Cow position:
               
chr9:5268806-5268464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
55, 160
               

               
Conread position:
               
174-521
               

               
Cow position:
               
chr9:7634517-7634182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
160, 52
               

               
Conread position:
               
174-522
               

               
Cow position:
               
chr9:19714319-19713990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
174-523
               

               
Cow position:
               
chr9:45756607-45756273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
55, 14
               

               
Conread position:
               
174-524
               

               
Cow position:
               
chr9:17310312-17310654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
101, 45
               

               
Conread position:
               
174-526
               

               
Cow position:
               
chr9:11192918-11193263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
58, 10
               

               
Conread position:
               
174-526
               

               
Cow position:
               
chr9:22318588-22318258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
165, 54
               

               
Conread position:
               
174-526
               

               
Cow position:
               
chr9:44467099-44467434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
62, 105
               

               
Conread position:
               
174-526
               

               
Cow position:
               
chr9:61997345-61997697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
51, 105
               

               
Conread position:
               
174-530
               

               
Cow position:
               
chr9:49982847-49983187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
55, 134
               

               
Conread position:
               
174-530
               

               
Cow position:
               
chr9:64155606-64155951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
55, 116
               

               
Conread position:
               
174-532
               

               
Cow position:
               
chr9:5246099-5245754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
232, 54
               

               
Conread position:
               
174-532
               

               
Cow position:
               
chr9:26434817-26435156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
163, 60
               

               
Conread position:
               
174-533
               

               
Cow position:
               
chr9:18216850-18217200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
53, 115
               

               
Conread position:
               
174-534
               

               
Cow position:
               
chr9:4646078-4646427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
143, 75
               

               
Conread position:
               
174-534
               

               
Cow position:
               
chr9:22443361-22443728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 197
               

               
Conread position:
               
174-534
               

               
Cow position:
               
chr9:31078832-31079181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
62, 92
               

               
Conread position:
               
174-534
               

               
Cow position:
               
chr9:64559637-64559984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 69
               

               
Conread position:
               
174-536
               

               
Cow position:
               
chr9:55074885-55075231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
101, 54
               

               
Conread position:
               
174-538
               

               
Cow position:
               
chr9:1520480-1520845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
55, 202
               

               
Conread position:
               
174-538
               

               
Cow position:
               
chr9:10877616-10877994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
77, 328
               

               
Conread position:
               
174-538
               

               
Cow position:
               
chr9:18342973-18342627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
174-538
               

               
Cow position:
               
chr9:31814128-31814492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
103, 79
               

               
Conread position:
               
174-538
               

               
Cow position:
               
chr9:33940857-33940500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 185
               

               
Conread position:
               
174-539
               

               
Cow position:
               
chr9:5501101-5500745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
163, 62
               

               
Conread position:
               
174-539
               

               
Cow position:
               
chr9:5756753-5757094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
323, 111
               

               
Conread position:
               
174-539
               

               
Cow position:
               
chr9:9461405-9461761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
163, 101
               

               
Conread position:
               
174-539
               

               
Cow position:
               
chr9:36445872-36445513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
163, 27
               

               
Conread position:
               
174-539
               

               
Cow position:
               
chr9:54681752-54681402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 75
               

               
Conread position:
               
174-540
               

               
Cow position:
               
chr9:21888419-21888060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 190
               

               
Conread position:
               
174-540
               

               
Cow position:
               
chr9:54528765-54528405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
58, 92
               

               
Conread position:
               
174-546
               

               
Cow position:
               
chr9:17410934-17411307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
101, 55
               

               
Conread position:
               
174-546
               

               
Cow position:
               
chr9:39681606-39681226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
54, 30
               

               
Conread position:
               
174-551
               

               
Cow position:
               
chr9:9199534-9199892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
147, 104
               

               
Conread position:
               
174-556
               

               
Cow position:
               
chr9:13994438-13994042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
174-563
               

               
Cow position:
               
chr9:48118452-48118813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
101, 50
               

               
Conread position:
               
174-566
               

               
Cow position:
               
chr9:29184883-29185271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 111
               

               
Conread position:
               
174-567
               

               
Cow position:
               
chr9:9443347-9443743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 101
               

               
Conread position:
               
174-570
               

               
Cow position:
               
chr9:17740694-17741076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
60, 108
               

               
Conread position:
               
174-570
               

               
Cow position:
               
chr9:26278923-26279307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 112
               

               
Conread position:
               
174-571
               

               
Cow position:
               
chr9:30402170-30402566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 90
               

               
Conread position:
               
174-571
               

               
Cow position:
               
chr9:41416601-41416194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 69
               

               
Conread position:
               
174-571
               

               
Cow position:
               
chr9:53257810-53258192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 64
               

               
Conread position:
               
174-573
               

               
Cow position:
               
chr9:5327504-5327124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
163, 85
               

               
Conread position:
               
174-573
               

               
Cow position:
               
chr9:15805671-15806064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 99
               

               
Conread position:
               
174-573
               

               
Cow position:
               
chr9:31077428-31077811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
101, 160
               

               
Conread position:
               
174-573
               

               
Cow position:
               
chr9:31626399-31625993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
55, 101
               

               
Conread position:
               
174-573
               

               
Cow position:
               
chr9:34374679-34375065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
55, 41
               

               
Conread position:
               
174-573
               

               
Cow position:
               
chr9:36490645-36491042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
162, 61
               

               
Conread position:
               
174-573
               

               
Cow position:
               
chr9:44710072-44709692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 14
               

               
Conread position:
               
174-573
               

               
Cow position:
               
chr9:49764906-49764507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
67, 111
               

               
Conread position:
               
174-573
               

               
Cow position:
               
chr9:61739167-61738783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
163, 50
               

               
Conread position:
               
174-574
               

               
Cow position:
               
chr9:20416259-20416653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
62, 106
               

               
Conread position:
               
174-574
               

               
Cow position:
               
chr9:43207129-43207517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
53, 24
               

               
Conread position:
               
174-574
               

               
Cow position:
               
chr9:52505053-52505448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
55, 187
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr9:6192209-6192597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
57, 103
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr9:7866315-7865931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
76, 6
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr9:8998605-8998213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 70
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr9:9516520-9516888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
294, 88
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr9:9552337-9551952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
157, 104
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr9:10118415-10118806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
155, 101
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr9:11299447-11299813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
165, 11
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr9:13670886-13670496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 105
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr9:14974676-14975069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
55, 92
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr9:16300321-16300717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 17
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr9:17634581-17634965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
63, 137
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr9:18381109-18380728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
161, 113
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr9:19539347-19538959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 184
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr9:20318328-20318714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 125
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr9:20406888-20406515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
55, 103
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr9:20681157-20681542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
109, 36
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr9:22151837-22152222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 69
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr9:22638350-22637959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 66
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr9:23388428-23388820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
162, 101
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr9:26057198-26057569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
163, 24
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr9:28773367-28773001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr9:30138376-30137983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
165, 79
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr9:32676936-32676534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 199
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr9:34287044-34286658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 36
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr9:35167418-35167026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
336, 60
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr9:41283276-41282872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 31
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr9:51566237-51566638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 10
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr9:51620686-51620304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 91
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr9:52484667-52485052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
102, 165
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr9:55118328-55117942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
46, 22
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr9:55287641-55288029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
27, 118
               

               
Conread position:
               
174-575
               

               
Cow position:
               
chr9:59013085-59013478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 49
               

               
Conread position:
               
175-336
               

               
Cow position:
               
chr9:5161817-5161975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
175-339
               

               
Cow position:
               
chr9:37141477-37141319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
175-357
               

               
Cow position:
               
chr9:5393300-5393114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
54, 104
               

               
Conread position:
               
175-370
               

               
Cow position:
               
chr9:27077002-27077191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
162, 60
               

               
Conread position:
               
175-426
               

               
Cow position:
               
chr9:10092144-10092388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
105, 48
               

               
Conread position:
               
175-479
               

               
Cow position:
               
chr9:25546883-25546593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
56, 73
               

               
Conread position:
               
175-520
               

               
Cow position:
               
chr9:63746053-63745727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
100, 60
               

               
Conread position:
               
175-526
               

               
Cow position:
               
chr9:64050306-64050655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 199
               

               
Conread position:
               
175-526
               

               
Cow position:
               
chr9:64091937-64091585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
61, 104
               

               
Conread position:
               
175-532
               

               
Cow position:
               
chr9:60110482-60110150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
175-539
               

               
Cow position:
               
chr9:5433884-5433527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 68
               

               
Conread position:
               
175-539
               

               
Cow position:
               
chr9:20091287-20090941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
133, 9
               

               
Conread position:
               
175-571
               

               
Cow position:
               
chr9:21030565-21030168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 194
               

               
Conread position:
               
175-575
               

               
Cow position:
               
chr9:1751583-1751189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 112
               

               
Conread position:
               
175-575
               

               
Cow position:
               
chr9:6933823-6934221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 52
               

               
Conread position:
               
175-575
               

               
Cow position:
               
chr9:10011049-10010672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 54
               

               
Conread position:
               
175-575
               

               
Cow position:
               
chr9:18252674-18253060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
54, 92
               

               
Conread position:
               
175-575
               

               
Cow position:
               
chr9:48564344-48563938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
62, 126
               

               
Conread position:
               
176-329
               

               
Cow position:
               
chr9:3411018-3410866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
24, 98
               

               
Conread position:
               
176-357
               

               
Cow position:
               
chr9:23541170-23541342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
161, 57
               

               
Conread position:
               
176-361
               

               
Cow position:
               
chr9:25657762-25657571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
54, 117
               

               
Conread position:
               
176-362
               

               
Cow position:
               
chr9:29108785-29108598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
128, 27
               

               
Conread position:
               
176-362
               

               
Cow position:
               
chr9:29808712-29808517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
176-362
               

               
Cow position:
               
chr9:32812596-32812405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
60, 103
               

               
Conread position:
               
176-362
               

               
Cow position:
               
chr9:34919018-34919202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
160, 87
               

               
Conread position:
               
176-362
               

               
Cow position:
               
chr9:58204914-58204725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
60, 116
               

               
Conread position:
               
176-365
               

               
Cow position:
               
chr9:47869255-47869068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
48, 111
               

               
Conread position:
               
176-365
               

               
Cow position:
               
chr9:58133774-58133961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
49, 103
               

               
Conread position:
               
176-370
               

               
Cow position:
               
chr9:61846902-61847097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
163, 60
               

               
Conread position:
               
176-395
               

               
Cow position:
               
chr9:16745925-16745702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
50, 20
               

               
Conread position:
               
176-417
               

               
Cow position:
               
chr9:17785213-17785441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
176-469
               

               
Cow position:
               
chr9:35850147-35849867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
176-485
               

               
Cow position:
               
chr9:34468345-34468631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
176-495
               

               
Cow position:
               
chr9:4861640-4861321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
51, 114
               

               
Conread position:
               
176-496
               

               
Cow position:
               
chr9:5209832-5209516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
51, 115
               

               
Conread position:
               
176-497
               

               
Cow position:
               
chr9:24997268-24997583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
60, 20
               

               
Conread position:
               
176-506
               

               
Cow position:
               
chr9:41679983-41679673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
161, 34
               

               
Conread position:
               
176-508
               

               
Cow position:
               
chr9:28983429-28983107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
51, 107
               

               
Conread position:
               
176-528
               

               
Cow position:
               
chr9:8338278-8337933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
53, 113
               

               
Conread position:
               
176-531
               

               
Cow position:
               
chr9:63194856-63194508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
56, 115
               

               
Conread position:
               
176-536
               

               
Cow position:
               
chr9:16086508-16086136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
45, 117
               

               
Conread position:
               
176-538
               

               
Cow position:
               
chr9:8288865-8288512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
161, 109
               

               
Conread position:
               
176-543
               

               
Cow position:
               
chr9:47954977-47955355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 5
               

               
Conread position:
               
176-567
               

               
Cow position:
               
chr9:31640070-31640460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
53, 115
               

               
Conread position:
               
176-575
               

               
Cow position:
               
chr9:8724044-8723655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
53, 83
               

               
Conread position:
               
176-575
               

               
Cow position:
               
chr9:17871859-17872247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 77
               

               
Conread position:
               
176-575
               

               
Cow position:
               
chr9:45285283-45285679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 96
               

               
Conread position:
               
176-575
               

               
Cow position:
               
chr9:55256301-55256689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
63, 26
               

               
Conread position:
               
177-370
               

               
Cow position:
               
chr9:3387937-3387744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
160, 8
               

               
Conread position:
               
177-371
               

               
Cow position:
               
chr9:8997803-8997601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
177-543
               

               
Cow position:
               
chr9:61493274-61492921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
52, 141
               

               
Conread position:
               
177-575
               

               
Cow position:
               
chr9:8548056-8547668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
159, 36
               

               
Conread position:
               
177-575
               

               
Cow position:
               
chr9:52578286-52578678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
52, 113
               

               
Conread position:
               
178-329
               

               
Cow position:
               
chr9:22616869-22616721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
178-362
               

               
Cow position:
               
chr9:3070177-3070360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
97, 66
               

               
Conread position:
               
178-370
               

               
Cow position:
               
chr9:8546564-8546375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
158, 97
               

               
Conread position:
               
178-459
               

               
Cow position:
               
chr9:35533705-35533980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
87, 71
               

               
Conread position:
               
178-530
               

               
Cow position:
               
chr9:14796532-14796868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
97, 41
               

               
Conread position:
               
178-533
               

               
Cow position:
               
chr9:50139527-50139184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
159, 50
               

               
Conread position:
               
178-538
               

               
Cow position:
               
chr9:50080800-50081146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
225, 95
               

               
Conread position:
               
178-556
               

               
Cow position:
               
chr9:824201-823838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
178-575
               

               
Cow position:
               
chr9:12428261-12428643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
51, 10
               

               
Conread position:
               
179-424
               

               
Cow position:
               
chr9:18162910-18163149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
71, 93
               

               
Conread position:
               
179-485
               

               
Cow position:
               
chr9:13181811-13182107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
69, 110
               

               
Conread position:
               
179-493
               

               
Cow position:
               
chr9:23368526-23368838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
57, 100
               

               
Conread position:
               
179-538
               

               
Cow position:
               
chr9:8563086-8562716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
47, 111
               

               
Conread position:
               
179-566
               

               
Cow position:
               
chr9:31124678-31125062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
41, 67
               

               
Conread position:
               
179-571
               

               
Cow position:
               
chr9:52131263-52130875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 29
               

               
Conread position:
               
179-575
               

               
Cow position:
               
chr9:6397540-6397926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
253, 36
               

               
Conread position:
               
179-575
               

               
Cow position:
               
chr9:9573580-9573180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 112
               

               
Conread position:
               
179-575
               

               
Cow position:
               
chr9:20942365-20942759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 80
               

               
Conread position:
               
179-575
               

               
Cow position:
               
chr9:34957806-34958192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 100
               

               
Conread position:
               
180-323
               

               
Cow position:
               
chr9:33823342-33823201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
180-374
               

               
Cow position:
               
chr9:41513863-41513673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
157, 55
               

               
Conread position:
               
180-487
               

               
Cow position:
               
chr9:35203128-35202824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
49, 99
               

               
Conread position:
               
180-550
               

               
Cow position:
               
chr9:766906-767266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
49, 98
               

               
Conread position:
               
180-559
               

               
Cow position:
               
chr9:1729432-1729801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 67
               

               
Conread position:
               
180-575
               

               
Cow position:
               
chr9:29092048-29091630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
59, 209
               

               
Conread position:
               
180-575
               

               
Cow position:
               
chr9:60390474-60390847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
181-374
               

               
Cow position:
               
chr9:40604193-40603994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
55, 193
               

               
Conread position:
               
181-575
               

               
Cow position:
               
chr9:6840254-6839851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 196
               

               
Conread position:
               
181-575
               

               
Cow position:
               
chr9:32306993-32307374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
49, 98
               

               
Conread position:
               
182-575
               

               
Cow position:
               
chr9:3186385-3185989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
7, 189
               

               
Conread position:
               
183-567
               

               
Cow position:
               
chr9:56011738-56011371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
46, 108
               

               
Conread position:
               
185-546
               

               
Cow position:
               
chr9:29825275-29824919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
148, 101
               

               
Conread position:
               
185-573
               

               
Cow position:
               
chr9:35128733-35128338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
151, 72
               

               
Conread position:
               
186-512
               

               
Cow position:
               
chr9:58972255-58972574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
50, 8
               

               
Conread position:
               
186-538
               

               
Cow position:
               
chr9:11319394-11319740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
42, 101
               

               
Conread position:
               
187-450
               

               
Cow position:
               
chr9:50702875-50703129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
45, 148
               

               
Conread position:
               
187-575
               

               
Cow position:
               
chr9:45141368-45141736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
146, 81
               

               
Conread position:
               
189-539
               

               
Cow position:
               
chr9:15225055-15225404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
86, 61
               

               
Conread position:
               
189-575
               

               
Cow position:
               
chr9:30124157-30123790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
21, 88
               

               
Conread position:
               
189-575
               

               
Cow position:
               
chr9:35027938-35028307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
5, 13
               

               
Conread position:
               
191-539
               

               
Cow position:
               
chr9:4267747-4268091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
38, 98
               

               
Conread position:
               
192-575
               

               
Cow position:
               
chr9:43623492-43623125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
37, 116
               

               
Conread position:
               
193-374
               

               
Cow position:
               
chr9:32711163-32710978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
20, 97
               

               
Conread position:
               
193-416
               

               
Cow position:
               
chr9:33038227-33038448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
39, 144
               

               
Conread position:
               
193-567
               

               
Cow position:
               
chr9:22755022-22754648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
43, 99
               

               
Conread position:
               
193-575
               

               
Cow position:
               
chr9:40302894-40303275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
33, 99
               

               
Conread position:
               
193-575
               

               
Cow position:
               
chr9:62724777-62724402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
27, 60
               

               
Conread position:
               
194-483
               

               
Cow position:
               
chr9:1916517-1916236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
142, 94
               

               
Conread position:
               
194-575
               

               
Cow position:
               
chr9:6339032-6338650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 185
               

               
Conread position:
               
195-361
               

               
Cow position:
               
chr9:50667653-50667484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
136, 80
               

               
Conread position:
               
197-526
               

               
Cow position:
               
chr9:30652483-30652805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
142, 13
               

               
Conread position:
               
197-571
               

               
Cow position:
               
chr9:30477557-30477908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
116, 50
               

               
Conread position:
               
197-575
               

               
Cow position:
               
chr9:53762928-53762559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
32, 92
               

               
Conread position:
               
198-538
               

               
Cow position:
               
chr9:1973168-1972842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
141, 89
               

               
Conread position:
               
199-417
               

               
Cow position:
               
chr9:6117922-6118134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
33, 134
               

               
Conread position:
               
200-406
               

               
Cow position:
               
chr9:1997362-1997163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
200-573
               

               
Cow position:
               
chr9:27279542-27279168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 97
               

               
Conread position:
               
202-574
               

               
Cow position:
               
chr9:42062338-42061954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
26, 89
               

               
Conread position:
               
202-575
               

               
Cow position:
               
chr9:43048404-43048757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
73, 138
               

               
Conread position:
               
203-531
               

               
Cow position:
               
chr9:28354739-28354418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 83
               

               
Conread position:
               
204-376
               

               
Cow position:
               
chr9:1879596-1879427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
167, 83
               

               
Conread position:
               
207-538
               

               
Cow position:
               
chr9:31638423-31638763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
32, 81
               

               
Conread position:
               
207-538
               

               
Cow position:
               
chr9:33093171-33092854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
130, 159
               

               
Conread position:
               
210-358
               

               
Cow position:
               
chr9:29578458-29578310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
121, 37
               

               
Conread position:
               
210-358
               

               
Cow position:
               
chr9:51011326-51011481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
20, 101
               

               
Conread position:
               
210-575
               

               
Cow position:
               
chr9:11123278-11123620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
129, 23
               

               
Conread position:
               
211-575
               

               
Cow position:
               
chr9:48628244-48627883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
18, 78
               

               
Conread position:
               
213-573
               

               
Cow position:
               
chr9:17676910-17677251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
213-575
               

               
Cow position:
               
chr9:59053886-59053522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
18, 128
               

               
Conread position:
               
214-505
               

               
Cow position:
               
chr9:49417197-49416914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
125, 60
               

               
Conread position:
               
215-548
               

               
Cow position:
               
chr9:33237601-33237279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
20, 30
               

               
Conread position:
               
215-573
               

               
Cow position:
               
chr9:8920207-8919866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
123, 60
               

               
Conread position:
               
219-374
               

               
Cow position:
               
chr9:58734574-58734417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
118, 5
               

               
Conread position:
               
219-504
               

               
Cow position:
               
chr9:47500003-47500284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
64, 5
               

               
Conread position:
               
219-507
               

               
Cow position:
               
chr9:19493259-19493541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
115, 5
               

               
Conread position:
               
219-575
               

               
Cow position:
               
chr9:4512691-4512341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
64, 5
               

               
Conread position:
               
219-575
               

               
Cow position:
               
chr9:16811459-16811795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
219-575
               

               
Cow position:
               
chr9:52637956-52638310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
115, 5
               

               
Conread position:
               
220-575
               

               
Cow position:
               
chr9:25805038-25804688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
254, 55
               

               
Conread position:
               
221-371
               

               
Cow position:
               
chr9:14358365-14358213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
109, 54
               

               
Conread position:
               
221-570
               

               
Cow position:
               
chr9:53138928-53139270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
115, 157
               

               
Conread position:
               
221-575
               

               
Cow position:
               
chr9:9815616-9815270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 23
               

               
Conread position:
               
223-538
               

               
Cow position:
               
chr9:50543223-50543533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
25, 18
               

               
Conread position:
               
223-567
               

               
Cow position:
               
chr9:58447922-58448258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
185, 65
               

               
Conread position:
               
223-575
               

               
Cow position:
               
chr9:4340969-4341296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
224-542
               

               
Cow position:
               
chr9:39428600-39428915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
112, 66
               

               
Conread position:
               
224-573
               

               
Cow position:
               
chr9:10650105-10650428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
66, 20
               

               
Conread position:
               
224-575
               

               
Cow position:
               
chr9:26440600-26440955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
227-560
               

               
Cow position:
               
chr9:62151298-62150985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
106, 48
               

               
Conread position:
               
229-574
               

               
Cow position:
               
chr9:12910208-12910539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
84, 17
               

               
Conread position:
               
232-575
               

               
Cow position:
               
chr9:57274424-57274078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
37, 103
               

               
Conread position:
               
233-534
               

               
Cow position:
               
chr9:19555565-19555274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
35, 53
               

               
Conread position:
               
233-575
               

               
Cow position:
               
chr9:41728446-41728120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
236-573
               

               
Cow position:
               
chr9:25584008-25583691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
238-575
               

               
Cow position:
               
chr9:28451972-28452309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
97, 47
               

               
Conread position:
               
244-534
               

               
Cow position:
               
chr9:11168910-11168631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
95, 43
               

               
Conread position:
               
244-567
               

               
Cow position:
               
chr9:47445847-47446150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
94, 44
               

               
Conread position:
               
244-573
               

               
Cow position:
               
chr9:49374369-49374048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
31, 71
               

               
Conread position:
               
244-575
               

               
Cow position:
               
chr9:8901044-8901369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 21
               

               
Conread position:
               
245-575
               

               
Cow position:
               
chr9:47590802-47591124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
30, 13
               

               
Conread position:
               
247-452
               

               
Cow position:
               
chr9:41853619-41853412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
36, 130
               

               
Conread position:
               
250-517
               

               
Cow position:
               
chr9:60027371-60027112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
88, 35
               

               
Conread position:
               
250-575
               

               
Cow position:
               
chr9:12225808-12226125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
25, 5
               

               
Conread position:
               
252-575
               

               
Cow position:
               
chr9:60394879-60395189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
106, 34
               

               
Conread position:
               
255-520
               

               
Cow position:
               
chr9:51720733-51720985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
255-533
               

               
Cow position:
               
chr9:31557560-31557825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
84, 32
               

               
Conread position:
               
255-573
               

               
Cow position:
               
chr9:5263669-5263364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
255-575
               

               
Cow position:
               
chr9:31216257-31215939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
20, 86
               

               
Conread position:
               
256-575
               

               
Cow position:
               
chr9:12281137-12280833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
83, 50
               

               
Conread position:
               
257-575
               

               
Cow position:
               
chr9:1755975-1756291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
26, 79
               

               
Conread position:
               
259-508
               

               
Cow position:
               
chr9:49292981-49293219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
263-567
               

               
Cow position:
               
chr9:27356081-27355786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
263-567
               

               
Cow position:
               
chr9:27358867-27358572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
263-575
               

               
Cow position:
               
chr9:10905653-10905960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
73, 41
               

               
Conread position:
               
263-575
               

               
Cow position:
               
chr9:39211768-39211471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
115, 25
               

               
Conread position:
               
264-575
               

               
Cow position:
               
chr9:39011317-39011610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
267-575
               

               
Cow position:
               
chr9:11310020-11309717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
69, 21
               

               
Conread position:
               
268-575
               

               
Cow position:
               
chr9:33114501-33114199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
70, 18
               

               
Conread position:
               
272-575
               

               
Cow position:
               
chr9:38624474-38624767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
16, 40
               

               
Conread position:
               
275-575
               

               
Cow position:
               
chr9:48730578-48730288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
64, 43
               

               
Conread position:
               
276-558
               

               
Cow position:
               
chr9:41394505-41394773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
278-538
               

               
Cow position:
               
chr9:28686539-28686281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
83, 45
               

               
Conread position:
               
278-575
               

               
Cow position:
               
chr9:34284095-34283813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
279-575
               

               
Cow position:
               
chr9:18426063-18425769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
59, 106
               

               
Conread position:
               
280-538
               

               
Cow position:
               
chr9:35105645-35105896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
280-575
               

               
Cow position:
               
chr9:32669802-32670089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
59, 86
               

               
Conread position:
               
283-575
               

               
Cow position:
               
chr9:3573612-3573324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
30, 81
               

               
Conread position:
               
286-567
               

               
Cow position:
               
chr9:11969327-11969052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
50, 66
               

               
Conread position:
               
288-573
               

               
Cow position:
               
chr9:32853502-32853799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
48, 68
               

               
Conread position:
               
290-575
               

               
Cow position:
               
chr9:53109390-53109111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
19, 75
               

               
Conread position:
               
291-575
               

               
Cow position:
               
chr9:28917344-28917625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
22, 66
               

               
Conread position:
               
291-575
               

               
Cow position:
               
chr9:40005610-40005334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
47, 74
               

               
Conread position:
               
291-575
               

               
Cow position:
               
chr9:44396794-44396519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
16, 67
               

               
Conread position:
               
291-575
               

               
Cow position:
               
chr9:55438290-55438572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
48, 79
               

               
Conread position:
               
293-575
               

               
Cow position:
               
chr9:13743800-13744074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
46, 59
               

               
Conread position:
               
294-573
               

               
Cow position:
               
chr9:54411018-54411299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
42, 84
               

               
Conread position:
               
294-575
               

               
Cow position:
               
chr9:34410264-34410533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
39, 63
               

               
Conread position:
               
311-575
               

               
Cow position:
               
chr9:6954134-6954393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
9, 25
               

               
Conread position:
               
311-575
               

               
Cow position:
               
chr9:20755641-20755899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
28, 45
               

               
Conread position:
               
312-575
               

               
Cow position:
               
chr9:33584569-33584824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
27, 44
               

               
Conread position:
               
312-575
               

               
Cow position:
               
chr9:38941318-38941577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
23, 77
               

               
Conread position:
               
315-525
               

               
Cow position:
               
chr9:28379080-28378875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
19, 43
               

               
Conread position:
               
319-575
               

               
Cow position:
               
chr9:49863444-49863696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
17, 38
               

               
Conread position:
               
320-575
               

               
Cow position:
               
chr9:35547377-35547125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
16, 44
               

               
Conread position:
               
326-575
               

               
Cow position:
               
chr9:62007269-62007023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
13, 44
               

               
Conread position:
               
333-575
               

               
Cow position:
               
chr9:9311950-9311719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
336-575
               

               
Cow position:
               
chr9:8716682-8716924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
28, 51
               

               
Conread position:
               
337-575
               

               
Cow position:
               
chr9:33542142-33541912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
108, 17
               

               
Conread position:
               
359-539
               

               
Cow position:
               
chr9:18827982-18828161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
359-570
               

               
Cow position:
               
chr9:52511187-52510980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
14, 20
               

               
Conread position:
               
359-575
               

               
Cow position:
               
chr9:12398673-12398455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
18, 80
               

               
Conread position:
               
359-575
               

               
Cow position:
               
chr9:52754784-52754992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
360-573
               

               
Cow position:
               
chr9:5110930-5110718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
158, 0
               

               
Conread position:
               
364-575
               

               
Cow position:
               
chr9:30012940-30012731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
364-575
               

               
Cow position:
               
chr9:53454368-53454580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
366-575
               

               
Cow position:
               
chr9:48017047-48016849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
74, 142
               

               
Conread position:
               
367-573
               

               
Cow position:
               
chr9:57131559-57131358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
367-574
               

               
Cow position:
               
chr9:60399257-60399050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
13, 69
               

               
Conread position:
               
368-575
               

               
Cow position:
               
chr9:17840614-17840819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
27, 20
               

               
Conread position:
               
368-575
               

               
Cow position:
               
chr9:33411508-33411714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
369-575
               

               
Cow position:
               
chr9:23955917-23956117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
371-575
               

               
Cow position:
               
chr9:17276829-17277032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
371-575
               

               
Cow position:
               
chr9:46930519-46930319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
371-575
               

               
Cow position:
               
chr9:52030540-52030336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
18, 11
               

               
Conread position:
               
371-575
               

               
Cow position:
               
chr9:58672501-58672298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
25, 7
               

               
Conread position:
               
374-567
               

               
Cow position:
               
chr9:55494928-55495121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
374-575
               

               
Cow position:
               
chr9:32348755-32348962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
375-570
               

               
Cow position:
               
chr9:54986098-54986296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
375-573
               

               
Cow position:
               
chr9:38865925-38866122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
21, 76
               

               
Conread position:
               
375-575
               

               
Cow position:
               
chr9:34768682-34768483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
180, 0
               

               
Conread position:
               
375-575
               

               
Cow position:
               
chr9:37199184-37198987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
377-574
               

               
Cow position:
               
chr9:52763705-52763895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
377-575
               

               
Cow position:
               
chr9:5104348-5104550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
113, 77
               

               
Conread position:
               
377-575
               

               
Cow position:
               
chr9:13945661-13945462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
377-575
               

               
Cow position:
               
chr9:14738304-14738112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
378-569
               

               
Cow position:
               
chr9:29194970-29195166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
378-575
               

               
Cow position:
               
chr9:28263573-28263376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
378-575
               

               
Cow position:
               
chr9:44758878-44759067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
379-565
               

               
Cow position:
               
chr9:8992126-8992309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
111, 146
               

               
Conread position:
               
379-566
               

               
Cow position:
               
chr9:25375683-25375868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
380-575
               

               
Cow position:
               
chr9:39709909-39709713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
384-575
               

               
Cow position:
               
chr9:20637420-20637235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
388-575
               

               
Cow position:
               
chr9:53124132-53123946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
390-574
               

               
Cow position:
               
chr9:4181506-4181691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
393-575
               

               
Cow position:
               
chr9:29984503-29984321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
394-575
               

               
Cow position:
               
chr9:48115717-48115543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
395-575
               

               
Cow position:
               
chr9:26558011-26557825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
396-573
               

               
Cow position:
               
chr9:12786437-12786614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
396-575
               

               
Cow position:
               
chr9:43680156-43679981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
149, 0
               

               
Conread position:
               
399-575
               

               
Cow position:
               
chr9:35466489-35466666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
400-575
               

               
Cow position:
               
chr9:37955139-37955314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
402-575
               

               
Cow position:
               
chr9:31344577-31344750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
405-575
               

               
Cow position:
               
chr9:49984014-49984184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
411-542
               

               
Cow position:
               
chr9:28718733-28718602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
411-575
               

               
Cow position:
               
chr9:5220789-5220953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
411-575
               

               
Cow position:
               
chr9:36458020-36457856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
417-575
               

               
Cow position:
               
chr9:33127838-33127996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
5, 75
               

               
Conread position:
               
419-575
               

               
Cow position:
               
chr9:34423633-34423478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
420-573
               

               
Cow position:
               
chr9:20017408-20017259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
421-573
               

               
Cow position:
               
chr9:17785555-17785707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
421-575
               

               
Cow position:
               
chr9:14357426-14357272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
422-575
               

               
Cow position:
               
chr9:12355795-12355641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
119, 14
               

               
Conread position:
               
434-574
               

               
Cow position:
               
chr9:61909386-61909245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
69, 84
               

               
Conread position:
               
436-575
               

               
Cow position:
               
chr9:28315425-28315284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
436-575
               

               
Cow position:
               
chr9:54598669-54598530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
438-575
               

               
Cow position:
               
chr9:20828900-20828763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
438-575
               

               
Cow position:
               
chr9:62136120-62136257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
439-575
               

               
Cow position:
               
chr9:28342658-28342795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
439-575
               

               
Cow position:
               
chr9:37950904-37951040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
441-575
               

               
Cow position:
               
chr9:19656985-19657117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
444-575
               

               
Cow position:
               
chr9:11199949-11200080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
444-575
               

               
Cow position:
               
chr9:61019374-61019505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
444-575
               

               
Cow position:
               
chr9:63185707-63185837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
446-575
               

               
Cow position:
               
chr9:13722152-13722281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
446-575
               

               
Cow position:
               
chr9:34276224-34276353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
459-570
               

               
Cow position:
               
chr9:35360316-35360427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
466-575
               

               
Cow position:
               
chr9:12495183-12495074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.