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Cow genome map

           
Conread name:
           
rcmu31_n5.y1
        

               
Conread position:
               
1-99
               

               
Cow position:
               
chr20:8556465-8556361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
1-99
               

               
Cow position:
               
chr20:32847162-32847265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr20:21204233-21204509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
57, 27
               

               
Conread position:
               
2-345
               

               
Cow position:
               
chr20:12420738-12420402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
6, 13
               

               
Conread position:
               
3-325
               

               
Cow position:
               
chr20:13983218-13983554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
55, 287
               

               
Conread position:
               
46-295
               

               
Cow position:
               
chr20:10772124-10772375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
8, 56
               

               
Conread position:
               
51-308
               

               
Cow position:
               
chr20:2169795-2169542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
76, 29
               

               
Conread position:
               
54-279
               

               
Cow position:
               
chr20:6423905-6424124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
73, 21
               

               
Conread position:
               
54-290
               

               
Cow position:
               
chr20:11482201-11481970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
54-300
               

               
Cow position:
               
chr20:19751241-19751482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
102, 33
               

               
Conread position:
               
54-318
               

               
Cow position:
               
chr20:21714689-21714962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
152, 38
               

               
Conread position:
               
54-319
               

               
Cow position:
               
chr20:29805726-29805467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
80, 12
               

               
Conread position:
               
54-322
               

               
Cow position:
               
chr20:7756693-7756427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 9
               

               
Conread position:
               
55-347
               

               
Cow position:
               
chr20:13023567-13023283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
9, 44
               

               
Conread position:
               
61-281
               

               
Cow position:
               
chr20:4787074-4786862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
67, 18
               

               
Conread position:
               
63-320
               

               
Cow position:
               
chr20:24902358-24902099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
64, 40
               

               
Conread position:
               
70-300
               

               
Cow position:
               
chr20:9267158-9266934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
58, 27
               

               
Conread position:
               
75-347
               

               
Cow position:
               
chr20:28605158-28605425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 68
               

               
Conread position:
               
76-275
               

               
Cow position:
               
chr20:25162175-25161975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
59, 23
               

               
Conread position:
               
76-281
               

               
Cow position:
               
chr20:18320838-18320638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
58, 23
               

               
Conread position:
               
76-307
               

               
Cow position:
               
chr20:20099643-20099417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
37, 23
               

               
Conread position:
               
76-319
               

               
Cow position:
               
chr20:21928859-21929097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
76-347
               

               
Cow position:
               
chr20:15822506-15822769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
243, 21
               

               
Conread position:
               
78-272
               

               
Cow position:
               
chr20:36239194-36239393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
10, 33
               

               
Conread position:
               
79-231
               

               
Cow position:
               
chr20:35354869-35354715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
79-270
               

               
Cow position:
               
chr20:28441285-28441472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
79-272
               

               
Cow position:
               
chr20:25351452-25351266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
51, 110
               

               
Conread position:
               
79-346
               

               
Cow position:
               
chr20:23846713-23846447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
41, 21
               

               
Conread position:
               
79-347
               

               
Cow position:
               
chr20:38514738-38515008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 20
               

               
Conread position:
               
89-290
               

               
Cow position:
               
chr20:6096530-6096330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
7, 50
               

               
Conread position:
               
92-295
               

               
Cow position:
               
chr20:13652397-13652197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
92-343
               

               
Cow position:
               
chr20:5702691-5702937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 16
               

               
Conread position:
               
94-332
               

               
Cow position:
               
chr20:8547034-8547268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
5, 126
               

               
Conread position:
               
96-309
               

               
Cow position:
               
chr20:5078596-5078810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
37, 200
               

               
Conread position:
               
97-252
               

               
Cow position:
               
chr20:3606989-3606834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
39, 113
               

               
Conread position:
               
97-275
               

               
Cow position:
               
chr20:39743279-39743460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
36, 27
               

               
Conread position:
               
97-286
               

               
Cow position:
               
chr20:36207778-36207975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
97-304
               

               
Cow position:
               
chr20:20967292-20967501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
97-310
               

               
Cow position:
               
chr20:17100334-17100547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
29, 45
               

               
Conread position:
               
97-347
               

               
Cow position:
               
chr20:10208779-10209026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
31, 151
               

               
Conread position:
               
98-268
               

               
Cow position:
               
chr20:33363489-33363661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
98-269
               

               
Cow position:
               
chr20:21999972-22000146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
38, 112
               

               
Conread position:
               
98-269
               

               
Cow position:
               
chr20:22265271-22265108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
98-272
               

               
Cow position:
               
chr20:6358589-6358767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
98-272
               

               
Cow position:
               
chr20:7211014-7211181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
98-272
               

               
Cow position:
               
chr20:8307993-8308163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
98-272
               

               
Cow position:
               
chr20:32084107-32083935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
38, 109
               

               
Conread position:
               
98-274
               

               
Cow position:
               
chr20:39212607-39212432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
18, 45
               

               
Conread position:
               
98-275
               

               
Cow position:
               
chr20:8702943-8702761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
45, 96
               

               
Conread position:
               
98-275
               

               
Cow position:
               
chr20:11542309-11542137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
156, 50
               

               
Conread position:
               
98-275
               

               
Cow position:
               
chr20:38670733-38670900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
98-279
               

               
Cow position:
               
chr20:7438879-7438697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
98-280
               

               
Cow position:
               
chr20:30888007-30888191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
83, 39
               

               
Conread position:
               
98-281
               

               
Cow position:
               
chr20:1576067-1576253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
27, 63
               

               
Conread position:
               
98-281
               

               
Cow position:
               
chr20:11359655-11359476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
86, 40
               

               
Conread position:
               
98-286
               

               
Cow position:
               
chr20:40511784-40511596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
30, 66
               

               
Conread position:
               
98-291
               

               
Cow position:
               
chr20:33532280-33532469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
98-291
               

               
Cow position:
               
chr20:38817980-38818164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
98-294
               

               
Cow position:
               
chr20:22484837-22485032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
183, 33
               

               
Conread position:
               
98-295
               

               
Cow position:
               
chr20:15568971-15568779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
98-295
               

               
Cow position:
               
chr20:34777154-34777350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
98-298
               

               
Cow position:
               
chr20:16548303-16548104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
49, 34
               

               
Conread position:
               
98-298
               

               
Cow position:
               
chr20:21372281-21372481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
28, 43
               

               
Conread position:
               
98-298
               

               
Cow position:
               
chr20:32463547-32463351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
98-301
               

               
Cow position:
               
chr20:38768482-38768285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
179, 34
               

               
Conread position:
               
98-307
               

               
Cow position:
               
chr20:21815535-21815743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 55
               

               
Conread position:
               
98-310
               

               
Cow position:
               
chr20:9433560-9433771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
28, 50
               

               
Conread position:
               
98-310
               

               
Cow position:
               
chr20:12239714-12239497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
17, 116
               

               
Conread position:
               
98-310
               

               
Cow position:
               
chr20:20203190-20203403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
48, 200
               

               
Conread position:
               
98-312
               

               
Cow position:
               
chr20:22030294-22030506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
41, 149
               

               
Conread position:
               
98-315
               

               
Cow position:
               
chr20:5826915-5827129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
35, 73
               

               
Conread position:
               
98-317
               

               
Cow position:
               
chr20:28067452-28067230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
19, 13
               

               
Conread position:
               
98-319
               

               
Cow position:
               
chr20:15565851-15565639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
98-320
               

               
Cow position:
               
chr20:32866215-32866001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
35, 116
               

               
Conread position:
               
98-321
               

               
Cow position:
               
chr20:12996036-12995814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
29, 137
               

               
Conread position:
               
98-322
               

               
Cow position:
               
chr20:23870846-23870621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
29, 47
               

               
Conread position:
               
98-323
               

               
Cow position:
               
chr20:5636458-5636679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
201, 32
               

               
Conread position:
               
98-323
               

               
Cow position:
               
chr20:7709811-7709581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
98-330
               

               
Cow position:
               
chr20:19060865-19060638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
39, 111
               

               
Conread position:
               
98-331
               

               
Cow position:
               
chr20:39266984-39266753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
40, 61
               

               
Conread position:
               
98-335
               

               
Cow position:
               
chr20:31746654-31746429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
32, 79
               

               
Conread position:
               
98-341
               

               
Cow position:
               
chr20:32709479-32709228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
98-344
               

               
Cow position:
               
chr20:11751623-11751870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
31, 114
               

               
Conread position:
               
98-344
               

               
Cow position:
               
chr20:15548926-15548673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
30, 49
               

               
Conread position:
               
98-344
               

               
Cow position:
               
chr20:24069778-24070021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 168
               

               
Conread position:
               
98-345
               

               
Cow position:
               
chr20:398330-398095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
52, 13
               

               
Conread position:
               
98-345
               

               
Cow position:
               
chr20:28982673-28982915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
35, 108
               

               
Conread position:
               
98-346
               

               
Cow position:
               
chr20:6240547-6240302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
98-346
               

               
Cow position:
               
chr20:7426220-7425980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
98-346
               

               
Cow position:
               
chr20:20898616-20898371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
92, 42
               

               
Conread position:
               
98-346
               

               
Cow position:
               
chr20:31740247-31739998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
48, 34
               

               
Conread position:
               
98-347
               

               
Cow position:
               
chr20:3255018-3255253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
156, 32
               

               
Conread position:
               
98-347
               

               
Cow position:
               
chr20:3599420-3599183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
155, 28
               

               
Conread position:
               
98-347
               

               
Cow position:
               
chr20:7738252-7738015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
98-347
               

               
Cow position:
               
chr20:12581982-12581737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 179
               

               
Conread position:
               
98-347
               

               
Cow position:
               
chr20:14806860-14807102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 200
               

               
Conread position:
               
98-347
               

               
Cow position:
               
chr20:14879761-14880005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
29, 44
               

               
Conread position:
               
98-347
               

               
Cow position:
               
chr20:16941316-16941063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
43, 93
               

               
Conread position:
               
98-347
               

               
Cow position:
               
chr20:20983971-20984216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
204, 48
               

               
Conread position:
               
98-347
               

               
Cow position:
               
chr20:21345402-21345658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
29, 41
               

               
Conread position:
               
98-347
               

               
Cow position:
               
chr20:21428134-21428377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
79, 154
               

               
Conread position:
               
98-347
               

               
Cow position:
               
chr20:23286357-23286112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
204, 39
               

               
Conread position:
               
98-347
               

               
Cow position:
               
chr20:29845024-29845274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
211, 164
               

               
Conread position:
               
98-347
               

               
Cow position:
               
chr20:33976456-33976708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
30, 127
               

               
Conread position:
               
98-347
               

               
Cow position:
               
chr20:34097983-34097729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
79, 207
               

               
Conread position:
               
98-347
               

               
Cow position:
               
chr20:38089886-38090135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 202
               

               
Conread position:
               
99-269
               

               
Cow position:
               
chr20:35797584-35797753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
26, 110
               

               
Conread position:
               
99-281
               

               
Cow position:
               
chr20:22978301-22978483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
33, 42
               

               
Conread position:
               
99-288
               

               
Cow position:
               
chr20:22235284-22235475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
21, 40
               

               
Conread position:
               
99-297
               

               
Cow position:
               
chr20:20242066-20242255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
88, 34
               

               
Conread position:
               
99-298
               

               
Cow position:
               
chr20:20056509-20056313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
87, 39
               

               
Conread position:
               
99-313
               

               
Cow position:
               
chr20:26723699-26723493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
99-313
               

               
Cow position:
               
chr20:36779753-36779543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
99-322
               

               
Cow position:
               
chr20:580948-580724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
37, 205
               

               
Conread position:
               
99-331
               

               
Cow position:
               
chr20:5998697-5998454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
99-341
               

               
Cow position:
               
chr20:40177221-40177457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
99-347
               

               
Cow position:
               
chr20:13269596-13269833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
9, 42
               

               
Conread position:
               
99-347
               

               
Cow position:
               
chr20:33067390-33067140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
34, 209
               

               
Conread position:
               
99-347
               

               
Cow position:
               
chr20:39398461-39398701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
221, 38
               

               
Conread position:
               
100-261
               

               
Cow position:
               
chr20:1009729-1009570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
100-291
               

               
Cow position:
               
chr20:39517983-39518172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
35, 48
               

               
Conread position:
               
100-321
               

               
Cow position:
               
chr20:14620333-14620105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
17, 204
               

               
Conread position:
               
101-347
               

               
Cow position:
               
chr20:14980535-14980288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
26, 170
               

               
Conread position:
               
102-268
               

               
Cow position:
               
chr20:23506491-23506326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
155, 35
               

               
Conread position:
               
102-269
               

               
Cow position:
               
chr20:7624270-7624101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
151, 38
               

               
Conread position:
               
102-275
               

               
Cow position:
               
chr20:35710148-35710326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
102-277
               

               
Cow position:
               
chr20:23792588-23792756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
102-288
               

               
Cow position:
               
chr20:13025637-13025443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
24, 39
               

               
Conread position:
               
102-292
               

               
Cow position:
               
chr20:8620178-8619980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
32, 163
               

               
Conread position:
               
102-294
               

               
Cow position:
               
chr20:1524521-1524320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
102-298
               

               
Cow position:
               
chr20:11550344-11550540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
33, 107
               

               
Conread position:
               
102-302
               

               
Cow position:
               
chr20:22065047-22065242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
44, 89
               

               
Conread position:
               
102-309
               

               
Cow position:
               
chr20:9376447-9376651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
57, 38
               

               
Conread position:
               
102-310
               

               
Cow position:
               
chr20:4205946-4206149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
40, 147
               

               
Conread position:
               
102-323
               

               
Cow position:
               
chr20:39728427-39728647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
115, 137
               

               
Conread position:
               
102-324
               

               
Cow position:
               
chr20:21761751-21761973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
42, 65
               

               
Conread position:
               
102-328
               

               
Cow position:
               
chr20:19363387-19363162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 152
               

               
Conread position:
               
102-336
               

               
Cow position:
               
chr20:15529846-15530071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
215, 27
               

               
Conread position:
               
102-336
               

               
Cow position:
               
chr20:41089816-41089584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
43, 72
               

               
Conread position:
               
102-347
               

               
Cow position:
               
chr20:354918-354679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
212, 36
               

               
Conread position:
               
102-347
               

               
Cow position:
               
chr20:5814547-5814788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
80, 35
               

               
Conread position:
               
102-347
               

               
Cow position:
               
chr20:5950663-5950421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
212, 24
               

               
Conread position:
               
102-347
               

               
Cow position:
               
chr20:6248625-6248380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
41, 35
               

               
Conread position:
               
102-347
               

               
Cow position:
               
chr20:8556292-8556051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 56
               

               
Conread position:
               
102-347
               

               
Cow position:
               
chr20:8578226-8578470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 32
               

               
Conread position:
               
102-347
               

               
Cow position:
               
chr20:10188252-10188494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
80, 85
               

               
Conread position:
               
102-347
               

               
Cow position:
               
chr20:12126326-12126082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
212, 38
               

               
Conread position:
               
102-347
               

               
Cow position:
               
chr20:14433448-14433201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
38, 157
               

               
Conread position:
               
103-251
               

               
Cow position:
               
chr20:16818396-16818545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
103-343
               

               
Cow position:
               
chr20:26996513-26996749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
173, 34
               

               
Conread position:
               
103-347
               

               
Cow position:
               
chr20:3141555-3141794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
199, 21
               

               
Conread position:
               
103-347
               

               
Cow position:
               
chr20:17251695-17251938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
37, 85
               

               
Conread position:
               
103-347
               

               
Cow position:
               
chr20:18379355-18379596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
26, 132
               

               
Conread position:
               
104-281
               

               
Cow position:
               
chr20:6372581-6372407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
13, 90
               

               
Conread position:
               
104-298
               

               
Cow position:
               
chr20:20739306-20739114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
23, 38
               

               
Conread position:
               
104-347
               

               
Cow position:
               
chr20:6054535-6054288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
23, 184
               

               
Conread position:
               
104-347
               

               
Cow position:
               
chr20:10200323-10200568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
41, 33
               

               
Conread position:
               
105-318
               

               
Cow position:
               
chr20:17845939-17846151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
38, 90
               

               
Conread position:
               
105-319
               

               
Cow position:
               
chr20:38578781-38578571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
28, 16
               

               
Conread position:
               
105-347
               

               
Cow position:
               
chr20:11008150-11008392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
208, 195
               

               
Conread position:
               
106-310
               

               
Cow position:
               
chr20:42166800-42166598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
27, 101
               

               
Conread position:
               
106-337
               

               
Cow position:
               
chr20:40157883-40158112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
221, 32
               

               
Conread position:
               
107-347
               

               
Cow position:
               
chr20:4892123-4891899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
25, 34
               

               
Conread position:
               
107-347
               

               
Cow position:
               
chr20:40423119-40422879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
92, 28
               

               
Conread position:
               
108-344
               

               
Cow position:
               
chr20:6258078-6257834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
112-347
               

               
Cow position:
               
chr20:11043489-11043241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
26, 96
               

               
Conread position:
               
114-281
               

               
Cow position:
               
chr20:9412476-9412644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
115-347
               

               
Cow position:
               
chr20:32847333-32847561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
15, 163
               

               
Conread position:
               
116-320
               

               
Cow position:
               
chr20:33438987-33438784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
188, 22
               

               
Conread position:
               
117-280
               

               
Cow position:
               
chr20:32891212-32891050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
12, 59
               

               
Conread position:
               
123-347
               

               
Cow position:
               
chr20:2298788-2298576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
124-285
               

               
Cow position:
               
chr20:19459666-19459505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
124-316
               

               
Cow position:
               
chr20:10818243-10818051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
10, 59
               

               
Conread position:
               
124-347
               

               
Cow position:
               
chr20:3148684-3148900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
124-347
               

               
Cow position:
               
chr20:5364929-5365148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
12, 21
               

               
Conread position:
               
126-309
               

               
Cow position:
               
chr20:20158136-20158319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
9, 172
               

               
Conread position:
               
127-347
               

               
Cow position:
               
chr20:16935308-16935088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
149, 64
               

               
Conread position:
               
130-269
               

               
Cow position:
               
chr20:11392782-11392921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
8, 29
               

               
Conread position:
               
132-347
               

               
Cow position:
               
chr20:2819553-2819767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
68, 8
               

               
Conread position:
               
132-347
               

               
Cow position:
               
chr20:25009626-25009414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
16, 36
               

               
Conread position:
               
133-275
               

               
Cow position:
               
chr20:14759657-14759515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
133-288
               

               
Cow position:
               
chr20:33623543-33623392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
133-290
               

               
Cow position:
               
chr20:8912491-8912332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
134-347
               

               
Cow position:
               
chr20:24097010-24097214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
48, 54
               

               
Conread position:
               
138-298
               

               
Cow position:
               
chr20:23678705-23678540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
139-279
               

               
Cow position:
               
chr20:8817477-8817337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
140-287
               

               
Cow position:
               
chr20:35407867-35408013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
8, 43
               

               
Conread position:
               
140-292
               

               
Cow position:
               
chr20:4334515-4334362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
140-292
               

               
Cow position:
               
chr20:13752238-13752391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
60, 136
               

               
Conread position:
               
140-293
               

               
Cow position:
               
chr20:42458841-42458688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
140-297
               

               
Cow position:
               
chr20:5703486-5703644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
140-328
               

               
Cow position:
               
chr20:26077653-26077467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
142-341
               

               
Cow position:
               
chr20:15766128-15766325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
62, 9
               

               
Conread position:
               
143-336
               

               
Cow position:
               
chr20:35445085-35444895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
143, 160
               

               
Conread position:
               
143-346
               

               
Cow position:
               
chr20:30744703-30744503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
39, 52
               

               
Conread position:
               
144-291
               

               
Cow position:
               
chr20:2204665-2204520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
144-347
               

               
Cow position:
               
chr20:382109-381914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
145-347
               

               
Cow position:
               
chr20:3564180-3564372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
149-298
               

               
Cow position:
               
chr20:39155439-39155585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
153-346
               

               
Cow position:
               
chr20:39269057-39268864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
161, 119
               

               
Conread position:
               
153-347
               

               
Cow position:
               
chr20:36312480-36312292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
183, 130
               

               
Conread position:
               
157-298
               

               
Cow position:
               
chr20:24315001-24314859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
119, 77
               

               
Conread position:
               
158-288
               

               
Cow position:
               
chr20:34372669-34372541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
28, 50
               

               
Conread position:
               
160-347
               

               
Cow position:
               
chr20:19636141-19635959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
176, 129
               

               
Conread position:
               
161-310
               

               
Cow position:
               
chr20:21325362-21325514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
162-345
               

               
Cow position:
               
chr20:23358454-23358277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
164-292
               

               
Cow position:
               
chr20:26905713-26905841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
11, 120
               

               
Conread position:
               
164-347
               

               
Cow position:
               
chr20:26041059-26040878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
110, 140
               

               
Conread position:
               
166-334
               

               
Cow position:
               
chr20:630566-630730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
167-347
               

               
Cow position:
               
chr20:19834788-19834612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
175-347
               

               
Cow position:
               
chr20:20590251-20590085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
177-293
               

               
Cow position:
               
chr20:20312458-20312342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
178-298
               

               
Cow position:
               
chr20:21535680-21535559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
184-295
               

               
Cow position:
               
chr20:19091082-19090970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
188-297
               

               
Cow position:
               
chr20:34835651-34835542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
191-323
               

               
Cow position:
               
chr20:36023334-36023201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
194-297
               

               
Cow position:
               
chr20:15515371-15515268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
194-323
               

               
Cow position:
               
chr20:37229015-37228884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
194-345
               

               
Cow position:
               
chr20:16977775-16977620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
83, 97
               

               
Conread position:
               
195-298
               

               
Cow position:
               
chr20:26387531-26387634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
203-296
               

               
Cow position:
               
chr20:15732060-15731962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
99
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
203-347
               

               
Cow position:
               
chr20:37357934-37358078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
110, 80
               

               
Conread position:
               
207-347
               

               
Cow position:
               
chr20:38061684-38061554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
214-344
               

               
Cow position:
               
chr20:23506024-23506153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
100, 72
               
Show alignments to all cow chromosomes.