• Home
• Research
• Resources
• Publications
• About
• People
• Events
• Jobs
• News
• Contact

Cow genome map

           
Conread name:
           
rcmu31_n5.y1
        

               
Conread position:
               
1-281
               

               
Cow position:
               
chr9:20848123-20847851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
15, 26
               

               
Conread position:
               
1-310
               

               
Cow position:
               
chr9:29819924-29819609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
57, 140
               

               
Conread position:
               
1-347
               

               
Cow position:
               
chr9:51620628-51620297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
26, 13
               

               
Conread position:
               
18-319
               

               
Cow position:
               
chr9:52513263-52513570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
40, 127
               

               
Conread position:
               
41-288
               

               
Cow position:
               
chr9:9624854-9625102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
7, 41
               

               
Conread position:
               
41-347
               

               
Cow position:
               
chr9:33823275-33822970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
7, 56
               

               
Conread position:
               
44-347
               

               
Cow position:
               
chr9:17840525-17840826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 41
               

               
Conread position:
               
46-279
               

               
Cow position:
               
chr9:26344822-26345051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
100, 29
               

               
Conread position:
               
47-340
               

               
Cow position:
               
chr9:16300413-16300717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
70, 14
               

               
Conread position:
               
50-310
               

               
Cow position:
               
chr9:6596092-6596342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
51-245
               

               
Cow position:
               
chr9:54924764-54924572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
83, 16
               

               
Conread position:
               
51-345
               

               
Cow position:
               
chr9:9312003-9311714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
92, 34
               

               
Conread position:
               
54-287
               

               
Cow position:
               
chr9:42445841-42446074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
75, 19
               

               
Conread position:
               
54-288
               

               
Cow position:
               
chr9:51720764-51720988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
54-291
               

               
Cow position:
               
chr9:5500996-5500758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
79, 19
               

               
Conread position:
               
54-297
               

               
Cow position:
               
chr9:29825175-29824929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
90, 26
               

               
Conread position:
               
54-345
               

               
Cow position:
               
chr9:26279033-26279318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
248, 13
               

               
Conread position:
               
54-347
               

               
Cow position:
               
chr9:4262954-4263236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
82, 33
               

               
Conread position:
               
54-347
               

               
Cow position:
               
chr9:28726582-28726876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
73, 19
               

               
Conread position:
               
56-298
               

               
Cow position:
               
chr9:31078946-31079180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
56-347
               

               
Cow position:
               
chr9:50382180-50382465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
21, 159
               

               
Conread position:
               
58-336
               

               
Cow position:
               
chr9:5836289-5836009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
146, 17
               

               
Conread position:
               
58-347
               

               
Cow position:
               
chr9:5342116-5342393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
45, 16
               

               
Conread position:
               
64-295
               

               
Cow position:
               
chr9:38645214-38645442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
68, 23
               

               
Conread position:
               
69-292
               

               
Cow position:
               
chr9:42478357-42478577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
73-297
               

               
Cow position:
               
chr9:51204857-51204632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
30, 16
               

               
Conread position:
               
75-291
               

               
Cow position:
               
chr9:35167289-35167082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
53, 12
               

               
Conread position:
               
75-319
               

               
Cow position:
               
chr9:18380981-18380743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
224, 5
               

               
Conread position:
               
75-336
               

               
Cow position:
               
chr9:6189252-6189499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
76-312
               

               
Cow position:
               
chr9:40005594-40005360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
76-323
               

               
Cow position:
               
chr9:9654193-9654435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
57, 21
               

               
Conread position:
               
76-328
               

               
Cow position:
               
chr9:8636788-8636535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
228, 211
               

               
Conread position:
               
76-346
               

               
Cow position:
               
chr9:22443509-22443769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
77-347
               

               
Cow position:
               
chr9:3378870-3378615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
78-300
               

               
Cow position:
               
chr9:6879888-6879676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
49, 7
               

               
Conread position:
               
78-317
               

               
Cow position:
               
chr9:43443917-43443683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
166, 7
               

               
Conread position:
               
79-279
               

               
Cow position:
               
chr9:49293030-49293225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
79-294
               

               
Cow position:
               
chr9:57897003-57897207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
79-345
               

               
Cow position:
               
chr9:23388562-23388825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
60, 20
               

               
Conread position:
               
92-310
               

               
Cow position:
               
chr9:56011603-56011386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
7, 45
               

               
Conread position:
               
93-347
               

               
Cow position:
               
chr9:6954144-6954400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
37, 222
               

               
Conread position:
               
94-266
               

               
Cow position:
               
chr9:64344893-64345065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
14, 51
               

               
Conread position:
               
94-310
               

               
Cow position:
               
chr9:52407269-52407052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
5, 163
               

               
Conread position:
               
94-319
               

               
Cow position:
               
chr9:50080944-50081161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
5, 34
               

               
Conread position:
               
94-345
               

               
Cow position:
               
chr9:29194920-29195177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
5, 22
               

               
Conread position:
               
95-298
               

               
Cow position:
               
chr9:44770097-44770292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
40, 104
               

               
Conread position:
               
97-287
               

               
Cow position:
               
chr9:25400098-25400289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
31, 79
               

               
Conread position:
               
97-293
               

               
Cow position:
               
chr9:1877909-1878098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
97-294
               

               
Cow position:
               
chr9:18217001-18217196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
97-297
               

               
Cow position:
               
chr9:33598079-33597886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
97-298
               

               
Cow position:
               
chr9:9443505-9443703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
190, 46
               

               
Conread position:
               
97-323
               

               
Cow position:
               
chr9:1520639-1520866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
115, 40
               

               
Conread position:
               
97-341
               

               
Cow position:
               
chr9:5163885-5164129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
49, 40
               

               
Conread position:
               
97-343
               

               
Cow position:
               
chr9:41728357-41728117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 21
               

               
Conread position:
               
97-344
               

               
Cow position:
               
chr9:6192363-6192601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
39, 52
               

               
Conread position:
               
97-347
               

               
Cow position:
               
chr9:6952206-6951965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
33, 112
               

               
Conread position:
               
97-347
               

               
Cow position:
               
chr9:33114445-33114192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
33, 44
               

               
Conread position:
               
97-347
               

               
Cow position:
               
chr9:33940703-33940449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
185, 41
               

               
Conread position:
               
97-347
               

               
Cow position:
               
chr9:40215340-40215100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
97-347
               

               
Cow position:
               
chr9:61022709-61022474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
189, 43
               

               
Conread position:
               
98-222
               

               
Cow position:
               
chr9:1893948-1894069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
98-226
               

               
Cow position:
               
chr9:36827233-36827106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
98-252
               

               
Cow position:
               
chr9:43875616-43875774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
98-263
               

               
Cow position:
               
chr9:41486143-41486308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
38, 143
               

               
Conread position:
               
98-271
               

               
Cow position:
               
chr9:41679843-41679673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
98-272
               

               
Cow position:
               
chr9:15225201-15225371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
98-272
               

               
Cow position:
               
chr9:24872933-24872761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
32, 105
               

               
Conread position:
               
98-272
               

               
Cow position:
               
chr9:50606851-50607020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
98-281
               

               
Cow position:
               
chr9:5077613-5077789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
36, 79
               

               
Conread position:
               
98-281
               

               
Cow position:
               
chr9:5219071-5219256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
98-281
               

               
Cow position:
               
chr9:33697127-33696952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
98-281
               

               
Cow position:
               
chr9:43871076-43870891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
98-281
               

               
Cow position:
               
chr9:55075036-55075212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
98-281
               

               
Cow position:
               
chr9:55321739-55321553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
98-281
               

               
Cow position:
               
chr9:62656899-62656719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
120, 33
               

               
Conread position:
               
98-284
               

               
Cow position:
               
chr9:23431046-23431232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
32, 52
               

               
Conread position:
               
98-287
               

               
Cow position:
               
chr9:28754917-28754729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
44, 173
               

               
Conread position:
               
98-288
               

               
Cow position:
               
chr9:4580312-4580495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
98-288
               

               
Cow position:
               
chr9:5433735-5433541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
98-288
               

               
Cow position:
               
chr9:20465863-20466050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
35, 120
               

               
Conread position:
               
98-291
               

               
Cow position:
               
chr9:55889908-55889721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
98-292
               

               
Cow position:
               
chr9:1867547-1867359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
98-292
               

               
Cow position:
               
chr9:9552190-9551996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
29, 44
               

               
Conread position:
               
98-294
               

               
Cow position:
               
chr9:11168827-11168632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
176, 40
               

               
Conread position:
               
98-294
               

               
Cow position:
               
chr9:52598626-52598818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
98-294
               

               
Cow position:
               
chr9:64091782-64091582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
98-296
               

               
Cow position:
               
chr9:56453430-56453239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
182, 17
               

               
Conread position:
               
98-296
               

               
Cow position:
               
chr9:62357431-62357627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
42, 69
               

               
Conread position:
               
98-297
               

               
Cow position:
               
chr9:56773178-56772976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
98, 31
               

               
Conread position:
               
98-298
               

               
Cow position:
               
chr9:50139384-50139184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
81, 40
               

               
Conread position:
               
98-298
               

               
Cow position:
               
chr9:64064259-64064464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
98-300
               

               
Cow position:
               
chr9:18342828-18342632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
98-300
               

               
Cow position:
               
chr9:54493236-54493034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
42, 187
               

               
Conread position:
               
98-300
               

               
Cow position:
               
chr9:64050463-64050664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
29, 17
               

               
Conread position:
               
98-304
               

               
Cow position:
               
chr9:9403078-9403286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
86, 40
               

               
Conread position:
               
98-304
               

               
Cow position:
               
chr9:41781751-41781549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
98-305
               

               
Cow position:
               
chr9:7634371-7634163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
98-310
               

               
Cow position:
               
chr9:5327353-5327145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
98-310
               

               
Cow position:
               
chr9:21080660-21080453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
98-310
               

               
Cow position:
               
chr9:58451982-58452187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
98-310
               

               
Cow position:
               
chr9:61303101-61302886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
98-312
               

               
Cow position:
               
chr9:19067882-19067668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
29, 44
               

               
Conread position:
               
98-313
               

               
Cow position:
               
chr9:10819735-10819943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
98-317
               

               
Cow position:
               
chr9:50543325-50543552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
29, 170
               

               
Conread position:
               
98-319
               

               
Cow position:
               
chr9:5245959-5245734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
28, 42
               

               
Conread position:
               
98-319
               

               
Cow position:
               
chr9:17310465-17310687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
28, 42
               

               
Conread position:
               
98-323
               

               
Cow position:
               
chr9:26310606-26310381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
36, 175
               

               
Conread position:
               
98-323
               

               
Cow position:
               
chr9:32981974-32982200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
36, 43
               

               
Conread position:
               
98-326
               

               
Cow position:
               
chr9:36445726-36445486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
98-331
               

               
Cow position:
               
chr9:52839789-52840014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
84, 28
               

               
Conread position:
               
98-332
               

               
Cow position:
               
chr9:21888264-21888037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
98-335
               

               
Cow position:
               
chr9:33119788-33120026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 186
               

               
Conread position:
               
98-335
               

               
Cow position:
               
chr9:43757639-43757406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
90, 32
               

               
Conread position:
               
98-336
               

               
Cow position:
               
chr9:5263599-5263366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
36, 108
               

               
Conread position:
               
98-336
               

               
Cow position:
               
chr9:20416411-20416650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
195, 99
               

               
Conread position:
               
98-336
               

               
Cow position:
               
chr9:32676775-32676538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
159, 42
               

               
Conread position:
               
98-340
               

               
Cow position:
               
chr9:1973039-1972804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
206, 40
               

               
Conread position:
               
98-341
               

               
Cow position:
               
chr9:10144379-10144626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
46, 88
               

               
Conread position:
               
98-342
               

               
Cow position:
               
chr9:45171121-45171369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
27, 217
               

               
Conread position:
               
98-342
               

               
Cow position:
               
chr9:52578438-52578693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
36, 195
               

               
Conread position:
               
98-345
               

               
Cow position:
               
chr9:13670734-13670491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
33, 18
               

               
Conread position:
               
98-347
               

               
Cow position:
               
chr9:8998454-8998206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
29, 191
               

               
Conread position:
               
98-347
               

               
Cow position:
               
chr9:9460073-9459842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
117, 31
               

               
Conread position:
               
98-347
               

               
Cow position:
               
chr9:11299593-11299820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
98-347
               

               
Cow position:
               
chr9:12910304-12910547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
34, 42
               

               
Conread position:
               
98-347
               

               
Cow position:
               
chr9:17872009-17872254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 193
               

               
Conread position:
               
98-347
               

               
Cow position:
               
chr9:20091145-20090913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
86, 42
               

               
Conread position:
               
98-347
               

               
Cow position:
               
chr9:20579502-20579735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
25, 70
               

               
Conread position:
               
98-347
               

               
Cow position:
               
chr9:29006660-29006412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 177
               

               
Conread position:
               
98-347
               

               
Cow position:
               
chr9:29339225-29339459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
31, 77
               

               
Conread position:
               
98-347
               

               
Cow position:
               
chr9:30124018-30123783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
37, 10
               

               
Conread position:
               
98-347
               

               
Cow position:
               
chr9:32307139-32307381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
216, 24
               

               
Conread position:
               
98-347
               

               
Cow position:
               
chr9:33218852-33219104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
29, 72
               

               
Conread position:
               
98-347
               

               
Cow position:
               
chr9:34689498-34689752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
34, 111
               

               
Conread position:
               
98-347
               

               
Cow position:
               
chr9:36490794-36491051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
27, 186
               

               
Conread position:
               
98-347
               

               
Cow position:
               
chr9:38846246-38846488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
206, 29
               

               
Conread position:
               
98-347
               

               
Cow position:
               
chr9:41283111-41282865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
216, 38
               

               
Conread position:
               
98-347
               

               
Cow position:
               
chr9:42497923-42497681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
29, 135
               

               
Conread position:
               
98-347
               

               
Cow position:
               
chr9:45285429-45285686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
29, 200
               

               
Conread position:
               
98-347
               

               
Cow position:
               
chr9:53109350-53109104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
46, 106
               

               
Conread position:
               
98-347
               

               
Cow position:
               
chr9:55256453-55256696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
55, 35
               

               
Conread position:
               
98-347
               

               
Cow position:
               
chr9:58979495-58979258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
86, 28
               

               
Conread position:
               
99-260
               

               
Cow position:
               
chr9:8534592-8534753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
99-281
               

               
Cow position:
               
chr9:7952998-7952817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
94, 48
               

               
Conread position:
               
99-283
               

               
Cow position:
               
chr9:32371664-32371837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
99-295
               

               
Cow position:
               
chr9:5594598-5594406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
99-298
               

               
Cow position:
               
chr9:1751434-1751236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
85, 37
               

               
Conread position:
               
99-298
               

               
Cow position:
               
chr9:59013236-59013440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
32, 116
               

               
Conread position:
               
99-323
               

               
Cow position:
               
chr9:54528608-54528384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
183, 40
               

               
Conread position:
               
99-347
               

               
Cow position:
               
chr9:12225881-12226132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
28, 48
               

               
Conread position:
               
99-347
               

               
Cow position:
               
chr9:34374833-34375074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
205, 16
               

               
Conread position:
               
99-347
               

               
Cow position:
               
chr9:59997936-59998177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
47, 104
               

               
Conread position:
               
99-347
               

               
Cow position:
               
chr9:64106003-64105756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
28, 178
               

               
Conread position:
               
101-336
               

               
Cow position:
               
chr9:39011375-39011606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
101-346
               

               
Cow position:
               
chr9:8628821-8629058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
42, 104
               

               
Conread position:
               
102-270
               

               
Cow position:
               
chr9:49417080-49416914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
23, 36
               

               
Conread position:
               
102-272
               

               
Cow position:
               
chr9:46316690-46316856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
102-274
               

               
Cow position:
               
chr9:19493370-19493543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
25, 43
               

               
Conread position:
               
102-275
               

               
Cow position:
               
chr9:60027295-60027119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
102-276
               

               
Cow position:
               
chr9:767060-767228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
84, 44
               

               
Conread position:
               
102-279
               

               
Cow position:
               
chr9:5227077-5227257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
30, 53
               

               
Conread position:
               
102-279
               

               
Cow position:
               
chr9:21387516-21387338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
26, 59
               

               
Conread position:
               
102-282
               

               
Cow position:
               
chr9:44921297-44921487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
102-283
               

               
Cow position:
               
chr9:58670832-58670659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
43, 34
               

               
Conread position:
               
102-290
               

               
Cow position:
               
chr9:45756460-45756271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
37, 155
               

               
Conread position:
               
102-294
               

               
Cow position:
               
chr9:13460325-13460513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
32, 93
               

               
Conread position:
               
102-294
               

               
Cow position:
               
chr9:55084204-55084398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
24, 96
               

               
Conread position:
               
102-298
               

               
Cow position:
               
chr9:3738128-3738323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
38, 19
               

               
Conread position:
               
102-298
               

               
Cow position:
               
chr9:19555467-19555277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
37, 12
               

               
Conread position:
               
102-298
               

               
Cow position:
               
chr9:28354614-28354418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
42, 174
               

               
Conread position:
               
102-298
               

               
Cow position:
               
chr9:32669854-32670048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
102-298
               

               
Cow position:
               
chr9:43342423-43342230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
102-298
               

               
Cow position:
               
chr9:62668347-62668149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
25, 157
               

               
Conread position:
               
102-303
               

               
Cow position:
               
chr9:23797330-23797131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
25, 15
               

               
Conread position:
               
102-303
               

               
Cow position:
               
chr9:41394555-41394755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
185, 28
               

               
Conread position:
               
102-310
               

               
Cow position:
               
chr9:3186221-3186012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
197, 0
               

               
Conread position:
               
102-315
               

               
Cow position:
               
chr9:9199687-9199898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
54, 40
               

               
Conread position:
               
102-319
               

               
Cow position:
               
chr9:5509817-5509604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
177, 28
               

               
Conread position:
               
102-319
               

               
Cow position:
               
chr9:11303986-11304193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
102-320
               

               
Cow position:
               
chr9:4267890-4268106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 14
               

               
Conread position:
               
102-320
               

               
Cow position:
               
chr9:9461562-9461776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
25, 47
               

               
Conread position:
               
102-323
               

               
Cow position:
               
chr9:5763538-5763757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
202, 94
               

               
Conread position:
               
102-323
               

               
Cow position:
               
chr9:11313418-11313641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
154, 42
               

               
Conread position:
               
102-323
               

               
Cow position:
               
chr9:11319540-11319761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
32, 13
               

               
Conread position:
               
102-323
               

               
Cow position:
               
chr9:39681433-39681209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
181, 38
               

               
Conread position:
               
102-331
               

               
Cow position:
               
chr9:1938226-1937993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
36, 205
               

               
Conread position:
               
102-336
               

               
Cow position:
               
chr9:13205472-13205708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
14, 110
               

               
Conread position:
               
102-336
               

               
Cow position:
               
chr9:58614578-58614362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
102-345
               

               
Cow position:
               
chr9:9753300-9753548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
172, 36
               

               
Conread position:
               
102-345
               

               
Cow position:
               
chr9:15805827-15806071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
47, 160
               

               
Conread position:
               
102-345
               

               
Cow position:
               
chr9:38624531-38624772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
200, 48
               

               
Conread position:
               
102-345
               

               
Cow position:
               
chr9:52267663-52267906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
25, 36
               

               
Conread position:
               
102-345
               

               
Cow position:
               
chr9:55795854-55795613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
27, 101
               

               
Conread position:
               
102-347
               

               
Cow position:
               
chr9:13169568-13169812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
171, 220
               

               
Conread position:
               
102-347
               

               
Cow position:
               
chr9:13743839-13744081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
215, 23
               

               
Conread position:
               
102-347
               

               
Cow position:
               
chr9:23955890-23956124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
102-347
               

               
Cow position:
               
chr9:27279402-27279159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
200, 36
               

               
Conread position:
               
102-347
               

               
Cow position:
               
chr9:31359694-31359458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
95, 24
               

               
Conread position:
               
102-347
               

               
Cow position:
               
chr9:33584589-33584831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
33, 66
               

               
Conread position:
               
102-347
               

               
Cow position:
               
chr9:34286896-34286651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 211
               

               
Conread position:
               
102-347
               

               
Cow position:
               
chr9:34957959-34958199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 176
               

               
Conread position:
               
102-347
               

               
Cow position:
               
chr9:35028073-35028314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
103, 36
               

               
Conread position:
               
102-347
               

               
Cow position:
               
chr9:38793107-38792868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
132, 28
               

               
Conread position:
               
102-347
               

               
Cow position:
               
chr9:38941338-38941584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
202, 45
               

               
Conread position:
               
102-347
               

               
Cow position:
               
chr9:48628124-48627876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 198
               

               
Conread position:
               
102-347
               

               
Cow position:
               
chr9:52754763-52754999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
180, 34
               

               
Conread position:
               
102-347
               

               
Cow position:
               
chr9:53762792-53762552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
34, 198
               

               
Conread position:
               
102-347
               

               
Cow position:
               
chr9:61739019-61738774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
27, 45
               

               
Conread position:
               
103-279
               

               
Cow position:
               
chr9:26403877-26403703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
23, 35
               

               
Conread position:
               
103-294
               

               
Cow position:
               
chr9:19903173-19902985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
103-297
               

               
Cow position:
               
chr9:17411099-17411295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
179, 0
               

               
Conread position:
               
103-298
               

               
Cow position:
               
chr9:9405956-9406154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
103-309
               

               
Cow position:
               
chr9:44831960-44832163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
27, 106
               

               
Conread position:
               
103-309
               

               
Cow position:
               
chr9:63896634-63896429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
24, 98
               

               
Conread position:
               
103-345
               

               
Cow position:
               
chr9:17799722-17799490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
30, 47
               

               
Conread position:
               
103-345
               

               
Cow position:
               
chr9:55287799-55288034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
103-347
               

               
Cow position:
               
chr9:6840094-6839844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
24, 209
               

               
Conread position:
               
103-347
               

               
Cow position:
               
chr9:8834037-8834278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
23, 81
               

               
Conread position:
               
103-347
               

               
Cow position:
               
chr9:26477309-26477065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
14, 36
               

               
Conread position:
               
104-266
               

               
Cow position:
               
chr9:40776889-40776729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
104-272
               

               
Cow position:
               
chr9:38289233-38289397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
104-294
               

               
Cow position:
               
chr9:7409869-7409665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
104-296
               

               
Cow position:
               
chr9:1729580-1729773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
23, 14
               

               
Conread position:
               
104-323
               

               
Cow position:
               
chr9:55532907-55532688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
156, 147
               

               
Conread position:
               
104-344
               

               
Cow position:
               
chr9:15215594-15215834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
198, 179
               

               
Conread position:
               
104-347
               

               
Cow position:
               
chr9:8723888-8723648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
42, 92
               

               
Conread position:
               
104-347
               

               
Cow position:
               
chr9:29185041-29185287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
23, 182
               

               
Conread position:
               
104-347
               

               
Cow position:
               
chr9:30402329-30402576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
21, 53
               

               
Conread position:
               
104-347
               

               
Cow position:
               
chr9:42062193-42061946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
40, 13
               

               
Conread position:
               
106-270
               

               
Cow position:
               
chr9:49689048-49688890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
24, 82
               

               
Conread position:
               
106-297
               

               
Cow position:
               
chr9:53750865-53751062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
43, 32
               

               
Conread position:
               
106-323
               

               
Cow position:
               
chr9:59386680-59386898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
171, 5
               

               
Conread position:
               
106-345
               

               
Cow position:
               
chr9:25557065-25556838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
34, 163
               

               
Conread position:
               
106-347
               

               
Cow position:
               
chr9:28747433-28747665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
106-347
               

               
Cow position:
               
chr9:37199213-37198980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
106-347
               

               
Cow position:
               
chr9:56032229-56032464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
173, 31
               

               
Conread position:
               
107-346
               

               
Cow position:
               
chr9:45141513-45141742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
108-346
               

               
Cow position:
               
chr9:60394963-60395195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
108-347
               

               
Cow position:
               
chr9:34024789-34024552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 196
               

               
Conread position:
               
109-290
               

               
Cow position:
               
chr9:54615214-54615393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
20, 101
               

               
Conread position:
               
109-347
               

               
Cow position:
               
chr9:9686327-9686565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 31
               

               
Conread position:
               
109-347
               

               
Cow position:
               
chr9:21460064-21460300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
27, 100
               

               
Conread position:
               
111-286
               

               
Cow position:
               
chr9:3343833-3343660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
111-310
               

               
Cow position:
               
chr9:30477692-30477889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
170, 25
               

               
Conread position:
               
111-347
               

               
Cow position:
               
chr9:33542141-33541905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
99, 19
               

               
Conread position:
               
111-347
               

               
Cow position:
               
chr9:34284036-34283806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
45, 8
               

               
Conread position:
               
112-346
               

               
Cow position:
               
chr9:7805879-7806100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
113-345
               

               
Cow position:
               
chr9:8901141-8901374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
33, 144
               

               
Conread position:
               
115-288
               

               
Cow position:
               
chr9:30780195-30780027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
116-320
               

               
Cow position:
               
chr9:28686468-28686265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
172, 128
               

               
Conread position:
               
116-347
               

               
Cow position:
               
chr9:41785291-41785074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
116-347
               

               
Cow position:
               
chr9:61351259-61351492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
186, 22
               

               
Conread position:
               
118-335
               

               
Cow position:
               
chr9:17740864-17741076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
120-272
               

               
Cow position:
               
chr9:56204884-56204735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
15, 21
               

               
Conread position:
               
124-303
               

               
Cow position:
               
chr9:49545296-49545470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
124-347
               

               
Cow position:
               
chr9:24652476-24652252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
196, 14
               

               
Conread position:
               
125-281
               

               
Cow position:
               
chr9:63361648-63361803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
125-329
               

               
Cow position:
               
chr9:8562890-8562689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
179, 13
               

               
Conread position:
               
126-279
               

               
Cow position:
               
chr9:52828727-52828574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
139, 11
               

               
Conread position:
               
126-347
               

               
Cow position:
               
chr9:57131565-57131351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
128-347
               

               
Cow position:
               
chr9:23970827-23971040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
92, 162
               

               
Conread position:
               
129-345
               

               
Cow position:
               
chr9:52518756-52518966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
64, 11
               

               
Conread position:
               
130-346
               

               
Cow position:
               
chr9:2037496-2037290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
172, 7
               

               
Conread position:
               
131-262
               

               
Cow position:
               
chr9:49709911-49709782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
131-347
               

               
Cow position:
               
chr9:47214479-47214697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
171, 143
               

               
Conread position:
               
132-336
               

               
Cow position:
               
chr9:39758583-39758376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
172, 0
               

               
Conread position:
               
133-323
               

               
Cow position:
               
chr9:3782430-3782241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
169, 35
               

               
Conread position:
               
134-298
               

               
Cow position:
               
chr9:50310703-50310861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
148, 39
               

               
Conread position:
               
136-331
               

               
Cow position:
               
chr9:37069496-37069693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
70, 140
               

               
Conread position:
               
136-347
               

               
Cow position:
               
chr9:9595889-9596097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
73, 152
               

               
Conread position:
               
137-337
               

               
Cow position:
               
chr9:54932837-54933030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
51, 16
               

               
Conread position:
               
137-347
               

               
Cow position:
               
chr9:4341099-4341303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
163, 0
               

               
Conread position:
               
137-347
               

               
Cow position:
               
chr9:5104343-5104557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
143, 81
               

               
Conread position:
               
138-335
               

               
Cow position:
               
chr9:31814326-31814526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
138-336
               

               
Cow position:
               
chr9:52763701-52763892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
138-347
               

               
Cow position:
               
chr9:42586497-42586695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
138-347
               

               
Cow position:
               
chr9:58131895-58132095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
139-262
               

               
Cow position:
               
chr9:38799428-38799551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
139-280
               

               
Cow position:
               
chr9:62907964-62908102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
140-294
               

               
Cow position:
               
chr9:33151799-33151645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
140-310
               

               
Cow position:
               
chr9:8992122-8992296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
140-310
               

               
Cow position:
               
chr9:22466829-22466660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
157, 0
               

               
Conread position:
               
140-316
               

               
Cow position:
               
chr9:64155794-64155970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
140-322
               

               
Cow position:
               
chr9:19758776-19758593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
142, 25
               

               
Conread position:
               
140-336
               

               
Cow position:
               
chr9:43159809-43159617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
46, 25
               

               
Conread position:
               
140-345
               

               
Cow position:
               
chr9:36628175-36627977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
159, 124
               

               
Conread position:
               
140-346
               

               
Cow position:
               
chr9:12337959-12337754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
134, 172
               

               
Conread position:
               
140-347
               

               
Cow position:
               
chr9:58368940-58369140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
141-280
               

               
Cow position:
               
chr9:31098828-31098969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
141-297
               

               
Cow position:
               
chr9:56827537-56827376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
141-347
               

               
Cow position:
               
chr9:24887262-24887058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
170, 0
               

               
Conread position:
               
142-275
               

               
Cow position:
               
chr9:6685954-6685821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
142-287
               

               
Cow position:
               
chr9:1059263-1059124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
142-323
               

               
Cow position:
               
chr9:44467285-44467468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
81, 29
               

               
Conread position:
               
142-345
               

               
Cow position:
               
chr9:4241461-4241262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
101, 149
               

               
Conread position:
               
143-306
               

               
Cow position:
               
chr9:10308947-10309103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
143-337
               

               
Cow position:
               
chr9:52258013-52258203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
171, 60
               

               
Conread position:
               
143-347
               

               
Cow position:
               
chr9:22440428-22440620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
143-347
               

               
Cow position:
               
chr9:49402704-49402501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
41, 6
               

               
Conread position:
               
144-336
               

               
Cow position:
               
chr9:53390132-53390344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
145-318
               

               
Cow position:
               
chr9:16137290-16137463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
147-298
               

               
Cow position:
               
chr9:59699497-59699649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
149-294
               

               
Cow position:
               
chr9:55354659-55354514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
150-291
               

               
Cow position:
               
chr9:3924490-3924349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
97, 59
               

               
Conread position:
               
150-294
               

               
Cow position:
               
chr9:1733391-1733247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
153-297
               

               
Cow position:
               
chr9:61547742-61547602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
124, 44
               

               
Conread position:
               
153-347
               

               
Cow position:
               
chr9:27345540-27345736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
153, 114
               

               
Conread position:
               
154-319
               

               
Cow position:
               
chr9:6293638-6293473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
123, 149
               

               
Conread position:
               
154-347
               

               
Cow position:
               
chr9:11098413-11098598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
123, 43
               

               
Conread position:
               
155-287
               

               
Cow position:
               
chr9:13742565-13742433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
155-288
               

               
Cow position:
               
chr9:60355170-60355304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
155-298
               

               
Cow position:
               
chr9:35832577-35832719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
155-323
               

               
Cow position:
               
chr9:24243679-24243850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
155-331
               

               
Cow position:
               
chr9:34014207-34014380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
155-347
               

               
Cow position:
               
chr9:22165671-22165864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
122, 112
               

               
Conread position:
               
159-295
               

               
Cow position:
               
chr9:35793715-35793579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
161-321
               

               
Cow position:
               
chr9:52807369-52807530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
118, 19
               

               
Conread position:
               
162-326
               

               
Cow position:
               
chr9:34065513-34065678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
22, 142
               

               
Conread position:
               
163-288
               

               
Cow position:
               
chr9:18226701-18226826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
166-342
               

               
Cow position:
               
chr9:43202365-43202193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
167-347
               

               
Cow position:
               
chr9:34707282-34707457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
170-281
               

               
Cow position:
               
chr9:49830872-49830761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
5, 62
               

               
Conread position:
               
171-300
               

               
Cow position:
               
chr9:34079072-34079200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
111, 38
               

               
Conread position:
               
171-347
               

               
Cow position:
               
chr9:12773716-12773547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
171-347
               

               
Cow position:
               
chr9:44944452-44944620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
11, 17
               

               
Conread position:
               
173-296
               

               
Cow position:
               
chr9:53045322-53045445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
174-296
               

               
Cow position:
               
chr9:53496731-53496849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
174-321
               

               
Cow position:
               
chr9:26277851-26277708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
174-347
               

               
Cow position:
               
chr9:19718317-19718481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
175-343
               

               
Cow position:
               
chr9:59897611-59897453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
175-343
               

               
Cow position:
               
chr9:64310757-64310922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
139, 32
               

               
Conread position:
               
175-347
               

               
Cow position:
               
chr9:26394328-26394495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
176-345
               

               
Cow position:
               
chr9:5186846-5187005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
176-347
               

               
Cow position:
               
chr9:3847423-3847248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
177-347
               

               
Cow position:
               
chr9:1712686-1712855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
137, 94
               

               
Conread position:
               
178-347
               

               
Cow position:
               
chr9:24079321-24079158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
179-347
               

               
Cow position:
               
chr9:55807649-55807487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
181-347
               

               
Cow position:
               
chr9:9495172-9495012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
182-333
               

               
Cow position:
               
chr9:19771377-19771228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
187-284
               

               
Cow position:
               
chr9:50505036-50505133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
98
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
187-292
               

               
Cow position:
               
chr9:32773223-32773118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
187-313
               

               
Cow position:
               
chr9:8535877-8535752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
187-321
               

               
Cow position:
               
chr9:46190152-46190017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
187-323
               

               
Cow position:
               
chr9:23403828-23403688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
187-325
               

               
Cow position:
               
chr9:54998887-54999025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
102, 114
               

               
Conread position:
               
187-333
               

               
Cow position:
               
chr9:48900826-48900972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
127, 113
               

               
Conread position:
               
187-341
               

               
Cow position:
               
chr9:5172522-5172675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
7, 127
               

               
Conread position:
               
187-347
               

               
Cow position:
               
chr9:40984515-40984357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
191-347
               

               
Cow position:
               
chr9:11209439-11209600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
106, 29
               

               
Conread position:
               
193-275
               

               
Cow position:
               
chr9:39654410-39654328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
83
               

               
Alignm identity:
               
76
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
194-298
               

               
Cow position:
               
chr9:32052279-32052175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
194-347
               

               
Cow position:
               
chr9:61300974-61301124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
195-347
               

               
Cow position:
               
chr9:34265097-34264936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
87, 149
               

               
Conread position:
               
195-347
               

               
Cow position:
               
chr9:45740140-45740291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
82, 111
               

               
Conread position:
               
196-336
               

               
Cow position:
               
chr9:11873303-11873436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
196-347
               

               
Cow position:
               
chr9:23840393-23840552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
198-288
               

               
Cow position:
               
chr9:33399086-33398996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
91
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
199-311
               

               
Cow position:
               
chr9:5358009-5357899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
199-342
               

               
Cow position:
               
chr9:52998382-52998522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
200-343
               

               
Cow position:
               
chr9:11380649-11380788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
200-347
               

               
Cow position:
               
chr9:44918283-44918425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
134, 96
               

               
Conread position:
               
204-287
               

               
Cow position:
               
chr9:34666437-34666354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
84
               

               
Alignm identity:
               
74
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
204-296
               

               
Cow position:
               
chr9:2951515-2951607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
93
               

               
Alignm identity:
               
78
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
204-347
               

               
Cow position:
               
chr9:53323791-53323934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
110, 96
               

               
Conread position:
               
205-347
               

               
Cow position:
               
chr9:28773131-28772994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
215-347
               

               
Cow position:
               
chr9:30194993-30194864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
54, 76
               
Show alignments to all cow chromosomes.