• Home
• Research
• Resources
• Publications
• About
• People
• Events
• Jobs
• News
• Contact

Cow genome map

           
Conread name:
           
rcmu32_e21.y1
        

               
Conread position:
               
1-104
               

               
Cow position:
               
chrX:19188825-19188929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
1-107
               

               
Cow position:
               
chrX:37048688-37048583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
1-108
               

               
Cow position:
               
chrX:35284507-35284615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
1-118
               

               
Cow position:
               
chrX:35609876-35609993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
27, 106
               

               
Conread position:
               
1-135
               

               
Cow position:
               
chrX:32747571-32747704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
28, 110
               

               
Conread position:
               
1-138
               

               
Cow position:
               
chrX:40116309-40116440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
1-139
               

               
Cow position:
               
chrX:23497780-23497643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
1-148
               

               
Cow position:
               
chrX:17908398-17908255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
1-153
               

               
Cow position:
               
chrX:41743799-41743952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
1-156
               

               
Cow position:
               
chrX:36961527-36961682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
31, 109
               

               
Conread position:
               
1-158
               

               
Cow position:
               
chrX:16055099-16055256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
30, 75
               

               
Conread position:
               
1-159
               

               
Cow position:
               
chrX:14924887-14925044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
24, 97
               

               
Conread position:
               
1-159
               

               
Cow position:
               
chrX:28836015-28835858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
113, 20
               

               
Conread position:
               
1-164
               

               
Cow position:
               
chrX:42994504-42994662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
28, 43
               

               
Conread position:
               
1-169
               

               
Cow position:
               
chrX:41167077-41166908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
1-174
               

               
Cow position:
               
chrX:17497973-17498145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
163, 85
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chrX:26875995-26875811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
112, 94
               

               
Conread position:
               
1-188
               

               
Cow position:
               
chrX:6234565-6234376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
1-188
               

               
Cow position:
               
chrX:13785475-13785287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
113, 104
               

               
Conread position:
               
1-194
               

               
Cow position:
               
chrX:11589700-11589509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
27, 109
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chrX:19003188-19003374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
1-202
               

               
Cow position:
               
chrX:20709963-20710161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chrX:12405499-12405291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chrX:26440891-26440691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
28, 108
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chrX:27685135-27685349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
28, 110
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chrX:44873673-44873459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
27, 174
               

               
Conread position:
               
1-224
               

               
Cow position:
               
chrX:27680287-27680507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
112, 42
               

               
Conread position:
               
1-225
               

               
Cow position:
               
chrX:2467771-2467994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
25, 85
               

               
Conread position:
               
1-230
               

               
Cow position:
               
chrX:38936588-38936815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
107, 22
               

               
Conread position:
               
1-234
               

               
Cow position:
               
chrX:21566290-21566526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chrX:11082726-11082502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
101, 58
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chrX:25338071-25338306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
37, 208
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chrX:26625782-26625548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
107, 41
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chrX:48195152-48194913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
27, 236
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chrX:42171408-42171170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
104, 117
               

               
Conread position:
               
1-243
               

               
Cow position:
               
chrX:11939039-11938805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
156, 72
               

               
Conread position:
               
1-243
               

               
Cow position:
               
chrX:35413508-35413739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
69, 106
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chrX:39558462-39558220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
170, 180
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chrX:7161948-7162187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
108, 83
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chrX:37232301-37232538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chrX:42470053-42469810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
116, 40
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chrX:47481688-47481927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
24, 109
               

               
Conread position:
               
1-251
               

               
Cow position:
               
chrX:917476-917232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chrX:10412097-10411847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
227, 53
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chrX:29120934-29121185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
1-255
               

               
Cow position:
               
chrX:1503226-1503467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
113, 68
               

               
Conread position:
               
1-255
               

               
Cow position:
               
chrX:7646144-7646396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
207, 61
               

               
Conread position:
               
1-255
               

               
Cow position:
               
chrX:9365787-9365536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
1-255
               

               
Cow position:
               
chrX:17662705-17662458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
1-255
               

               
Cow position:
               
chrX:37986121-37986365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
94, 59
               

               
Conread position:
               
1-258
               

               
Cow position:
               
chrX:7710655-7710396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
27, 110
               

               
Conread position:
               
1-259
               

               
Cow position:
               
chrX:4043964-4043723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
1-259
               

               
Cow position:
               
chrX:5679678-5679428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
30, 81
               

               
Conread position:
               
1-259
               

               
Cow position:
               
chrX:7571792-7572050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
227, 22
               

               
Conread position:
               
1-259
               

               
Cow position:
               
chrX:9416805-9416540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
92, 100
               

               
Conread position:
               
1-259
               

               
Cow position:
               
chrX:11717896-11717639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
114, 19
               

               
Conread position:
               
1-259
               

               
Cow position:
               
chrX:43527391-43527652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
22, 112
               

               
Conread position:
               
1-259
               

               
Cow position:
               
chrX:43779959-43779708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
28, 128
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chrX:6265709-6265451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chrX:27772073-27771820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chrX:23091769-23092023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
115, 22
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chrX:17888526-17888271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chrX:34401886-34402158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
112, 129
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chrX:33493666-33493930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
246, 33
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chrX:41884526-41884259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chrX:38728625-38728890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
26, 123
               

               
Conread position:
               
1-273
               

               
Cow position:
               
chrX:45113505-45113778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
28, 141
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chrX:19273834-19273546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
1-277
               

               
Cow position:
               
chrX:17725862-17726138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
245, 116
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chrX:616374-616095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
105, 234
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chrX:619116-618847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
113, 97
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chrX:27394131-27393863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chrX:31311917-31312192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chrX:42235640-42235362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
113, 253
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chrX:45099010-45099292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
23, 272
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chrX:17630915-17630632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
108, 38
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chrX:29289468-29289748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
26, 50
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chrX:6278614-6278326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chrX:3489003-3488719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
107, 166
               

               
Conread position:
               
1-306
               

               
Cow position:
               
chrX:28866111-28865814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
88, 58
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chrX:5017526-5017215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
107, 166
               

               
Conread position:
               
1-314
               

               
Cow position:
               
chrX:13647897-13647586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
1-324
               

               
Cow position:
               
chrX:28878281-28877958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
24, 14
               

               
Conread position:
               
1-324
               

               
Cow position:
               
chrX:32820916-32821248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 107
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chrX:842044-842364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
27, 103
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chrX:4768632-4768937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
86, 22
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chrX:10831605-10831272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 160
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chrX:12309497-12309176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 9
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chrX:27228011-27228338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 115
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chrX:34238608-34238932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 51
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chrX:35542783-35543093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chrX:31294669-31294359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
270, 22
               

               
Conread position:
               
1-333
               

               
Cow position:
               
chrX:34543674-34544003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 62
               

               
Conread position:
               
1-335
               

               
Cow position:
               
chrX:20151734-20152067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
33, 184
               

               
Conread position:
               
1-337
               

               
Cow position:
               
chrX:35273244-35273593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
104, 53
               

               
Conread position:
               
1-339
               

               
Cow position:
               
chrX:29601942-29601606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
260, 0
               

               
Conread position:
               
1-339
               

               
Cow position:
               
chrX:37781223-37780889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 173
               

               
Conread position:
               
1-339
               

               
Cow position:
               
chrX:40269376-40269731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
106, 308
               

               
Conread position:
               
1-340
               

               
Cow position:
               
chrX:1499553-1499878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
27, 66
               

               
Conread position:
               
1-340
               

               
Cow position:
               
chrX:14973853-14973533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
25, 110
               

               
Conread position:
               
1-340
               

               
Cow position:
               
chrX:15007262-15006935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
28, 111
               

               
Conread position:
               
1-340
               

               
Cow position:
               
chrX:22074688-22075019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
131, 70
               

               
Conread position:
               
1-340
               

               
Cow position:
               
chrX:22482798-22482465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
113, 73
               

               
Conread position:
               
1-340
               

               
Cow position:
               
chrX:26881680-26881338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 302
               

               
Conread position:
               
1-340
               

               
Cow position:
               
chrX:42927931-42927606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
1-341
               

               
Cow position:
               
chrX:7695636-7695988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
28, 107
               

               
Conread position:
               
1-341
               

               
Cow position:
               
chrX:42247297-42246956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 22
               

               
Conread position:
               
1-343
               

               
Cow position:
               
chrX:4632964-4632627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 68
               

               
Conread position:
               
1-343
               

               
Cow position:
               
chrX:6413932-6414259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
19, 102
               

               
Conread position:
               
1-343
               

               
Cow position:
               
chrX:12249691-12250042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
100, 41
               

               
Conread position:
               
1-343
               

               
Cow position:
               
chrX:13912967-13913302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
114, 19
               

               
Conread position:
               
1-343
               

               
Cow position:
               
chrX:29542331-29542001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
202, 0
               

               
Conread position:
               
1-343
               

               
Cow position:
               
chrX:30338054-30337727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
250, 22
               

               
Conread position:
               
1-343
               

               
Cow position:
               
chrX:31442934-31442612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
28, 43
               

               
Conread position:
               
1-343
               

               
Cow position:
               
chrX:33855345-33854999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
103, 217
               

               
Conread position:
               
1-343
               

               
Cow position:
               
chrX:34792420-34792096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 99
               

               
Conread position:
               
1-343
               

               
Cow position:
               
chrX:38094635-38094299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 177
               

               
Conread position:
               
1-343
               

               
Cow position:
               
chrX:38549340-38549674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 28
               

               
Conread position:
               
1-343
               

               
Cow position:
               
chrX:38853086-38853438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
248, 71
               

               
Conread position:
               
1-343
               

               
Cow position:
               
chrX:40035554-40035215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 36
               

               
Conread position:
               
1-343
               

               
Cow position:
               
chrX:41122955-41123272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
27, 73
               

               
Conread position:
               
1-343
               

               
Cow position:
               
chrX:45430128-45429804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
1-344
               

               
Cow position:
               
chrX:36393459-36393113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 146
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chrX:44396907-44397244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
235, 31
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chrX:9201438-9201778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
107, 143
               

               
Conread position:
               
1-352
               

               
Cow position:
               
chrX:42381214-42380875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
30, 51
               

               
Conread position:
               
1-353
               

               
Cow position:
               
chrX:4399017-4399357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 62
               

               
Conread position:
               
1-353
               

               
Cow position:
               
chrX:6407437-6407780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
1-353
               

               
Cow position:
               
chrX:20584212-20584548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 249
               

               
Conread position:
               
1-353
               

               
Cow position:
               
chrX:37489614-37489967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
30, 58
               

               
Conread position:
               
1-353
               

               
Cow position:
               
chrX:38963993-38964334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 19
               

               
Conread position:
               
1-354
               

               
Cow position:
               
chrX:6488464-6488803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
25, 112
               

               
Conread position:
               
1-354
               

               
Cow position:
               
chrX:35268770-35269093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
292, 59
               

               
Conread position:
               
1-354
               

               
Cow position:
               
chrX:43115039-43115387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
11, 88
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chrX:16762654-16763009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 65
               

               
Conread position:
               
1-358
               

               
Cow position:
               
chrX:14884070-14883715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 267
               

               
Conread position:
               
1-358
               

               
Cow position:
               
chrX:22387355-22387001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 109
               

               
Conread position:
               
1-358
               

               
Cow position:
               
chrX:25207955-25207619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
31, 88
               

               
Conread position:
               
1-358
               

               
Cow position:
               
chrX:36356003-36356347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
341, 60
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chrX:24331666-24332020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 106
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chrX:40175055-40175420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
23, 110
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chrX:41870961-41871298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
115, 65
               

               
Conread position:
               
1-360
               

               
Cow position:
               
chrX:11655980-11656322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
1-360
               

               
Cow position:
               
chrX:34532409-34532755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
105, 73
               

               
Conread position:
               
1-360
               

               
Cow position:
               
chrX:41027045-41027408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 27
               

               
Conread position:
               
1-361
               

               
Cow position:
               
chrX:11633566-11633927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 272
               

               
Conread position:
               
1-361
               

               
Cow position:
               
chrX:27509132-27508778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 28
               

               
Conread position:
               
1-362
               

               
Cow position:
               
chrX:34315413-34315773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
115, 22
               

               
Conread position:
               
1-364
               

               
Cow position:
               
chrX:5919384-5919739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
207, 60
               

               
Conread position:
               
1-364
               

               
Cow position:
               
chrX:7351187-7351547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 107
               

               
Conread position:
               
1-364
               

               
Cow position:
               
chrX:32420107-32420458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 87
               

               
Conread position:
               
1-364
               

               
Cow position:
               
chrX:48236705-48237066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
39, 109
               

               
Conread position:
               
1-365
               

               
Cow position:
               
chrX:10865980-10865621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
23, 110
               

               
Conread position:
               
1-365
               

               
Cow position:
               
chrX:27432026-27431675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
1-365
               

               
Cow position:
               
chrX:44054690-44055053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 101
               

               
Conread position:
               
1-365
               

               
Cow position:
               
chrX:45598712-45598357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
340, 22
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chrX:870282-869932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chrX:13177577-13177233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
142, 59
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chrX:27705469-27705836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 97
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chrX:34565171-34565534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 35
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chrX:41879044-41878688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 61
               

               
Conread position:
               
1-367
               

               
Cow position:
               
chrX:9651137-9650780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
1-367
               

               
Cow position:
               
chrX:28013560-28013187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
22, 105
               

               
Conread position:
               
1-367
               

               
Cow position:
               
chrX:33466499-33466875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
144, 28
               

               
Conread position:
               
1-368
               

               
Cow position:
               
chrX:15147301-15146942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 111
               

               
Conread position:
               
1-369
               

               
Cow position:
               
chrX:27206686-27207045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
54, 78
               

               
Conread position:
               
1-369
               

               
Cow position:
               
chrX:27446578-27446935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
22, 122
               

               
Conread position:
               
1-369
               

               
Cow position:
               
chrX:29723629-29724007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
23, 103
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chrX:46587705-46588074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 266
               

               
Conread position:
               
1-372
               

               
Cow position:
               
chrX:3579832-3580205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 74
               

               
Conread position:
               
1-372
               

               
Cow position:
               
chrX:45976808-45977180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
30, 177
               

               
Conread position:
               
1-373
               

               
Cow position:
               
chrX:5872205-5872588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 80
               

               
Conread position:
               
1-374
               

               
Cow position:
               
chrX:12979939-12979577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 56
               

               
Conread position:
               
1-374
               

               
Cow position:
               
chrX:31436366-31436726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
1-374
               

               
Cow position:
               
chrX:42492627-42492263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 60
               

               
Conread position:
               
1-375
               

               
Cow position:
               
chrX:5638277-5637919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
342, 42
               

               
Conread position:
               
1-375
               

               
Cow position:
               
chrX:8917284-8917658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
23, 111
               

               
Conread position:
               
1-375
               

               
Cow position:
               
chrX:20340000-20339637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
1-375
               

               
Cow position:
               
chrX:38654542-38654175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
255, 41
               

               
Conread position:
               
1-375
               

               
Cow position:
               
chrX:40480981-40480591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
31, 110
               

               
Conread position:
               
1-376
               

               
Cow position:
               
chrX:21672443-21672824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 106
               

               
Conread position:
               
1-376
               

               
Cow position:
               
chrX:44961636-44962014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
28, 203
               

               
Conread position:
               
2-238
               

               
Cow position:
               
chrX:47967487-47967728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
26, 231
               

               
Conread position:
               
2-362
               

               
Cow position:
               
chrX:7277808-7278151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
3-350
               

               
Cow position:
               
chrX:35383126-35382808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
43, 55
               

               
Conread position:
               
4-148
               

               
Cow position:
               
chrX:38439369-38439514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
4-151
               

               
Cow position:
               
chrX:19015329-19015473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
110, 72
               

               
Conread position:
               
4-176
               

               
Cow position:
               
chrX:15139654-15139485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
165, 104
               

               
Conread position:
               
4-236
               

               
Cow position:
               
chrX:11856319-11856551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
25, 64
               

               
Conread position:
               
4-243
               

               
Cow position:
               
chrX:37910337-37910574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
109, 61
               

               
Conread position:
               
4-245
               

               
Cow position:
               
chrX:15814978-15815212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chrX:43567813-43568053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
170, 94
               

               
Conread position:
               
4-255
               

               
Cow position:
               
chrX:39415476-39415230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
4-259
               

               
Cow position:
               
chrX:8797143-8797393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 164
               

               
Conread position:
               
4-260
               

               
Cow position:
               
chrX:40692860-40692607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
4-263
               

               
Cow position:
               
chrX:17541855-17542108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
200, 55
               

               
Conread position:
               
4-263
               

               
Cow position:
               
chrX:39126224-39126475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
248, 19
               

               
Conread position:
               
4-268
               

               
Cow position:
               
chrX:45174740-45175005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
103, 39
               

               
Conread position:
               
4-275
               

               
Cow position:
               
chrX:878486-878222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
109, 46
               

               
Conread position:
               
4-275
               

               
Cow position:
               
chrX:29194125-29194390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
225, 58
               

               
Conread position:
               
4-278
               

               
Cow position:
               
chrX:13382220-13382488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
22, 107
               

               
Conread position:
               
4-278
               

               
Cow position:
               
chrX:29680369-29680099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
4-281
               

               
Cow position:
               
chrX:11614590-11614858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
23, 105
               

               
Conread position:
               
4-284
               

               
Cow position:
               
chrX:38006873-38006603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
4-297
               

               
Cow position:
               
chrX:44657072-44656781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
16, 140
               

               
Conread position:
               
4-322
               

               
Cow position:
               
chrX:23514124-23513801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
255, 92
               

               
Conread position:
               
4-324
               

               
Cow position:
               
chrX:29544987-29544678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
20, 103
               

               
Conread position:
               
4-325
               

               
Cow position:
               
chrX:1616153-1615849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 163
               

               
Conread position:
               
4-325
               

               
Cow position:
               
chrX:9635290-9634983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
255, 34
               

               
Conread position:
               
4-340
               

               
Cow position:
               
chrX:29229901-29230231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
166, 91
               

               
Conread position:
               
4-343
               

               
Cow position:
               
chrX:40557790-40557431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
244, 0
               

               
Conread position:
               
4-352
               

               
Cow position:
               
chrX:27174886-27175236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 165
               

               
Conread position:
               
4-353
               

               
Cow position:
               
chrX:45502043-45502374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
148, 39
               

               
Conread position:
               
4-360
               

               
Cow position:
               
chrX:34441561-34441210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 134
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chrX:17949599-17949245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 98
               

               
Conread position:
               
4-364
               

               
Cow position:
               
chrX:6544147-6544491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
4-369
               

               
Cow position:
               
chrX:1176088-1175736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
175, 86
               

               
Conread position:
               
4-372
               

               
Cow position:
               
chrX:4996492-4996844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
150, 25
               

               
Conread position:
               
4-372
               

               
Cow position:
               
chrX:34505156-34504797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 55
               

               
Conread position:
               
4-372
               

               
Cow position:
               
chrX:38218602-38218969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 19
               

               
Conread position:
               
4-376
               

               
Cow position:
               
chrX:7721880-7722236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
112, 172
               

               
Conread position:
               
4-376
               

               
Cow position:
               
chrX:15545784-15546141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 66
               

               
Conread position:
               
5-113
               

               
Cow position:
               
chrX:20790813-20790921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
5-133
               

               
Cow position:
               
chrX:35969195-35969068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
24, 98
               

               
Conread position:
               
5-156
               

               
Cow position:
               
chrX:35681230-35681383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
28, 117
               

               
Conread position:
               
5-158
               

               
Cow position:
               
chrX:42461852-42461701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
5-164
               

               
Cow position:
               
chrX:29509552-29509393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
23, 122
               

               
Conread position:
               
5-236
               

               
Cow position:
               
chrX:21004574-21004804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
108, 68
               

               
Conread position:
               
5-243
               

               
Cow position:
               
chrX:35224189-35224424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
5-246
               

               
Cow position:
               
chrX:1514515-1514288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
21, 62
               

               
Conread position:
               
5-246
               

               
Cow position:
               
chrX:37574743-37574971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
5-255
               

               
Cow position:
               
chrX:6260266-6260009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
21, 126
               

               
Conread position:
               
5-258
               

               
Cow position:
               
chrX:45845991-45846244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
111, 149
               

               
Conread position:
               
5-278
               

               
Cow position:
               
chrX:11085165-11084900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
23, 82
               

               
Conread position:
               
5-306
               

               
Cow position:
               
chrX:31252310-31252598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
5-310
               

               
Cow position:
               
chrX:24288032-24287739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
5-325
               

               
Cow position:
               
chrX:8730978-8731303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 172
               

               
Conread position:
               
5-336
               

               
Cow position:
               
chrX:40685439-40685109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 257
               

               
Conread position:
               
5-340
               

               
Cow position:
               
chrX:21986400-21986077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
223, 148
               

               
Conread position:
               
5-355
               

               
Cow position:
               
chrX:5680043-5679695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
21, 59
               

               
Conread position:
               
5-364
               

               
Cow position:
               
chrX:5118610-5118252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 73
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chrX:47657276-47657649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
18, 52
               

               
Conread position:
               
6-154
               

               
Cow position:
               
chrX:42874874-42875022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
21, 106
               

               
Conread position:
               
6-159
               

               
Cow position:
               
chrX:35848454-35848608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
23, 56
               

               
Conread position:
               
6-160
               

               
Cow position:
               
chrX:20752147-20752300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
25, 104
               

               
Conread position:
               
6-238
               

               
Cow position:
               
chrX:44836879-44837098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
6-238
               

               
Cow position:
               
chrX:45005523-45005746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
20, 39
               

               
Conread position:
               
6-238
               

               
Cow position:
               
chrX:45403937-45403703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
22, 103
               

               
Conread position:
               
6-238
               

               
Cow position:
               
chrX:46722844-46722612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
22, 94
               

               
Conread position:
               
6-238
               

               
Cow position:
               
chrX:47301009-47300781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
19, 40
               

               
Conread position:
               
6-238
               

               
Cow position:
               
chrX:47302983-47302755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
20, 40
               

               
Conread position:
               
6-240
               

               
Cow position:
               
chrX:22454200-22453973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
22, 72
               

               
Conread position:
               
6-242
               

               
Cow position:
               
chrX:27516421-27516646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
18, 93
               

               
Conread position:
               
6-245
               

               
Cow position:
               
chrX:19690114-19690345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
120, 67
               

               
Conread position:
               
6-254
               

               
Cow position:
               
chrX:37119488-37119731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
6-255
               

               
Cow position:
               
chrX:10959504-10959255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
90, 120
               

               
Conread position:
               
6-263
               

               
Cow position:
               
chrX:32170995-32170741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
21, 40
               

               
Conread position:
               
6-271
               

               
Cow position:
               
chrX:20697713-20697455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
26, 69
               

               
Conread position:
               
6-271
               

               
Cow position:
               
chrX:45414407-45414149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
161, 100
               

               
Conread position:
               
6-278
               

               
Cow position:
               
chrX:43730325-43730061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
6-287
               

               
Cow position:
               
chrX:14599426-14599704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 85
               

               
Conread position:
               
6-289
               

               
Cow position:
               
chrX:27119592-27119862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
18, 61
               

               
Conread position:
               
6-296
               

               
Cow position:
               
chrX:40809579-40809873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
22, 280
               

               
Conread position:
               
6-299
               

               
Cow position:
               
chrX:16416403-16416686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
25, 39
               

               
Conread position:
               
6-308
               

               
Cow position:
               
chrX:37836481-37836770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
22, 101
               

               
Conread position:
               
6-309
               

               
Cow position:
               
chrX:34662957-34662653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
22, 95
               

               
Conread position:
               
6-321
               

               
Cow position:
               
chrX:4992123-4991819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
9, 67
               

               
Conread position:
               
6-321
               

               
Cow position:
               
chrX:47484375-47484057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
22, 103
               

               
Conread position:
               
6-324
               

               
Cow position:
               
chrX:47165993-47165676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
22, 40
               

               
Conread position:
               
6-327
               

               
Cow position:
               
chrX:22821944-22822266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
45, 25
               

               
Conread position:
               
6-334
               

               
Cow position:
               
chrX:34554617-34554942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
21, 117
               

               
Conread position:
               
6-335
               

               
Cow position:
               
chrX:45875284-45875609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
26, 107
               

               
Conread position:
               
6-339
               

               
Cow position:
               
chrX:44744924-44744599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
17, 95
               

               
Conread position:
               
6-341
               

               
Cow position:
               
chrX:46022681-46023000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
6-341
               

               
Cow position:
               
chrX:48262499-48262830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
21, 96
               

               
Conread position:
               
6-343
               

               
Cow position:
               
chrX:36283242-36283567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
29, 113
               

               
Conread position:
               
6-344
               

               
Cow position:
               
chrX:47186428-47186098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
20, 69
               

               
Conread position:
               
6-351
               

               
Cow position:
               
chrX:13923764-13924098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 81
               

               
Conread position:
               
6-355
               

               
Cow position:
               
chrX:21593180-21593532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 103
               

               
Conread position:
               
6-362
               

               
Cow position:
               
chrX:8869509-8869158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 17
               

               
Conread position:
               
6-362
               

               
Cow position:
               
chrX:31729336-31729682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
6-362
               

               
Cow position:
               
chrX:43049954-43050316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
17, 60
               

               
Conread position:
               
6-363
               

               
Cow position:
               
chrX:46546984-46546626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
27, 57
               

               
Conread position:
               
6-365
               

               
Cow position:
               
chrX:21642585-21642232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 43
               

               
Conread position:
               
6-365
               

               
Cow position:
               
chrX:40320298-40320655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
22, 81
               

               
Conread position:
               
6-366
               

               
Cow position:
               
chrX:4403207-4403570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 61
               

               
Conread position:
               
6-367
               

               
Cow position:
               
chrX:47609699-47610041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
22, 40
               

               
Conread position:
               
6-368
               

               
Cow position:
               
chrX:151795-152161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 85
               

               
Conread position:
               
6-368
               

               
Cow position:
               
chrX:8925594-8925932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
6-368
               

               
Cow position:
               
chrX:37955726-37956099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 60
               

               
Conread position:
               
6-369
               

               
Cow position:
               
chrX:30962981-30962622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 101
               

               
Conread position:
               
6-369
               

               
Cow position:
               
chrX:41790551-41790177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
99, 48
               

               
Conread position:
               
6-370
               

               
Cow position:
               
chrX:18111283-18111632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
22, 39
               

               
Conread position:
               
6-370
               

               
Cow position:
               
chrX:23563900-23563537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 96
               

               
Conread position:
               
6-373
               

               
Cow position:
               
chrX:35885837-35885476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 87
               

               
Conread position:
               
6-374
               

               
Cow position:
               
chrX:22921209-22921579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
22, 98
               

               
Conread position:
               
6-374
               

               
Cow position:
               
chrX:30133429-30133065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 96
               

               
Conread position:
               
6-375
               

               
Cow position:
               
chrX:21663205-21663559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
22, 40
               

               
Conread position:
               
6-376
               

               
Cow position:
               
chrX:11844354-11843976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
22, 56
               

               
Conread position:
               
6-376
               

               
Cow position:
               
chrX:16541781-16541392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
22, 168
               

               
Conread position:
               
6-376
               

               
Cow position:
               
chrX:34454557-34454919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
22, 58
               

               
Conread position:
               
6-376
               

               
Cow position:
               
chrX:38935178-38935540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
22, 40
               

               
Conread position:
               
6-376
               

               
Cow position:
               
chrX:46072927-46072573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
99, 249
               

               
Conread position:
               
7-243
               

               
Cow position:
               
chrX:18695029-18694803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
7-268
               

               
Cow position:
               
chrX:33639865-33640128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
18, 50
               

               
Conread position:
               
7-305
               

               
Cow position:
               
chrX:6690363-6690072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
24, 49
               

               
Conread position:
               
7-314
               

               
Cow position:
               
chrX:169646-169343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
22, 52
               

               
Conread position:
               
7-319
               

               
Cow position:
               
chrX:1055499-1055178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
16, 39
               

               
Conread position:
               
7-321
               

               
Cow position:
               
chrX:27946165-27945848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
21, 133
               

               
Conread position:
               
7-327
               

               
Cow position:
               
chrX:34502816-34503140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
250, 103
               

               
Conread position:
               
7-327
               

               
Cow position:
               
chrX:41068614-41068931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
21, 260
               

               
Conread position:
               
7-332
               

               
Cow position:
               
chrX:47344189-47344515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
20, 38
               

               
Conread position:
               
7-341
               

               
Cow position:
               
chrX:15485733-15485408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
21, 95
               

               
Conread position:
               
7-353
               

               
Cow position:
               
chrX:18204569-18204229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
25, 94
               

               
Conread position:
               
7-361
               

               
Cow position:
               
chrX:36061049-36061405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
26, 133
               

               
Conread position:
               
7-363
               

               
Cow position:
               
chrX:16996397-16996741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
21, 39
               

               
Conread position:
               
7-370
               

               
Cow position:
               
chrX:22812958-22813320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 73
               

               
Conread position:
               
7-372
               

               
Cow position:
               
chrX:34754294-34753922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
19, 60
               

               
Conread position:
               
7-373
               

               
Cow position:
               
chrX:21064177-21064543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
21, 39
               

               
Conread position:
               
8-167
               

               
Cow position:
               
chrX:40647881-40648038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
8-169
               

               
Cow position:
               
chrX:12018185-12018346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
18, 92
               

               
Conread position:
               
8-169
               

               
Cow position:
               
chrX:28845725-28845887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
21, 104
               

               
Conread position:
               
8-170
               

               
Cow position:
               
chrX:29488107-29487953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
136, 63
               

               
Conread position:
               
8-238
               

               
Cow position:
               
chrX:48571100-48570866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
20, 168
               

               
Conread position:
               
8-253
               

               
Cow position:
               
chrX:30543392-30543146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
116, 15
               

               
Conread position:
               
8-312
               

               
Cow position:
               
chrX:27301765-27302073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
16, 93
               

               
Conread position:
               
8-343
               

               
Cow position:
               
chrX:34376842-34377166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
8-343
               

               
Cow position:
               
chrX:46032827-46032501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
19, 100
               

               
Conread position:
               
8-343
               

               
Cow position:
               
chrX:47280037-47279709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
113, 126
               

               
Conread position:
               
8-354
               

               
Cow position:
               
chrX:30922078-30922405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
20, 94
               

               
Conread position:
               
8-357
               

               
Cow position:
               
chrX:26492901-26493247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 102
               

               
Conread position:
               
8-357
               

               
Cow position:
               
chrX:28632588-28632239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
194, 98
               

               
Conread position:
               
8-362
               

               
Cow position:
               
chrX:31949041-31948688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 54
               

               
Conread position:
               
8-365
               

               
Cow position:
               
chrX:4512129-4512494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
16, 252
               

               
Conread position:
               
8-365
               

               
Cow position:
               
chrX:18485693-18486054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
16, 36
               

               
Conread position:
               
9-254
               

               
Cow position:
               
chrX:11073294-11073052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
16, 35
               

               
Conread position:
               
9-324
               

               
Cow position:
               
chrX:45448795-45449118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
15, 68
               

               
Conread position:
               
9-325
               

               
Cow position:
               
chrX:29937983-29938300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
19, 44
               

               
Conread position:
               
9-325
               

               
Cow position:
               
chrX:31515065-31515380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
85, 65
               

               
Conread position:
               
9-325
               

               
Cow position:
               
chrX:36975845-36976161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 63
               

               
Conread position:
               
9-356
               

               
Cow position:
               
chrX:48044618-48044278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
19, 103
               

               
Conread position:
               
9-361
               

               
Cow position:
               
chrX:12290622-12290962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 54
               

               
Conread position:
               
9-362
               

               
Cow position:
               
chrX:17794879-17795225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
91, 57
               

               
Conread position:
               
9-366
               

               
Cow position:
               
chrX:40826858-40826500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
19, 94
               

               
Conread position:
               
9-370
               

               
Cow position:
               
chrX:41674005-41674358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
20, 98
               

               
Conread position:
               
9-373
               

               
Cow position:
               
chrX:7178797-7179139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
19, 35
               

               
Conread position:
               
9-373
               

               
Cow position:
               
chrX:34411738-34412105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
9-374
               

               
Cow position:
               
chrX:33000799-33001155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
225, 250
               

               
Conread position:
               
10-341
               

               
Cow position:
               
chrX:48010495-48010830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
10-343
               

               
Cow position:
               
chrX:24365930-24365595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 204
               

               
Conread position:
               
10-371
               

               
Cow position:
               
chrX:22283730-22284096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 19
               

               
Conread position:
               
11-278
               

               
Cow position:
               
chrX:16348672-16348408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
14, 153
               

               
Conread position:
               
11-343
               

               
Cow position:
               
chrX:34313927-34314248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
11-343
               

               
Cow position:
               
chrX:47248886-47248570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
151, 64
               

               
Conread position:
               
11-351
               

               
Cow position:
               
chrX:32330056-32330406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
17, 35
               

               
Conread position:
               
11-371
               

               
Cow position:
               
chrX:46291036-46291399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
137, 77
               

               
Conread position:
               
11-375
               

               
Cow position:
               
chrX:40336798-40337177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
57, 9
               

               
Conread position:
               
13-238
               

               
Cow position:
               
chrX:44090672-44090900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
15, 63
               

               
Conread position:
               
13-360
               

               
Cow position:
               
chrX:15231758-15231416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
11, 54
               

               
Conread position:
               
14-306
               

               
Cow position:
               
chrX:45968061-45968336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
14-341
               

               
Cow position:
               
chrX:10516157-10516479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 45
               

               
Conread position:
               
14-364
               

               
Cow position:
               
chrX:45110557-45110898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
159, 104
               

               
Conread position:
               
15-316
               

               
Cow position:
               
chrX:40283027-40283323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
9, 95
               

               
Conread position:
               
15-364
               

               
Cow position:
               
chrX:45050209-45050540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
16-343
               

               
Cow position:
               
chrX:42855358-42855690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 59
               

               
Conread position:
               
17-370
               

               
Cow position:
               
chrX:10859393-10859055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
138, 6
               

               
Conread position:
               
17-370
               

               
Cow position:
               
chrX:34837150-34836819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
17-371
               

               
Cow position:
               
chrX:24170830-24170470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
17, 55
               

               
Conread position:
               
17-376
               

               
Cow position:
               
chrX:12095870-12095512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 81
               

               
Conread position:
               
18-318
               

               
Cow position:
               
chrX:34222619-34222915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
185, 0
               

               
Conread position:
               
19-343
               

               
Cow position:
               
chrX:4153129-4152817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
94, 157
               

               
Conread position:
               
20-232
               

               
Cow position:
               
chrX:46793975-46793773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
20-278
               

               
Cow position:
               
chrX:41271091-41270823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
20-343
               

               
Cow position:
               
chrX:38560464-38560777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
42, 73
               

               
Conread position:
               
21-180
               

               
Cow position:
               
chrX:41199016-41199173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
120, 10
               

               
Conread position:
               
21-268
               

               
Cow position:
               
chrX:45884067-45883818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
60, 48
               

               
Conread position:
               
21-278
               

               
Cow position:
               
chrX:37129176-37129432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
5, 35
               

               
Conread position:
               
21-297
               

               
Cow position:
               
chrX:33205056-33204787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
21-353
               

               
Cow position:
               
chrX:21327814-21328151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
21-354
               

               
Cow position:
               
chrX:46532593-46532251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
21-376
               

               
Cow position:
               
chrX:20887732-20887389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 39
               

               
Conread position:
               
23-139
               

               
Cow position:
               
chrX:25283104-25282991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
23-155
               

               
Cow position:
               
chrX:12115956-12116087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
23-204
               

               
Cow position:
               
chrX:1572227-1572050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
23-258
               

               
Cow position:
               
chrX:28134255-28134481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
45, 84
               

               
Conread position:
               
23-260
               

               
Cow position:
               
chrX:46433401-46433636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
54, 87
               

               
Conread position:
               
23-267
               

               
Cow position:
               
chrX:29549637-29549400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
23-284
               

               
Cow position:
               
chrX:5900380-5900630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
23-289
               

               
Cow position:
               
chrX:42873304-42873562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
187, 64
               

               
Conread position:
               
23-306
               

               
Cow position:
               
chrX:47046596-47046323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
23-314
               

               
Cow position:
               
chrX:918817-918528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
104, 177
               

               
Conread position:
               
23-341
               

               
Cow position:
               
chrX:33654931-33654618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
40, 79
               

               
Conread position:
               
23-343
               

               
Cow position:
               
chrX:31250297-31250617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 77
               

               
Conread position:
               
23-353
               

               
Cow position:
               
chrX:7648491-7648176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
148, 76
               

               
Conread position:
               
23-354
               

               
Cow position:
               
chrX:161323-161639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
319, 64
               

               
Conread position:
               
23-354
               

               
Cow position:
               
chrX:20168468-20168793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
23-357
               

               
Cow position:
               
chrX:25035469-25035141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 76
               

               
Conread position:
               
23-358
               

               
Cow position:
               
chrX:1466071-1466407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
282, 94
               

               
Conread position:
               
23-359
               

               
Cow position:
               
chrX:10829343-10829679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
222, 83
               

               
Conread position:
               
23-359
               

               
Cow position:
               
chrX:29050157-29050484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 154
               

               
Conread position:
               
23-360
               

               
Cow position:
               
chrX:27442645-27442295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
77, 84
               

               
Conread position:
               
23-366
               

               
Cow position:
               
chrX:4269151-4268820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
147, 72
               

               
Conread position:
               
23-369
               

               
Cow position:
               
chrX:44192533-44192190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 38
               

               
Conread position:
               
24-278
               

               
Cow position:
               
chrX:36067924-36068184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
223, 0
               

               
Conread position:
               
24-325
               

               
Cow position:
               
chrX:13868615-13868913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
215, 8
               

               
Conread position:
               
24-367
               

               
Cow position:
               
chrX:48071072-48071413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
241, 75
               

               
Conread position:
               
24-369
               

               
Cow position:
               
chrX:14955853-14955521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
153, 63
               

               
Conread position:
               
24-376
               

               
Cow position:
               
chrX:31489431-31489782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 63
               

               
Conread position:
               
25-238
               

               
Cow position:
               
chrX:48652808-48652599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
25-253
               

               
Cow position:
               
chrX:47054615-47054387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
80, 138
               

               
Conread position:
               
25-325
               

               
Cow position:
               
chrX:27514788-27515068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
25-343
               

               
Cow position:
               
chrX:9252250-9251936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 84
               

               
Conread position:
               
25-353
               

               
Cow position:
               
chrX:40680523-40680853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
25-359
               

               
Cow position:
               
chrX:27261100-27261432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 33
               

               
Conread position:
               
25-364
               

               
Cow position:
               
chrX:20882025-20881711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
325, 49
               

               
Conread position:
               
25-370
               

               
Cow position:
               
chrX:17231646-17231991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 29
               

               
Conread position:
               
26-268
               

               
Cow position:
               
chrX:36514981-36514740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
156, 84
               

               
Conread position:
               
26-342
               

               
Cow position:
               
chrX:6559532-6559230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
27-268
               

               
Cow position:
               
chrX:23562549-23562785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
27-325
               

               
Cow position:
               
chrX:4296905-4296615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
118, 71
               

               
Conread position:
               
27-368
               

               
Cow position:
               
chrX:33800237-33800577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
20, 11
               

               
Conread position:
               
27-372
               

               
Cow position:
               
chrX:47873422-47873075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
213, 73
               

               
Conread position:
               
27-374
               

               
Cow position:
               
chrX:35590843-35590500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
92, 71
               

               
Conread position:
               
28-364
               

               
Cow position:
               
chrX:41238436-41238112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
314, 41
               

               
Conread position:
               
29-257
               

               
Cow position:
               
chrX:17966255-17966483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
32, 85
               

               
Conread position:
               
29-343
               

               
Cow position:
               
chrX:22115402-22115087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
6, 73
               

               
Conread position:
               
29-366
               

               
Cow position:
               
chrX:25815990-25815650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
30-297
               

               
Cow position:
               
chrX:16575040-16575294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
30-376
               

               
Cow position:
               
chrX:8492998-8493328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
312, 13
               

               
Conread position:
               
32-271
               

               
Cow position:
               
chrX:41192627-41192860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
84, 41
               

               
Conread position:
               
32-276
               

               
Cow position:
               
chrX:11318048-11317807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
159, 73
               

               
Conread position:
               
32-278
               

               
Cow position:
               
chrX:5135606-5135357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
176, 217
               

               
Conread position:
               
32-371
               

               
Cow position:
               
chrX:47345253-47345580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
112, 68
               

               
Conread position:
               
33-355
               

               
Cow position:
               
chrX:39220000-39220327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
221, 35
               

               
Conread position:
               
34-292
               

               
Cow position:
               
chrX:23113199-23113459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
75, 29
               

               
Conread position:
               
34-324
               

               
Cow position:
               
chrX:46771038-46770754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
191, 53
               

               
Conread position:
               
34-343
               

               
Cow position:
               
chrX:36866092-36866400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 64
               

               
Conread position:
               
34-363
               

               
Cow position:
               
chrX:43150343-43150678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
82, 29
               

               
Conread position:
               
34-366
               

               
Cow position:
               
chrX:5134394-5134724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
26, 16
               

               
Conread position:
               
35-307
               

               
Cow position:
               
chrX:4515606-4515879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
127, 75
               

               
Conread position:
               
36-262
               

               
Cow position:
               
chrX:3130498-3130718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
36-353
               

               
Cow position:
               
chrX:24633603-24633928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
51, 31
               

               
Conread position:
               
39-282
               

               
Cow position:
               
chrX:38208617-38208378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
117, 56
               

               
Conread position:
               
40-340
               

               
Cow position:
               
chrX:1088209-1087924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
73, 34
               

               
Conread position:
               
40-341
               

               
Cow position:
               
chrX:48003774-48004071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
43-279
               

               
Cow position:
               
chrX:32978144-32977922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
43-374
               

               
Cow position:
               
chrX:27511357-27511679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
44, 65
               

               
Conread position:
               
45-169
               

               
Cow position:
               
chrX:17301377-17301252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
45-369
               

               
Cow position:
               
chrX:27459788-27460122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
99, 55
               

               
Conread position:
               
46-321
               

               
Cow position:
               
chrX:19965469-19965190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
47-232
               

               
Cow position:
               
chrX:44954280-44954465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
30, 65
               

               
Conread position:
               
47-246
               

               
Cow position:
               
chrX:12082391-12082193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
57, 48
               

               
Conread position:
               
47-268
               

               
Cow position:
               
chrX:15820531-15820749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
210, 59
               

               
Conread position:
               
47-358
               

               
Cow position:
               
chrX:38321453-38321139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
66, 52
               

               
Conread position:
               
47-364
               

               
Cow position:
               
chrX:5063187-5063484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
48-323
               

               
Cow position:
               
chrX:44703137-44702858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
138, 69
               

               
Conread position:
               
48-348
               

               
Cow position:
               
chrX:48558683-48558978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
123, 9
               

               
Conread position:
               
50-343
               

               
Cow position:
               
chrX:25036924-25037219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
214, 66
               

               
Conread position:
               
50-353
               

               
Cow position:
               
chrX:13146918-13147221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
274, 49
               

               
Conread position:
               
50-363
               

               
Cow position:
               
chrX:296332-296639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
58, 97
               

               
Conread position:
               
50-375
               

               
Cow position:
               
chrX:2675020-2674694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
70, 45
               

               
Conread position:
               
51-343
               

               
Cow position:
               
chrX:4109128-4109412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
51-357
               

               
Cow position:
               
chrX:13121868-13122188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
51-367
               

               
Cow position:
               
chrX:20957186-20957494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
283, 60
               

               
Conread position:
               
52-352
               

               
Cow position:
               
chrX:27380292-27380596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
24, 47
               

               
Conread position:
               
53-255
               

               
Cow position:
               
chrX:46429881-46429679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
54, 10
               

               
Conread position:
               
54-324
               

               
Cow position:
               
chrX:4279176-4278911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
249, 50
               

               
Conread position:
               
55-259
               

               
Cow position:
               
chrX:22915094-22914898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
55-326
               

               
Cow position:
               
chrX:1360028-1360292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
99, 44
               

               
Conread position:
               
56-258
               

               
Cow position:
               
chrX:31627038-31626835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
50, 121
               

               
Conread position:
               
56-323
               

               
Cow position:
               
chrX:19469563-19469308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
56-325
               

               
Cow position:
               
chrX:40108573-40108304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
77, 32
               

               
Conread position:
               
57-268
               

               
Cow position:
               
chrX:32623511-32623723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
48, 182
               

               
Conread position:
               
58-292
               

               
Cow position:
               
chrX:6541791-6541549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
87, 52
               

               
Conread position:
               
58-351
               

               
Cow position:
               
chrX:44339379-44339086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 117
               

               
Conread position:
               
60-324
               

               
Cow position:
               
chrX:9360835-9361092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
39, 33
               

               
Conread position:
               
61-373
               

               
Cow position:
               
chrX:35985766-35986069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
52, 39
               

               
Conread position:
               
63-370
               

               
Cow position:
               
chrX:11825690-11825389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
53, 32
               

               
Conread position:
               
66-259
               

               
Cow position:
               
chrX:19943284-19943092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
45, 129
               

               
Conread position:
               
66-340
               

               
Cow position:
               
chrX:22393033-22392764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
171, 0
               

               
Conread position:
               
66-373
               

               
Cow position:
               
chrX:36367989-36367678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
95, 55
               

               
Conread position:
               
67-341
               

               
Cow position:
               
chrX:24457599-24457322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
54, 33
               

               
Conread position:
               
67-351
               

               
Cow position:
               
chrX:36392234-36391952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
94, 30
               

               
Conread position:
               
68-263
               

               
Cow position:
               
chrX:31373500-31373684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
68-325
               

               
Cow position:
               
chrX:4645957-4645705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
68-374
               

               
Cow position:
               
chrX:27306407-27306699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
273, 189
               

               
Conread position:
               
69-315
               

               
Cow position:
               
chrX:20678197-20677948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
37, 102
               

               
Conread position:
               
69-370
               

               
Cow position:
               
chrX:34540635-34540937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
42, 31
               

               
Conread position:
               
69-373
               

               
Cow position:
               
chrX:47013446-47013142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
221, 13
               

               
Conread position:
               
71-256
               

               
Cow position:
               
chrX:29553243-29553426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
73-340
               

               
Cow position:
               
chrX:27075090-27074827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
12, 33
               

               
Conread position:
               
75-347
               

               
Cow position:
               
chrX:35431282-35431010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
92, 31
               

               
Conread position:
               
76-306
               

               
Cow position:
               
chrX:18964862-18964635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
183, 83
               

               
Conread position:
               
76-353
               

               
Cow position:
               
chrX:11326137-11325868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
50, 145
               

               
Conread position:
               
76-353
               

               
Cow position:
               
chrX:19394515-19394793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
161, 41
               

               
Conread position:
               
76-359
               

               
Cow position:
               
chrX:24749050-24749326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
177, 31
               

               
Conread position:
               
76-369
               

               
Cow position:
               
chrX:42893880-42894172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
36, 191
               

               
Conread position:
               
76-370
               

               
Cow position:
               
chrX:6599821-6599520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
39, 30
               

               
Conread position:
               
77-312
               

               
Cow position:
               
chrX:23188813-23188593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
69, 34
               

               
Conread position:
               
77-363
               

               
Cow position:
               
chrX:28940210-28940491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
25, 12
               

               
Conread position:
               
78-324
               

               
Cow position:
               
chrX:45543282-45543543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
13, 26
               

               
Conread position:
               
78-372
               

               
Cow position:
               
chrX:32605112-32604809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
38, 159
               

               
Conread position:
               
78-374
               

               
Cow position:
               
chrX:17956660-17956948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
263, 32
               

               
Conread position:
               
79-263
               

               
Cow position:
               
chrX:43116690-43116873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
100, 27
               

               
Conread position:
               
79-318
               

               
Cow position:
               
chrX:44660622-44660386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
155, 16
               

               
Conread position:
               
79-321
               

               
Cow position:
               
chrX:44090888-44091128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
79-325
               

               
Cow position:
               
chrX:12219118-12219355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
79-325
               

               
Cow position:
               
chrX:42432546-42432305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
93, 27
               

               
Conread position:
               
79-334
               

               
Cow position:
               
chrX:47358273-47358532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
69, 20
               

               
Conread position:
               
79-338
               

               
Cow position:
               
chrX:44796348-44796607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
132, 21
               

               
Conread position:
               
79-339
               

               
Cow position:
               
chrX:45391748-45391490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
79-339
               

               
Cow position:
               
chrX:48397862-48397603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
219, 21
               

               
Conread position:
               
79-341
               

               
Cow position:
               
chrX:48532280-48532539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
43, 21
               

               
Conread position:
               
79-341
               

               
Cow position:
               
chrX:48574612-48574872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
186, 21
               

               
Conread position:
               
79-352
               

               
Cow position:
               
chrX:44859897-44859626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
79-352
               

               
Cow position:
               
chrX:45254617-45254346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
79-361
               

               
Cow position:
               
chrX:40532078-40531780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
180, 27
               

               
Conread position:
               
79-362
               

               
Cow position:
               
chrX:44591096-44590814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
263, 21
               

               
Conread position:
               
79-362
               

               
Cow position:
               
chrX:46722624-46722342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
264, 21
               

               
Conread position:
               
79-364
               

               
Cow position:
               
chrX:45488884-45489170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
172, 21
               

               
Conread position:
               
79-365
               

               
Cow position:
               
chrX:4289405-4289687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
35, 172
               

               
Conread position:
               
79-365
               

               
Cow position:
               
chrX:48198681-48198399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
79-370
               

               
Cow position:
               
chrX:44202081-44201790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
264, 27
               

               
Conread position:
               
79-370
               

               
Cow position:
               
chrX:44238799-44238504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
185, 21
               

               
Conread position:
               
79-370
               

               
Cow position:
               
chrX:45447221-45447512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
172, 21
               

               
Conread position:
               
79-371
               

               
Cow position:
               
chrX:44954458-44954748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
79-372
               

               
Cow position:
               
chrX:48473873-48474161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
185, 21
               

               
Conread position:
               
79-373
               

               
Cow position:
               
chrX:44736890-44736598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
256, 21
               

               
Conread position:
               
79-374
               

               
Cow position:
               
chrX:44834686-44834396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
225, 21
               

               
Conread position:
               
79-374
               

               
Cow position:
               
chrX:45005409-45005117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
79-374
               

               
Cow position:
               
chrX:46793780-46793493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
79-376
               

               
Cow position:
               
chrX:44837230-44837528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
249, 21
               

               
Conread position:
               
79-376
               

               
Cow position:
               
chrX:48194925-48194632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
80-353
               

               
Cow position:
               
chrX:38642216-38642477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
81-358
               

               
Cow position:
               
chrX:41941594-41941866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
261, 24
               

               
Conread position:
               
82-256
               

               
Cow position:
               
chrX:10305379-10305210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
82-259
               

               
Cow position:
               
chrX:23498709-23498536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
83-321
               

               
Cow position:
               
chrX:1397596-1397830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
168, 17
               

               
Conread position:
               
83-371
               

               
Cow position:
               
chrX:43152187-43151896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
236, 23
               

               
Conread position:
               
85-371
               

               
Cow position:
               
chrX:48570872-48570588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
88-278
               

               
Cow position:
               
chrX:20743577-20743766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
170, 0
               

               
Conread position:
               
88-310
               

               
Cow position:
               
chrX:32318278-32318495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
82, 180
               

               
Conread position:
               
88-365
               

               
Cow position:
               
chrX:45403571-45403296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
92-350
               

               
Cow position:
               
chrX:25411886-25412153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
173, 19
               

               
Conread position:
               
93-351
               

               
Cow position:
               
chrX:42836164-42836416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
94-324
               

               
Cow position:
               
chrX:32574293-32574524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
8, 191
               

               
Conread position:
               
96-344
               

               
Cow position:
               
chrX:32910085-32910325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
96-375
               

               
Cow position:
               
chrX:42450033-42449754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
97-363
               

               
Cow position:
               
chrX:11763022-11762762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
25, 157
               

               
Conread position:
               
97-363
               

               
Cow position:
               
chrX:35275969-35276233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
97-372
               

               
Cow position:
               
chrX:47255430-47255705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
168, 179
               

               
Conread position:
               
100-375
               

               
Cow position:
               
chrX:43008593-43008869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
102-369
               

               
Cow position:
               
chrX:16836299-16836041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
103-317
               

               
Cow position:
               
chrX:11859548-11859335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
149, 14
               

               
Conread position:
               
104-367
               

               
Cow position:
               
chrX:40574953-40574692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
106-373
               

               
Cow position:
               
chrX:26979799-26979534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
13, 93
               

               
Conread position:
               
107-376
               

               
Cow position:
               
chrX:1552961-1553229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
240, 0
               

               
Conread position:
               
109-358
               

               
Cow position:
               
chrX:17292948-17293202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
110-343
               

               
Cow position:
               
chrX:38587848-38587618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
111-306
               

               
Cow position:
               
chrX:29733596-29733392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
111-326
               

               
Cow position:
               
chrX:6007671-6007885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
111-343
               

               
Cow position:
               
chrX:3806678-3806906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
230, 146
               

               
Conread position:
               
111-343
               

               
Cow position:
               
chrX:37072384-37072613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
22, 161
               

               
Conread position:
               
111-368
               

               
Cow position:
               
chrX:26843274-26843012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
111-374
               

               
Cow position:
               
chrX:30672400-30672128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
35, 26
               

               
Conread position:
               
111-376
               

               
Cow position:
               
chrX:25846077-25845809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
230, 130
               

               
Conread position:
               
112-327
               

               
Cow position:
               
chrX:35620700-35620916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
112-341
               

               
Cow position:
               
chrX:29478721-29478947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
70, 58
               

               
Conread position:
               
112-343
               

               
Cow position:
               
chrX:32208825-32208600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
112-356
               

               
Cow position:
               
chrX:39290356-39290599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
198, 132
               

               
Conread position:
               
112-360
               

               
Cow position:
               
chrX:23335975-23335732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
112-361
               

               
Cow position:
               
chrX:27145601-27145844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
155, 0
               

               
Conread position:
               
112-372
               

               
Cow position:
               
chrX:26205451-26205204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
113-364
               

               
Cow position:
               
chrX:16984639-16984882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
113-364
               

               
Cow position:
               
chrX:42479831-42480075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
198, 139
               

               
Conread position:
               
113-372
               

               
Cow position:
               
chrX:31829463-31829205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
176, 170
               

               
Conread position:
               
113-372
               

               
Cow position:
               
chrX:36109618-36109358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
155, 0
               

               
Conread position:
               
114-325
               

               
Cow position:
               
chrX:34420733-34420945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
161, 0
               

               
Conread position:
               
114-340
               

               
Cow position:
               
chrX:37856351-37856585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
114-362
               

               
Cow position:
               
chrX:45139933-45139684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
228, 0
               

               
Conread position:
               
114-370
               

               
Cow position:
               
chrX:47079626-47079882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
167, 147
               

               
Conread position:
               
115-260
               

               
Cow position:
               
chrX:29501881-29501739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
115-367
               

               
Cow position:
               
chrX:35658800-35659048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
227, 22
               

               
Conread position:
               
115-369
               

               
Cow position:
               
chrX:27668958-27668708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
227, 155
               

               
Conread position:
               
116-342
               

               
Cow position:
               
chrX:2935958-2936179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
116-365
               

               
Cow position:
               
chrX:4328182-4327930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
206, 124
               

               
Conread position:
               
116-367
               

               
Cow position:
               
chrX:12972682-12972930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
27, 60
               

               
Conread position:
               
117-343
               

               
Cow position:
               
chrX:10252196-10251975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
46, 56
               

               
Conread position:
               
118-343
               

               
Cow position:
               
chrX:17524381-17524156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
28, 19
               

               
Conread position:
               
118-368
               

               
Cow position:
               
chrX:25049279-25049029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
118-369
               

               
Cow position:
               
chrX:24336074-24335822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
225, 0
               

               
Conread position:
               
118-371
               

               
Cow position:
               
chrX:38967891-38968150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
29, 76
               

               
Conread position:
               
118-375
               

               
Cow position:
               
chrX:39180230-39179972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
199, 100
               

               
Conread position:
               
119-371
               

               
Cow position:
               
chrX:32943072-32942828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
191, 0
               

               
Conread position:
               
120-340
               

               
Cow position:
               
chrX:1122538-1122323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
123-366
               

               
Cow position:
               
chrX:30958733-30958980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
21, 52
               

               
Conread position:
               
125-343
               

               
Cow position:
               
chrX:16324004-16323788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
130, 46
               

               
Conread position:
               
126-341
               

               
Cow position:
               
chrX:35392283-35392080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
127-325
               

               
Cow position:
               
chrX:29467766-29467573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
128-271
               

               
Cow position:
               
chrX:36313993-36313850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
129-267
               

               
Cow position:
               
chrX:47342130-47342267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
129-340
               

               
Cow position:
               
chrX:38301823-38302038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
37, 45
               

               
Conread position:
               
130-324
               

               
Cow position:
               
chrX:41810153-41809967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
132-341
               

               
Cow position:
               
chrX:19761771-19761974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
132-343
               

               
Cow position:
               
chrX:20583683-20583887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
132-354
               

               
Cow position:
               
chrX:31479988-31480204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
113, 59
               

               
Conread position:
               
132-371
               

               
Cow position:
               
chrX:20345470-20345706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
133-366
               

               
Cow position:
               
chrX:1719133-1719353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
134-343
               

               
Cow position:
               
chrX:32877356-32877152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
134-366
               

               
Cow position:
               
chrX:19717540-19717762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
209, 40
               

               
Conread position:
               
134-371
               

               
Cow position:
               
chrX:27667444-27667684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
161, 140
               

               
Conread position:
               
135-358
               

               
Cow position:
               
chrX:42539578-42539786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
21, 88
               

               
Conread position:
               
137-343
               

               
Cow position:
               
chrX:34398762-34398556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
137-373
               

               
Cow position:
               
chrX:28067872-28068108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
138-326
               

               
Cow position:
               
chrX:19795478-19795299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
58, 11
               

               
Conread position:
               
139-343
               

               
Cow position:
               
chrX:41453326-41453526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
35, 31
               

               
Conread position:
               
141-365
               

               
Cow position:
               
chrX:8642072-8642295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
201, 63
               

               
Conread position:
               
144-335
               

               
Cow position:
               
chrX:36922113-36921922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
99, 148
               

               
Conread position:
               
145-339
               

               
Cow position:
               
chrX:15100016-15100201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
99, 10
               

               
Conread position:
               
145-343
               

               
Cow position:
               
chrX:19018801-19018601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
145-343
               

               
Cow position:
               
chrX:37749953-37749767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
26, 37
               

               
Conread position:
               
145-363
               

               
Cow position:
               
chrX:4091954-4092170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
34, 26
               

               
Conread position:
               
145-366
               

               
Cow position:
               
chrX:44040211-44040427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
145-369
               

               
Cow position:
               
chrX:46909845-46910060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
25, 34
               

               
Conread position:
               
145-370
               

               
Cow position:
               
chrX:32191143-32190917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
198, 0
               

               
Conread position:
               
145-374
               

               
Cow position:
               
chrX:44995528-44995760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
31, 26
               

               
Conread position:
               
145-375
               

               
Cow position:
               
chrX:35285203-35285435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
198, 0
               

               
Conread position:
               
145-376
               

               
Cow position:
               
chrX:2314589-2314355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
198, 0
               

               
Conread position:
               
146-363
               

               
Cow position:
               
chrX:18439027-18439244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
147-343
               

               
Cow position:
               
chrX:23359079-23358890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
147-343
               

               
Cow position:
               
chrX:48822310-48822115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
147-361
               

               
Cow position:
               
chrX:5026288-5026496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
162, 108
               

               
Conread position:
               
147-368
               

               
Cow position:
               
chrX:32866907-32867120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
186, 120
               

               
Conread position:
               
147-371
               

               
Cow position:
               
chrX:8326936-8327157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
195, 0
               

               
Conread position:
               
150-341
               

               
Cow position:
               
chrX:1960390-1960200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
150-360
               

               
Cow position:
               
chrX:11454221-11454418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
136, 58
               

               
Conread position:
               
150-363
               

               
Cow position:
               
chrX:35681603-35681816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
191, 6
               

               
Conread position:
               
150-364
               

               
Cow position:
               
chrX:27270410-27270618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
62, 120
               

               
Conread position:
               
150-374
               

               
Cow position:
               
chrX:17498357-17498580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
195, 0
               

               
Conread position:
               
151-361
               

               
Cow position:
               
chrX:33020473-33020684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
192, 0
               

               
Conread position:
               
151-365
               

               
Cow position:
               
chrX:3605916-3606130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
152-325
               

               
Cow position:
               
chrX:31986537-31986363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
46, 101
               

               
Conread position:
               
152-343
               

               
Cow position:
               
chrX:16556180-16555996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
153-325
               

               
Cow position:
               
chrX:44123293-44123458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
153-354
               

               
Cow position:
               
chrX:37752068-37751873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
162-362
               

               
Cow position:
               
chrX:4750285-4750093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
166-343
               

               
Cow position:
               
chrX:23471815-23471641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
83, 104
               

               
Conread position:
               
166-359
               

               
Cow position:
               
chrX:34991415-34991606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
185, 101
               

               
Conread position:
               
167-365
               

               
Cow position:
               
chrX:31250843-31250645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
167-374
               

               
Cow position:
               
chrX:1121315-1121108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
168-366
               

               
Cow position:
               
chrX:11529395-11529588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
9, 103
               

               
Conread position:
               
168-376
               

               
Cow position:
               
chrX:47855034-47855238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
185, 40
               

               
Conread position:
               
173-343
               

               
Cow position:
               
chrX:6480538-6480368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
173-366
               

               
Cow position:
               
chrX:37867490-37867682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
169, 0
               

               
Conread position:
               
173-374
               

               
Cow position:
               
chrX:39555620-39555420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
149, 37
               

               
Conread position:
               
176-352
               

               
Cow position:
               
chrX:42461557-42461391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
176-364
               

               
Cow position:
               
chrX:8759687-8759871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
57, 25
               

               
Conread position:
               
176-364
               

               
Cow position:
               
chrX:37867314-37867500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
173, 0
               

               
Conread position:
               
177-326
               

               
Cow position:
               
chrX:10237851-10237703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
177-335
               

               
Cow position:
               
chrX:46533243-46533085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
177-338
               

               
Cow position:
               
chrX:27415518-27415366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
177-340
               

               
Cow position:
               
chrX:11653832-11653991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
177-341
               

               
Cow position:
               
chrX:31983523-31983353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
177-342
               

               
Cow position:
               
chrX:41858820-41858658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
62, 93
               

               
Conread position:
               
177-343
               

               
Cow position:
               
chrX:23497629-23497470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
177-343
               

               
Cow position:
               
chrX:29682049-29681891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
177-348
               

               
Cow position:
               
chrX:22552917-22552747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
177-352
               

               
Cow position:
               
chrX:5915250-5915429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
177-353
               

               
Cow position:
               
chrX:11589305-11589130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
177-353
               

               
Cow position:
               
chrX:17525805-17525641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
177-357
               

               
Cow position:
               
chrX:11602421-11602246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
177-362
               

               
Cow position:
               
chrX:42875274-42875453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
177-364
               

               
Cow position:
               
chrX:3032981-3032794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
138, 169
               

               
Conread position:
               
177-364
               

               
Cow position:
               
chrX:46068697-46068514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
166, 81
               

               
Conread position:
               
177-365
               

               
Cow position:
               
chrX:6389143-6389330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
165, 28
               

               
Conread position:
               
177-365
               

               
Cow position:
               
chrX:41199286-41199471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
31, 93
               

               
Conread position:
               
177-367
               

               
Cow position:
               
chrX:26882018-26881829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
168, 0
               

               
Conread position:
               
177-371
               

               
Cow position:
               
chrX:12812-12998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
177-376
               

               
Cow position:
               
chrX:18030355-18030156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
177-376
               

               
Cow position:
               
chrX:27202632-27202830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
165, 102
               

               
Conread position:
               
177-376
               

               
Cow position:
               
chrX:36468307-36468109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
155, 0
               

               
Conread position:
               
178-340
               

               
Cow position:
               
chrX:6640490-6640648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
178-341
               

               
Cow position:
               
chrX:13347336-13347494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
178-343
               

               
Cow position:
               
chrX:42086890-42087053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
178-343
               

               
Cow position:
               
chrX:42760315-42760480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
178-348
               

               
Cow position:
               
chrX:28106910-28107078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
178-351
               

               
Cow position:
               
chrX:40046515-40046327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
178-358
               

               
Cow position:
               
chrX:39642559-39642387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
178-359
               

               
Cow position:
               
chrX:5487876-5487706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
178-361
               

               
Cow position:
               
chrX:1101620-1101798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
164, 69
               

               
Conread position:
               
178-362
               

               
Cow position:
               
chrX:40556396-40556215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
50, 84
               

               
Conread position:
               
178-363
               

               
Cow position:
               
chrX:32215291-32215474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
167, 0
               

               
Conread position:
               
178-363
               

               
Cow position:
               
chrX:35409815-35410000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
176, 39
               

               
Conread position:
               
178-367
               

               
Cow position:
               
chrX:14925335-14925528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
165, 0
               

               
Conread position:
               
178-367
               

               
Cow position:
               
chrX:41010961-41011141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
178-368
               

               
Cow position:
               
chrX:1938077-1938267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
164, 80
               

               
Conread position:
               
178-371
               

               
Cow position:
               
chrX:34270624-34270816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
178-375
               

               
Cow position:
               
chrX:44225668-44225472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
157, 0
               

               
Conread position:
               
178-376
               

               
Cow position:
               
chrX:4169968-4169768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
129, 63
               

               
Conread position:
               
179-339
               

               
Cow position:
               
chrX:45759735-45759892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
119, 90
               

               
Conread position:
               
179-354
               

               
Cow position:
               
chrX:9451409-9451581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
92, 45
               

               
Conread position:
               
179-365
               

               
Cow position:
               
chrX:4559797-4559983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
180-354
               

               
Cow position:
               
chrX:12197133-12197307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
80, 134
               

               
Conread position:
               
180-374
               

               
Cow position:
               
chrX:14135743-14135932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
183-332
               

               
Cow position:
               
chrX:4366408-4366561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
24, 97
               

               
Conread position:
               
183-343
               

               
Cow position:
               
chrX:5097731-5097567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
16, 86
               

               
Conread position:
               
183-343
               

               
Cow position:
               
chrX:40648963-40649129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
183-348
               

               
Cow position:
               
chrX:28850791-28850950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
183-348
               

               
Cow position:
               
chrX:48574289-48574121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
183-351
               

               
Cow position:
               
chrX:45044520-45044689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
183-362
               

               
Cow position:
               
chrX:41215390-41215569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
183-366
               

               
Cow position:
               
chrX:41435481-41435292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
183-367
               

               
Cow position:
               
chrX:35840866-35841048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
159, 0
               

               
Conread position:
               
185-340
               

               
Cow position:
               
chrX:4486954-4486800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
186-324
               

               
Cow position:
               
chrX:11813144-11813282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
186-340
               

               
Cow position:
               
chrX:3494974-3494826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
186-343
               

               
Cow position:
               
chrX:4602867-4602711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
186-343
               

               
Cow position:
               
chrX:6634415-6634572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
186-343
               

               
Cow position:
               
chrX:16801192-16801040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
186-343
               

               
Cow position:
               
chrX:27416164-27416322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
76, 7
               

               
Conread position:
               
186-343
               

               
Cow position:
               
chrX:30789460-30789302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
186-343
               

               
Cow position:
               
chrX:38577716-38577871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
186-343
               

               
Cow position:
               
chrX:41166754-41166602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
186-343
               

               
Cow position:
               
chrX:41454883-41454726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
186-347
               

               
Cow position:
               
chrX:10278941-10279106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
67, 134
               

               
Conread position:
               
186-348
               

               
Cow position:
               
chrX:33678402-33678238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
186-352
               

               
Cow position:
               
chrX:29451480-29451309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
46, 95
               

               
Conread position:
               
186-359
               

               
Cow position:
               
chrX:16763854-16763686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
156, 81
               

               
Conread position:
               
186-363
               

               
Cow position:
               
chrX:38346992-38347169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
186-364
               

               
Cow position:
               
chrX:14951282-14951106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
58, 84
               

               
Conread position:
               
186-365
               

               
Cow position:
               
chrX:51830-51653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
186-372
               

               
Cow position:
               
chrX:10415182-10414994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
156, 0
               

               
Conread position:
               
186-372
               

               
Cow position:
               
chrX:19000197-19000382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
161, 0
               

               
Conread position:
               
186-375
               

               
Cow position:
               
chrX:47100526-47100337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
84, 65
               

               
Conread position:
               
187-343
               

               
Cow position:
               
chrX:24425930-24425774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
69, 57
               

               
Conread position:
               
187-343
               

               
Cow position:
               
chrX:45657868-45657708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
187-363
               

               
Cow position:
               
chrX:10154975-10154801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
75, 23
               

               
Conread position:
               
187-363
               

               
Cow position:
               
chrX:19203274-19203098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
187-363
               

               
Cow position:
               
chrX:34194009-34193832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
155, 0
               

               
Conread position:
               
187-364
               

               
Cow position:
               
chrX:16770136-16770313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
187-367
               

               
Cow position:
               
chrX:597402-597228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
188-343
               

               
Cow position:
               
chrX:31279851-31279700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
188-372
               

               
Cow position:
               
chrX:44941794-44941976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
75, 139
               

               
Conread position:
               
188-376
               

               
Cow position:
               
chrX:42216556-42216370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
155, 22
               

               
Conread position:
               
189-343
               

               
Cow position:
               
chrX:35029852-35029709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
190-325
               

               
Cow position:
               
chrX:25049026-25048893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
190-340
               

               
Cow position:
               
chrX:231943-231802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
190-343
               

               
Cow position:
               
chrX:3542931-3543092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
190-364
               

               
Cow position:
               
chrX:42506874-42506699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
67, 157
               

               
Conread position:
               
190-366
               

               
Cow position:
               
chrX:16412206-16412033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
67, 120
               

               
Conread position:
               
190-368
               

               
Cow position:
               
chrX:11674185-11674362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
59, 160
               

               
Conread position:
               
190-372
               

               
Cow position:
               
chrX:43059176-43059002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
38, 55
               

               
Conread position:
               
190-375
               

               
Cow position:
               
chrX:1571514-1571334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
153, 69
               

               
Conread position:
               
191-359
               

               
Cow position:
               
chrX:11670762-11670930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
191-362
               

               
Cow position:
               
chrX:11517904-11517729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
191-367
               

               
Cow position:
               
chrX:34108282-34108108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
192-343
               

               
Cow position:
               
chrX:17744700-17744848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
17, 70
               

               
Conread position:
               
192-363
               

               
Cow position:
               
chrX:26720605-26720441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
150, 75
               

               
Conread position:
               
193-340
               

               
Cow position:
               
chrX:28167057-28167203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
193-357
               

               
Cow position:
               
chrX:37717800-37717964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
152, 12
               

               
Conread position:
               
195-376
               

               
Cow position:
               
chrX:17929081-17929259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
158, 68
               

               
Conread position:
               
195-376
               

               
Cow position:
               
chrX:35509599-35509420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
196-353
               

               
Cow position:
               
chrX:37844076-37844237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
45, 145
               

               
Conread position:
               
196-353
               

               
Cow position:
               
chrX:42516049-42515893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
150, 0
               

               
Conread position:
               
196-368
               

               
Cow position:
               
chrX:42314811-42314641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
197-372
               

               
Cow position:
               
chrX:43028314-43028479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
199-367
               

               
Cow position:
               
chrX:40108259-40108093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
38, 64
               

               
Conread position:
               
200-341
               

               
Cow position:
               
chrX:19356548-19356689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
200-375
               

               
Cow position:
               
chrX:19511032-19510848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
51, 122
               

               
Conread position:
               
201-353
               

               
Cow position:
               
chrX:1996366-1996214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
204-355
               

               
Cow position:
               
chrX:39887125-39886970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
204-361
               

               
Cow position:
               
chrX:876758-876602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
207-363
               

               
Cow position:
               
chrX:10479841-10479998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
211-354
               

               
Cow position:
               
chrX:42159037-42159181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
212-362
               

               
Cow position:
               
chrX:41194002-41194153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
116, 21
               

               
Conread position:
               
215-374
               

               
Cow position:
               
chrX:783544-783702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
216-353
               

               
Cow position:
               
chrX:38727037-38726906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
126, 45
               

               
Conread position:
               
221-375
               

               
Cow position:
               
chrX:6855965-6856123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
230-353
               

               
Cow position:
               
chrX:19162016-19161892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
231-366
               

               
Cow position:
               
chrX:23185222-23185089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
231-368
               

               
Cow position:
               
chrX:38080263-38080400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.