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Cow genome map

           
Conread name:
           
rcmu37_n4.y1
        

               
Conread position:
               
1-108
               

               
Cow position:
               
chr5:61455586-61455698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
1-114
               

               
Cow position:
               
chr5:24837114-24837001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-119
               

               
Cow position:
               
chr5:45026086-45025967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
1-122
               

               
Cow position:
               
chr5:66280960-66280838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
1-125
               

               
Cow position:
               
chr5:66297070-66297194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
62, 42
               

               
Conread position:
               
1-126
               

               
Cow position:
               
chr5:14415604-14415736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
42, 13
               

               
Conread position:
               
1-126
               

               
Cow position:
               
chr5:50870373-50870503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
1-129
               

               
Cow position:
               
chr5:63917579-63917450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
1-132
               

               
Cow position:
               
chr5:54530814-54530947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
35, 93
               

               
Conread position:
               
1-138
               

               
Cow position:
               
chr5:57576045-57576185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
40, 17
               

               
Conread position:
               
1-140
               

               
Cow position:
               
chr5:37366729-37366872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
1-148
               

               
Cow position:
               
chr5:61875346-61875205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
44, 78
               

               
Conread position:
               
1-150
               

               
Cow position:
               
chr5:63388626-63388775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
42, 94
               

               
Conread position:
               
1-153
               

               
Cow position:
               
chr5:5848355-5848205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
40, 21
               

               
Conread position:
               
1-158
               

               
Cow position:
               
chr5:30816547-30816708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
42, 70
               

               
Conread position:
               
1-159
               

               
Cow position:
               
chr5:57271433-57271275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
22, 34
               

               
Conread position:
               
1-160
               

               
Cow position:
               
chr5:3492033-3492186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
77, 31
               

               
Conread position:
               
1-160
               

               
Cow position:
               
chr5:60519998-60520154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
152, 23
               

               
Conread position:
               
1-164
               

               
Cow position:
               
chr5:45036853-45037016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
82, 90
               

               
Conread position:
               
1-167
               

               
Cow position:
               
chr5:32963798-32963632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
51, 82
               

               
Conread position:
               
1-170
               

               
Cow position:
               
chr5:73252928-73253093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
1-171
               

               
Cow position:
               
chr5:35145184-35145350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
1-171
               

               
Cow position:
               
chr5:66281243-66281407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
103, 123
               

               
Conread position:
               
1-173
               

               
Cow position:
               
chr5:33537722-33537891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
112, 83
               

               
Conread position:
               
1-178
               

               
Cow position:
               
chr5:74019940-74019764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
83, 161
               

               
Conread position:
               
1-190
               

               
Cow position:
               
chr5:42747987-42748176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
46, 55
               

               
Conread position:
               
1-192
               

               
Cow position:
               
chr5:14420513-14420320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
42, 110
               

               
Conread position:
               
1-195
               

               
Cow position:
               
chr5:64844286-64844104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
80, 27
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chr5:41486906-41486713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
10, 34
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chr5:59298127-59297938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
41, 103
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chr5:72150083-72150275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-201
               

               
Cow position:
               
chr5:56135137-56134935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
77, 101
               

               
Conread position:
               
1-204
               

               
Cow position:
               
chr5:16184921-16185120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
1-204
               

               
Cow position:
               
chr5:30639021-30638831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
83, 21
               

               
Conread position:
               
1-206
               

               
Cow position:
               
chr5:19470355-19470156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
44, 114
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr5:49558999-49559216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
63, 144
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr5:17644824-17644616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
77, 167
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr5:51490923-51490725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
76, 30
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr5:62995676-62995886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
84, 59
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr5:71504957-71505171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
94, 106
               

               
Conread position:
               
1-216
               

               
Cow position:
               
chr5:42667557-42667343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
79, 12
               

               
Conread position:
               
1-218
               

               
Cow position:
               
chr5:7140273-7140060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
77, 41
               

               
Conread position:
               
1-219
               

               
Cow position:
               
chr5:41522964-41522755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
76, 101
               

               
Conread position:
               
1-224
               

               
Cow position:
               
chr5:3281040-3280820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
59, 42
               

               
Conread position:
               
1-224
               

               
Cow position:
               
chr5:75230515-75230726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
77, 23
               

               
Conread position:
               
1-225
               

               
Cow position:
               
chr5:12709717-12709942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
75, 163
               

               
Conread position:
               
1-225
               

               
Cow position:
               
chr5:51076812-51076591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
104, 81
               

               
Conread position:
               
1-226
               

               
Cow position:
               
chr5:1027860-1027640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
42, 12
               

               
Conread position:
               
1-229
               

               
Cow position:
               
chr5:35235877-35235652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
85, 102
               

               
Conread position:
               
1-231
               

               
Cow position:
               
chr5:58144772-58144544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
77, 163
               

               
Conread position:
               
1-233
               

               
Cow position:
               
chr5:1766512-1766288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
1-236
               

               
Cow position:
               
chr5:62826922-62826686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 161
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr5:28957785-28957548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
43, 140
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr5:29980154-29979916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
42, 103
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr5:65593711-65593938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
232, 36
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr5:2500357-2500112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
1-239
               

               
Cow position:
               
chr5:21964123-21964357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
83, 27
               

               
Conread position:
               
1-245
               

               
Cow position:
               
chr5:6670366-6670119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 119
               

               
Conread position:
               
1-247
               

               
Cow position:
               
chr5:20554918-20554678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
43, 107
               

               
Conread position:
               
1-247
               

               
Cow position:
               
chr5:35449085-35449312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
232, 104
               

               
Conread position:
               
1-247
               

               
Cow position:
               
chr5:54713905-54713656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
65, 171
               

               
Conread position:
               
1-249
               

               
Cow position:
               
chr5:13691743-13691489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
40, 154
               

               
Conread position:
               
1-249
               

               
Cow position:
               
chr5:66403975-66404211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr5:63185422-63185172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
42, 114
               

               
Conread position:
               
1-256
               

               
Cow position:
               
chr5:56820430-56820179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
233, 165
               

               
Conread position:
               
1-259
               

               
Cow position:
               
chr5:41951253-41951008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
233, 81
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr5:29212780-29213029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr5:9390367-9390645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
42, 91
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr5:41303259-41302986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
43, 70
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr5:48828986-48829246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
43, 125
               

               
Conread position:
               
1-266
               

               
Cow position:
               
chr5:7552587-7552321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
87, 81
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr5:40039939-40039669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
44, 155
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr5:69520722-69520988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
37, 117
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chr5:31480986-31481247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
83, 30
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chr5:37425574-37425841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
37, 85
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chr5:47704302-47704027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
43, 157
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chr5:61840018-61840287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
84, 166
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chr5:65887183-65886911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
43, 161
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr5:4507129-4506862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
43, 159
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr5:31469753-31469490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
82, 177
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr5:33661686-33661949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
43, 107
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr5:34049941-34050221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
42, 167
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr5:38853191-38853452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
43, 136
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr5:39094385-39094653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
82, 17
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr5:45409158-45409426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
80, 38
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr5:45705879-45706137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
80, 101
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr5:52040488-52040220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
40, 62
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr5:64697612-64697885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
40, 73
               

               
Conread position:
               
1-280
               

               
Cow position:
               
chr5:5938156-5938431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
82, 113
               

               
Conread position:
               
1-280
               

               
Cow position:
               
chr5:8162992-8162709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
31, 43
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr5:51151531-51151244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
41, 145
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chr5:55928774-55929057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
98, 92
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr5:50975717-50976013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
16, 278
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr5:43738120-43737848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
231, 49
               

               
Conread position:
               
1-289
               

               
Cow position:
               
chr5:52645244-52644962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
232, 33
               

               
Conread position:
               
1-291
               

               
Cow position:
               
chr5:61488281-61487993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
42, 170
               

               
Conread position:
               
1-292
               

               
Cow position:
               
chr5:65588539-65588820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
230, 30
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chr5:58793783-58793485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 60
               

               
Conread position:
               
1-297
               

               
Cow position:
               
chr5:31640259-31640551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 82
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr5:51935014-51935318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
34, 170
               

               
Conread position:
               
1-301
               

               
Cow position:
               
chr5:28927761-28927464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 215
               

               
Conread position:
               
1-301
               

               
Cow position:
               
chr5:57736946-57737229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
230, 30
               

               
Conread position:
               
1-301
               

               
Cow position:
               
chr5:75828904-75828623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
27, 43
               

               
Conread position:
               
1-302
               

               
Cow position:
               
chr5:4218709-4218988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
1-302
               

               
Cow position:
               
chr5:7723502-7723796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
75, 101
               

               
Conread position:
               
1-302
               

               
Cow position:
               
chr5:8821180-8820882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 100
               

               
Conread position:
               
1-302
               

               
Cow position:
               
chr5:9090192-9089897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 142
               

               
Conread position:
               
1-302
               

               
Cow position:
               
chr5:39258365-39258636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
77, 30
               

               
Conread position:
               
1-302
               

               
Cow position:
               
chr5:43992152-43992455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 169
               

               
Conread position:
               
1-302
               

               
Cow position:
               
chr5:62142502-62142807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 105
               

               
Conread position:
               
1-302
               

               
Cow position:
               
chr5:64758932-64758636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
77, 13
               

               
Conread position:
               
1-302
               

               
Cow position:
               
chr5:65933100-65932812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
35, 164
               

               
Conread position:
               
1-304
               

               
Cow position:
               
chr5:4710313-4710019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 68
               

               
Conread position:
               
1-304
               

               
Cow position:
               
chr5:44054206-44053922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
42, 70
               

               
Conread position:
               
1-304
               

               
Cow position:
               
chr5:50215728-50215431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
42, 162
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr5:46510035-46509728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 94
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr5:1950230-1949921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
178, 82
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr5:37377707-37377990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
239, 30
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr5:68604690-68604990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
130, 154
               

               
Conread position:
               
1-309
               

               
Cow position:
               
chr5:20783456-20783760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
232, 126
               

               
Conread position:
               
1-309
               

               
Cow position:
               
chr5:58855935-58856239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 167
               

               
Conread position:
               
1-314
               

               
Cow position:
               
chr5:12866997-12866685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
41, 184
               

               
Conread position:
               
1-314
               

               
Cow position:
               
chr5:15426357-15426681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 213
               

               
Conread position:
               
1-314
               

               
Cow position:
               
chr5:43457687-43457388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 106
               

               
Conread position:
               
1-314
               

               
Cow position:
               
chr5:63964341-63964025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
44, 142
               

               
Conread position:
               
1-315
               

               
Cow position:
               
chr5:458313-458632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
37, 170
               

               
Conread position:
               
1-315
               

               
Cow position:
               
chr5:23168987-23168682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 29
               

               
Conread position:
               
1-315
               

               
Cow position:
               
chr5:28324177-28324479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
12, 170
               

               
Conread position:
               
1-315
               

               
Cow position:
               
chr5:29771346-29771672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 97
               

               
Conread position:
               
1-315
               

               
Cow position:
               
chr5:37808833-37808519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 45
               

               
Conread position:
               
1-315
               

               
Cow position:
               
chr5:50533551-50533244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
1-315
               

               
Cow position:
               
chr5:54311164-54311480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 163
               

               
Conread position:
               
1-315
               

               
Cow position:
               
chr5:56317126-56317433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 101
               

               
Conread position:
               
1-315
               

               
Cow position:
               
chr5:61810624-61810915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
234, 30
               

               
Conread position:
               
1-315
               

               
Cow position:
               
chr5:63987615-63987301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 30
               

               
Conread position:
               
1-318
               

               
Cow position:
               
chr5:360115-359793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
37, 289
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chr5:6045119-6045444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chr5:46798083-46798388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
40, 86
               

               
Conread position:
               
1-320
               

               
Cow position:
               
chr5:27419889-27419582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
176, 45
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr5:65776554-65776229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 156
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chr5:3204666-3204992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
86, 23
               

               
Conread position:
               
1-337
               

               
Cow position:
               
chr5:6504048-6503716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
80, 106
               

               
Conread position:
               
1-337
               

               
Cow position:
               
chr5:26094338-26094001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
44, 133
               

               
Conread position:
               
1-354
               

               
Cow position:
               
chr5:26990225-26990568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
15, 48
               

               
Conread position:
               
1-362
               

               
Cow position:
               
chr5:37645905-37646271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
57, 42
               

               
Conread position:
               
1-362
               

               
Cow position:
               
chr5:50483030-50482662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
215, 75
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chr5:29353299-29352932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 40
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chr5:69731349-69731691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 27
               

               
Conread position:
               
1-372
               

               
Cow position:
               
chr5:24348943-24349299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 33
               

               
Conread position:
               
1-373
               

               
Cow position:
               
chr5:15722223-15721878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
230, 15
               

               
Conread position:
               
1-374
               

               
Cow position:
               
chr5:54350529-54350163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
83, 33
               

               
Conread position:
               
1-375
               

               
Cow position:
               
chr5:26097127-26097502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
85, 123
               

               
Conread position:
               
1-377
               

               
Cow position:
               
chr5:22643386-22643033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 97
               

               
Conread position:
               
1-377
               

               
Cow position:
               
chr5:57327624-57328011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 159
               

               
Conread position:
               
1-378
               

               
Cow position:
               
chr5:37064925-37065314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
41, 85
               

               
Conread position:
               
1-383
               

               
Cow position:
               
chr5:67932630-67932246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
44, 13
               

               
Conread position:
               
1-385
               

               
Cow position:
               
chr5:41164920-41165304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 32
               

               
Conread position:
               
1-387
               

               
Cow position:
               
chr5:53835546-53835945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 77
               

               
Conread position:
               
1-389
               

               
Cow position:
               
chr5:32394432-32394828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
87, 32
               

               
Conread position:
               
1-389
               

               
Cow position:
               
chr5:34624800-34625174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 85
               

               
Conread position:
               
1-389
               

               
Cow position:
               
chr5:35969374-35969766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
230, 101
               

               
Conread position:
               
1-389
               

               
Cow position:
               
chr5:64321580-64321988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 96
               

               
Conread position:
               
1-393
               

               
Cow position:
               
chr5:5257465-5257057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 79
               

               
Conread position:
               
1-393
               

               
Cow position:
               
chr5:20127885-20128285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 65
               

               
Conread position:
               
1-393
               

               
Cow position:
               
chr5:28224284-28224672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 156
               

               
Conread position:
               
1-393
               

               
Cow position:
               
chr5:29756169-29756547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
33, 88
               

               
Conread position:
               
1-393
               

               
Cow position:
               
chr5:31096972-31096571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
53, 106
               

               
Conread position:
               
1-394
               

               
Cow position:
               
chr5:2309732-2309327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 27
               

               
Conread position:
               
1-395
               

               
Cow position:
               
chr5:55942566-55942146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 149
               

               
Conread position:
               
1-396
               

               
Cow position:
               
chr5:52165351-52164941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 171
               

               
Conread position:
               
1-397
               

               
Cow position:
               
chr5:7044879-7044472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 164
               

               
Conread position:
               
1-397
               

               
Cow position:
               
chr5:30253573-30253974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
230, 161
               

               
Conread position:
               
1-397
               

               
Cow position:
               
chr5:47871219-47870820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 177
               

               
Conread position:
               
1-397
               

               
Cow position:
               
chr5:64176289-64175896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 145
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr5:55756608-55756177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 191
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr5:71454763-71454385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
230, 100
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chr5:14314353-14314752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 314
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chr5:14904242-14903828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
77, 52
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chr5:28302908-28302521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 72
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chr5:3242642-3242255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
350, 45
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chr5:8024361-8023976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chr5:17063262-17062845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 21
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chr5:26377835-26377444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 80
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chr5:32975720-32975322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
84, 42
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chr5:45225993-45225582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 250
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chr5:47601648-47602048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 23
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chr5:50722878-50723288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 145
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chr5:52667859-52668278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
42, 14
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chr5:52831274-52831715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
54, 49
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chr5:62107663-62107244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
42, 162
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chr5:72035253-72034861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
78, 38
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chr5:72895524-72895925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 33
               

               
Conread position:
               
1-403
               

               
Cow position:
               
chr5:6572583-6572973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
44, 129
               

               
Conread position:
               
1-403
               

               
Cow position:
               
chr5:19778752-19778324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
54, 49
               

               
Conread position:
               
1-404
               

               
Cow position:
               
chr5:49685449-49685025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 177
               

               
Conread position:
               
1-405
               

               
Cow position:
               
chr5:37646719-37646315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 66
               

               
Conread position:
               
1-405
               

               
Cow position:
               
chr5:40595170-40594800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
363, 23
               

               
Conread position:
               
1-405
               

               
Cow position:
               
chr5:41452835-41452448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
38, 57
               

               
Conread position:
               
1-405
               

               
Cow position:
               
chr5:42845769-42845355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 370
               

               
Conread position:
               
1-405
               

               
Cow position:
               
chr5:56014566-56014964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
230, 111
               

               
Conread position:
               
1-406
               

               
Cow position:
               
chr5:17999663-17999251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 163
               

               
Conread position:
               
1-406
               

               
Cow position:
               
chr5:22242954-22242532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 141
               

               
Conread position:
               
1-406
               

               
Cow position:
               
chr5:33080957-33080577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
78, 105
               

               
Conread position:
               
1-407
               

               
Cow position:
               
chr5:15478945-15479371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 171
               

               
Conread position:
               
1-407
               

               
Cow position:
               
chr5:18574002-18574426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 108
               

               
Conread position:
               
1-407
               

               
Cow position:
               
chr5:39936934-39937359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 106
               

               
Conread position:
               
1-408
               

               
Cow position:
               
chr5:59082364-59081949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
40, 81
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr5:12322969-12322567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 126
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr5:16938176-16937791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
75, 15
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr5:30092798-30092382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
42, 30
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr5:50900737-50901146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
189, 17
               

               
Conread position:
               
1-410
               

               
Cow position:
               
chr5:39447699-39447278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 98
               

               
Conread position:
               
1-410
               

               
Cow position:
               
chr5:44994206-44993792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
314, 127
               

               
Conread position:
               
1-410
               

               
Cow position:
               
chr5:51053816-51053400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
225, 110
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr5:34441960-34441555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
26, 48
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr5:65752688-65753107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 295
               

               
Conread position:
               
1-412
               

               
Cow position:
               
chr5:16893944-16893532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 105
               

               
Conread position:
               
1-412
               

               
Cow position:
               
chr5:36868577-36868989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
77, 55
               

               
Conread position:
               
1-412
               

               
Cow position:
               
chr5:41010165-41009761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 116
               

               
Conread position:
               
1-412
               

               
Cow position:
               
chr5:44796887-44796489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 30
               

               
Conread position:
               
1-413
               

               
Cow position:
               
chr5:4280295-4280696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 42
               

               
Conread position:
               
1-413
               

               
Cow position:
               
chr5:44848185-44847777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 21
               

               
Conread position:
               
1-413
               

               
Cow position:
               
chr5:63647643-63647229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 18
               

               
Conread position:
               
1-414
               

               
Cow position:
               
chr5:4220812-4221218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 158
               

               
Conread position:
               
1-414
               

               
Cow position:
               
chr5:14550754-14550332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 165
               

               
Conread position:
               
1-414
               

               
Cow position:
               
chr5:16025629-16025233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 128
               

               
Conread position:
               
1-414
               

               
Cow position:
               
chr5:57074503-57074086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 133
               

               
Conread position:
               
1-415
               

               
Cow position:
               
chr5:11427410-11426982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 156
               

               
Conread position:
               
1-416
               

               
Cow position:
               
chr5:17371870-17371442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
78, 38
               

               
Conread position:
               
1-416
               

               
Cow position:
               
chr5:30844942-30845357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 132
               

               
Conread position:
               
1-416
               

               
Cow position:
               
chr5:57591522-57591940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
40, 105
               

               
Conread position:
               
1-416
               

               
Cow position:
               
chr5:62870205-62869811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
39, 79
               

               
Conread position:
               
1-417
               

               
Cow position:
               
chr5:12873575-12874006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
63, 49
               

               
Conread position:
               
1-417
               

               
Cow position:
               
chr5:34506094-34505666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
80, 101
               

               
Conread position:
               
1-417
               

               
Cow position:
               
chr5:41604444-41604855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
22, 201
               

               
Conread position:
               
1-417
               

               
Cow position:
               
chr5:50943322-50942903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 168
               

               
Conread position:
               
1-420
               

               
Cow position:
               
chr5:30178679-30178238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
43, 145
               

               
Conread position:
               
1-420
               

               
Cow position:
               
chr5:40152307-40152745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
49, 156
               

               
Conread position:
               
1-420
               

               
Cow position:
               
chr5:66338915-66339328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
264, 12
               

               
Conread position:
               
1-421
               

               
Cow position:
               
chr5:56467536-56467924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 33
               

               
Conread position:
               
1-421
               

               
Cow position:
               
chr5:71722892-71723338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
31, 148
               

               
Conread position:
               
1-421
               

               
Cow position:
               
chr5:74610860-74610442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
53, 42
               

               
Conread position:
               
2-138
               

               
Cow position:
               
chr5:69099361-69099501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
2-142
               

               
Cow position:
               
chr5:12672194-12672057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
2-166
               

               
Cow position:
               
chr5:62027114-62026951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
82, 48
               

               
Conread position:
               
2-197
               

               
Cow position:
               
chr5:59443419-59443223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
34, 120
               

               
Conread position:
               
2-206
               

               
Cow position:
               
chr5:9859886-9859678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
43, 109
               

               
Conread position:
               
2-209
               

               
Cow position:
               
chr5:51357671-51357464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
41, 157
               

               
Conread position:
               
2-210
               

               
Cow position:
               
chr5:72310547-72310741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
2-211
               

               
Cow position:
               
chr5:8994733-8994526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
2-214
               

               
Cow position:
               
chr5:34915974-34916173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
2-216
               

               
Cow position:
               
chr5:6086729-6086516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
39, 164
               

               
Conread position:
               
2-219
               

               
Cow position:
               
chr5:26790619-26790408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
82, 20
               

               
Conread position:
               
2-219
               

               
Cow position:
               
chr5:43816779-43816556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
43, 115
               

               
Conread position:
               
2-224
               

               
Cow position:
               
chr5:24485593-24485382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
2-234
               

               
Cow position:
               
chr5:40928141-40927917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
2-238
               

               
Cow position:
               
chr5:34885323-34885096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
81, 111
               

               
Conread position:
               
2-238
               

               
Cow position:
               
chr5:64823480-64823244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
49, 111
               

               
Conread position:
               
2-251
               

               
Cow position:
               
chr5:28926355-28926100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
36, 156
               

               
Conread position:
               
2-254
               

               
Cow position:
               
chr5:34638718-34638967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
229, 39
               

               
Conread position:
               
2-254
               

               
Cow position:
               
chr5:47313306-47313556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
41, 16
               

               
Conread position:
               
2-260
               

               
Cow position:
               
chr5:44583286-44583023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
164, 29
               

               
Conread position:
               
2-263
               

               
Cow position:
               
chr5:47547885-47547631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
75, 166
               

               
Conread position:
               
2-263
               

               
Cow position:
               
chr5:65601293-65601549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
79, 127
               

               
Conread position:
               
2-270
               

               
Cow position:
               
chr5:21524997-21525258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
42, 180
               

               
Conread position:
               
2-270
               

               
Cow position:
               
chr5:50637662-50637920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
64, 41
               

               
Conread position:
               
2-274
               

               
Cow position:
               
chr5:23140740-23140486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
81, 29
               

               
Conread position:
               
2-274
               

               
Cow position:
               
chr5:44049535-44049801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
80, 26
               

               
Conread position:
               
2-274
               

               
Cow position:
               
chr5:61576372-61576648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
39, 152
               

               
Conread position:
               
2-280
               

               
Cow position:
               
chr5:33414576-33414302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
55, 29
               

               
Conread position:
               
2-289
               

               
Cow position:
               
chr5:20407834-20407560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 126
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr5:32696980-32696704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 16
               

               
Conread position:
               
2-298
               

               
Cow position:
               
chr5:42744626-42744907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
225, 7
               

               
Conread position:
               
2-298
               

               
Cow position:
               
chr5:48010014-48009732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 39
               

               
Conread position:
               
2-302
               

               
Cow position:
               
chr5:44752478-44752176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
108, 100
               

               
Conread position:
               
2-302
               

               
Cow position:
               
chr5:52000051-52000349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 169
               

               
Conread position:
               
2-302
               

               
Cow position:
               
chr5:60715522-60715237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
68, 48
               

               
Conread position:
               
2-304
               

               
Cow position:
               
chr5:57626639-57626921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 110
               

               
Conread position:
               
2-304
               

               
Cow position:
               
chr5:67243758-67244051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 114
               

               
Conread position:
               
2-305
               

               
Cow position:
               
chr5:74003795-74003501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 22
               

               
Conread position:
               
2-306
               

               
Cow position:
               
chr5:45803893-45804195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 20
               

               
Conread position:
               
2-314
               

               
Cow position:
               
chr5:5111244-5110926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 68
               

               
Conread position:
               
2-314
               

               
Cow position:
               
chr5:30950087-30949772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 133
               

               
Conread position:
               
2-314
               

               
Cow position:
               
chr5:75437064-75436746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
32, 169
               

               
Conread position:
               
2-315
               

               
Cow position:
               
chr5:3639649-3639353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
2-315
               

               
Cow position:
               
chr5:43929901-43929592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 39
               

               
Conread position:
               
2-325
               

               
Cow position:
               
chr5:54086368-54086693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
77, 47
               

               
Conread position:
               
2-329
               

               
Cow position:
               
chr5:62638738-62639059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
25, 165
               

               
Conread position:
               
2-343
               

               
Cow position:
               
chr5:42777597-42777926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
77, 48
               

               
Conread position:
               
2-368
               

               
Cow position:
               
chr5:57575598-57575967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 169
               

               
Conread position:
               
2-372
               

               
Cow position:
               
chr5:35826423-35826807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 155
               

               
Conread position:
               
2-382
               

               
Cow position:
               
chr5:50599886-50600265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 131
               

               
Conread position:
               
2-383
               

               
Cow position:
               
chr5:65136116-65136477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 74
               

               
Conread position:
               
2-389
               

               
Cow position:
               
chr5:18898816-18899182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
231, 41
               

               
Conread position:
               
2-389
               

               
Cow position:
               
chr5:29903690-29903317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 159
               

               
Conread position:
               
2-392
               

               
Cow position:
               
chr5:17087196-17086788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 144
               

               
Conread position:
               
2-393
               

               
Cow position:
               
chr5:9894293-9893895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 5
               

               
Conread position:
               
2-393
               

               
Cow position:
               
chr5:21617288-21617685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 97
               

               
Conread position:
               
2-393
               

               
Cow position:
               
chr5:29061092-29060709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
79, 31
               

               
Conread position:
               
2-393
               

               
Cow position:
               
chr5:35684767-35685163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 113
               

               
Conread position:
               
2-393
               

               
Cow position:
               
chr5:56070685-56071088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
2-393
               

               
Cow position:
               
chr5:65941421-65941020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 132
               

               
Conread position:
               
2-393
               

               
Cow position:
               
chr5:66257474-66257866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
306, 43
               

               
Conread position:
               
2-394
               

               
Cow position:
               
chr5:41713142-41713513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 32
               

               
Conread position:
               
2-394
               

               
Cow position:
               
chr5:62172251-62172629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
229, 43
               

               
Conread position:
               
2-394
               

               
Cow position:
               
chr5:64139395-64139795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 144
               

               
Conread position:
               
2-399
               

               
Cow position:
               
chr5:44028469-44028073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 96
               

               
Conread position:
               
2-400
               

               
Cow position:
               
chr5:72007020-72006642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
366, 41
               

               
Conread position:
               
2-401
               

               
Cow position:
               
chr5:47317137-47316737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
235, 48
               

               
Conread position:
               
2-402
               

               
Cow position:
               
chr5:21828697-21829103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 162
               

               
Conread position:
               
2-402
               

               
Cow position:
               
chr5:24996393-24995980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 20
               

               
Conread position:
               
2-402
               

               
Cow position:
               
chr5:72903395-72903001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 32
               

               
Conread position:
               
2-403
               

               
Cow position:
               
chr5:34561841-34562250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 170
               

               
Conread position:
               
2-403
               

               
Cow position:
               
chr5:45472098-45472515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 180
               

               
Conread position:
               
2-406
               

               
Cow position:
               
chr5:11229841-11229428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 161
               

               
Conread position:
               
2-406
               

               
Cow position:
               
chr5:56028698-56028303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 128
               

               
Conread position:
               
2-407
               

               
Cow position:
               
chr5:26467452-26467867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 403
               

               
Conread position:
               
2-407
               

               
Cow position:
               
chr5:55967050-55966627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 167
               

               
Conread position:
               
2-409
               

               
Cow position:
               
chr5:11668346-11667937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 32
               

               
Conread position:
               
2-411
               

               
Cow position:
               
chr5:15363723-15364117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 118
               

               
Conread position:
               
2-412
               

               
Cow position:
               
chr5:69461167-69461590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 126
               

               
Conread position:
               
2-416
               

               
Cow position:
               
chr5:29827886-29828301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 29
               

               
Conread position:
               
2-417
               

               
Cow position:
               
chr5:3549945-3549552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 29
               

               
Conread position:
               
3-173
               

               
Cow position:
               
chr5:55821200-55821379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-197
               

               
Cow position:
               
chr5:50950387-50950579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
19, 159
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chr5:43474681-43474877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
158, 0
               

               
Conread position:
               
3-211
               

               
Cow position:
               
chr5:6130186-6130393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
73, 159
               

               
Conread position:
               
3-211
               

               
Cow position:
               
chr5:54064613-54064815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
75, 36
               

               
Conread position:
               
3-218
               

               
Cow position:
               
chr5:4797477-4797277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
3-227
               

               
Cow position:
               
chr5:60126207-60126430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
213, 63
               

               
Conread position:
               
3-231
               

               
Cow position:
               
chr5:54405062-54404831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
40, 55
               

               
Conread position:
               
3-234
               

               
Cow position:
               
chr5:49362158-49361930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
40, 100
               

               
Conread position:
               
3-248
               

               
Cow position:
               
chr5:18090561-18090816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
78, 31
               

               
Conread position:
               
3-252
               

               
Cow position:
               
chr5:26595271-26595022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
56, 102
               

               
Conread position:
               
3-263
               

               
Cow position:
               
chr5:61600246-61600499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
41, 158
               

               
Conread position:
               
3-274
               

               
Cow position:
               
chr5:64137085-64137359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 161
               

               
Conread position:
               
3-295
               

               
Cow position:
               
chr5:22934623-22934332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
35, 164
               

               
Conread position:
               
3-302
               

               
Cow position:
               
chr5:28229991-28230295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
141, 67
               

               
Conread position:
               
3-304
               

               
Cow position:
               
chr5:74015773-74016073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 158
               

               
Conread position:
               
3-305
               

               
Cow position:
               
chr5:63992329-63992038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
230, 95
               

               
Conread position:
               
3-307
               

               
Cow position:
               
chr5:19813380-19813083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 11
               

               
Conread position:
               
3-309
               

               
Cow position:
               
chr5:15598400-15598099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 129
               

               
Conread position:
               
3-315
               

               
Cow position:
               
chr5:47323284-47323606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
38, 173
               

               
Conread position:
               
3-328
               

               
Cow position:
               
chr5:72564595-72564919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 47
               

               
Conread position:
               
3-362
               

               
Cow position:
               
chr5:64524047-64523668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 155
               

               
Conread position:
               
3-376
               

               
Cow position:
               
chr5:6286593-6286239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 131
               

               
Conread position:
               
3-389
               

               
Cow position:
               
chr5:30629324-30628927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
228, 128
               

               
Conread position:
               
3-389
               

               
Cow position:
               
chr5:61725803-61726183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 74
               

               
Conread position:
               
3-392
               

               
Cow position:
               
chr5:27411562-27411196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
38, 67
               

               
Conread position:
               
3-393
               

               
Cow position:
               
chr5:3771680-3772072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 43
               

               
Conread position:
               
3-393
               

               
Cow position:
               
chr5:6528514-6528894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 105
               

               
Conread position:
               
3-393
               

               
Cow position:
               
chr5:17027928-17028306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
34, 58
               

               
Conread position:
               
3-397
               

               
Cow position:
               
chr5:45845862-45845456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 123
               

               
Conread position:
               
3-408
               

               
Cow position:
               
chr5:55176720-55177126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 203
               

               
Conread position:
               
3-414
               

               
Cow position:
               
chr5:59115214-59115629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 165
               

               
Conread position:
               
3-414
               

               
Cow position:
               
chr5:69337661-69338063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 112
               

               
Conread position:
               
3-415
               

               
Cow position:
               
chr5:37941959-37941555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 130
               

               
Conread position:
               
3-418
               

               
Cow position:
               
chr5:38832953-38833368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 123
               

               
Conread position:
               
4-165
               

               
Cow position:
               
chr5:39242355-39242202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
4-166
               

               
Cow position:
               
chr5:43395304-43395146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
80, 49
               

               
Conread position:
               
4-220
               

               
Cow position:
               
chr5:21944216-21944446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
28, 164
               

               
Conread position:
               
4-237
               

               
Cow position:
               
chr5:32956261-32956029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
166, 0
               

               
Conread position:
               
4-244
               

               
Cow position:
               
chr5:28456576-28456332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
33, 157
               

               
Conread position:
               
4-244
               

               
Cow position:
               
chr5:28459878-28459633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
33, 94
               

               
Conread position:
               
4-267
               

               
Cow position:
               
chr5:741110-740844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
56, 143
               

               
Conread position:
               
4-269
               

               
Cow position:
               
chr5:16508925-16509204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
4-312
               

               
Cow position:
               
chr5:34463751-34463439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
12, 178
               

               
Conread position:
               
4-325
               

               
Cow position:
               
chr5:34528396-34528700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 103
               

               
Conread position:
               
4-362
               

               
Cow position:
               
chr5:36855047-36855391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
84, 27
               

               
Conread position:
               
4-380
               

               
Cow position:
               
chr5:74580627-74581003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 107
               

               
Conread position:
               
4-390
               

               
Cow position:
               
chr5:65967897-65967510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 126
               

               
Conread position:
               
4-392
               

               
Cow position:
               
chr5:55955740-55956139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 76
               

               
Conread position:
               
4-392
               

               
Cow position:
               
chr5:66972257-66972659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 163
               

               
Conread position:
               
4-393
               

               
Cow position:
               
chr5:27102953-27102583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
229, 34
               

               
Conread position:
               
4-393
               

               
Cow position:
               
chr5:57935279-57934890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 163
               

               
Conread position:
               
4-398
               

               
Cow position:
               
chr5:56524006-56524397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 111
               

               
Conread position:
               
4-413
               

               
Cow position:
               
chr5:4322245-4322661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
37, 82
               

               
Conread position:
               
4-419
               

               
Cow position:
               
chr5:4617208-4617595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
46, 39
               

               
Conread position:
               
5-183
               

               
Cow position:
               
chr5:56433634-56433818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
5-187
               

               
Cow position:
               
chr5:6575752-6575574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
73, 38
               

               
Conread position:
               
5-218
               

               
Cow position:
               
chr5:27015516-27015726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
38, 129
               

               
Conread position:
               
5-260
               

               
Cow position:
               
chr5:35209641-35209386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
32, 83
               

               
Conread position:
               
5-261
               

               
Cow position:
               
chr5:38805505-38805254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
9, 78
               

               
Conread position:
               
5-281
               

               
Cow position:
               
chr5:41636708-41636977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
104, 25
               

               
Conread position:
               
5-301
               

               
Cow position:
               
chr5:56518374-56518092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
226, 150
               

               
Conread position:
               
5-303
               

               
Cow position:
               
chr5:14629980-14629673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 23
               

               
Conread position:
               
5-308
               

               
Cow position:
               
chr5:6896288-6895990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
9, 62
               

               
Conread position:
               
5-308
               

               
Cow position:
               
chr5:59325993-59325705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
80, 36
               

               
Conread position:
               
5-386
               

               
Cow position:
               
chr5:11540208-11539829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
83, 26
               

               
Conread position:
               
5-389
               

               
Cow position:
               
chr5:71494653-71495039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 122
               

               
Conread position:
               
5-407
               

               
Cow position:
               
chr5:30302731-30303126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
354, 38
               

               
Conread position:
               
5-409
               

               
Cow position:
               
chr5:30276529-30276931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 152
               

               
Conread position:
               
5-414
               

               
Cow position:
               
chr5:41598866-41598480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
9, 83
               

               
Conread position:
               
5-416
               

               
Cow position:
               
chr5:1247112-1247516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 77
               

               
Conread position:
               
5-416
               

               
Cow position:
               
chr5:3627321-3626927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 162
               

               
Conread position:
               
5-419
               

               
Cow position:
               
chr5:59093-58670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 102
               

               
Conread position:
               
6-180
               

               
Cow position:
               
chr5:64060457-64060282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
71, 89
               

               
Conread position:
               
6-225
               

               
Cow position:
               
chr5:10261402-10261180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
39, 87
               

               
Conread position:
               
6-249
               

               
Cow position:
               
chr5:32140871-32140630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 110
               

               
Conread position:
               
6-273
               

               
Cow position:
               
chr5:3281668-3281937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
39, 102
               

               
Conread position:
               
6-307
               

               
Cow position:
               
chr5:40357034-40356710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
36, 274
               

               
Conread position:
               
6-308
               

               
Cow position:
               
chr5:54060110-54060413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 132
               

               
Conread position:
               
6-385
               

               
Cow position:
               
chr5:16214524-16214903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 60
               

               
Conread position:
               
6-393
               

               
Cow position:
               
chr5:26262839-26262455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 86
               

               
Conread position:
               
6-406
               

               
Cow position:
               
chr5:47888878-47888488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
31, 133
               

               
Conread position:
               
6-415
               

               
Cow position:
               
chr5:58519568-58519161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
76, 126
               

               
Conread position:
               
6-420
               

               
Cow position:
               
chr5:46512930-46512511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 156
               

               
Conread position:
               
7-248
               

               
Cow position:
               
chr5:21920205-21920457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
36, 225
               

               
Conread position:
               
7-314
               

               
Cow position:
               
chr5:37814461-37814769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 49
               

               
Conread position:
               
7-393
               

               
Cow position:
               
chr5:55068543-55068931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 99
               

               
Conread position:
               
7-403
               

               
Cow position:
               
chr5:57768135-57767747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 24
               

               
Conread position:
               
8-219
               

               
Cow position:
               
chr5:1779426-1779238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
8-315
               

               
Cow position:
               
chr5:41546052-41545749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 85
               

               
Conread position:
               
8-393
               

               
Cow position:
               
chr5:43923311-43922940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 94
               

               
Conread position:
               
8-393
               

               
Cow position:
               
chr5:54089880-54090243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
6, 91
               

               
Conread position:
               
9-125
               

               
Cow position:
               
chr5:39872688-39872801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
51, 90
               

               
Conread position:
               
9-211
               

               
Cow position:
               
chr5:71579013-71579215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
23, 160
               

               
Conread position:
               
9-263
               

               
Cow position:
               
chr5:36255420-36255165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
71, 93
               

               
Conread position:
               
9-283
               

               
Cow position:
               
chr5:46426011-46425743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 119
               

               
Conread position:
               
9-377
               

               
Cow position:
               
chr5:45397418-45397779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
307, 95
               

               
Conread position:
               
9-421
               

               
Cow position:
               
chr5:66581803-66582227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
73, 146
               

               
Conread position:
               
10-177
               

               
Cow position:
               
chr5:34167801-34167967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
97, 45
               

               
Conread position:
               
10-205
               

               
Cow position:
               
chr5:49820980-49821173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
33, 125
               

               
Conread position:
               
10-308
               

               
Cow position:
               
chr5:30332784-30333087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
97, 38
               

               
Conread position:
               
10-400
               

               
Cow position:
               
chr5:20779541-20779161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
223, 24
               

               
Conread position:
               
11-205
               

               
Cow position:
               
chr5:34288629-34288435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
34, 63
               

               
Conread position:
               
11-260
               

               
Cow position:
               
chr5:72172865-72173116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
29, 111
               

               
Conread position:
               
11-267
               

               
Cow position:
               
chr5:46122512-46122257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
25, 141
               

               
Conread position:
               
11-291
               

               
Cow position:
               
chr5:51502854-51503122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
49, 32
               

               
Conread position:
               
11-304
               

               
Cow position:
               
chr5:25231166-25230886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 97
               

               
Conread position:
               
11-317
               

               
Cow position:
               
chr5:6683509-6683221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
93, 20
               

               
Conread position:
               
11-372
               

               
Cow position:
               
chr5:17768305-17767944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
32, 61
               

               
Conread position:
               
11-402
               

               
Cow position:
               
chr5:43858590-43858179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 71
               

               
Conread position:
               
12-307
               

               
Cow position:
               
chr5:50821621-50821919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 154
               

               
Conread position:
               
12-376
               

               
Cow position:
               
chr5:12351947-12351599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
39, 105
               

               
Conread position:
               
12-389
               

               
Cow position:
               
chr5:48143948-48143564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
35, 175
               

               
Conread position:
               
12-418
               

               
Cow position:
               
chr5:44673526-44673961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
13-197
               

               
Cow position:
               
chr5:44849879-44849706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
72, 33
               

               
Conread position:
               
13-232
               

               
Cow position:
               
chr5:23866317-23866111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
13-292
               

               
Cow position:
               
chr5:67540360-67540080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 119
               

               
Conread position:
               
13-393
               

               
Cow position:
               
chr5:42050391-42050774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 123
               

               
Conread position:
               
14-270
               

               
Cow position:
               
chr5:55750407-55750158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
64, 115
               

               
Conread position:
               
14-282
               

               
Cow position:
               
chr5:64398851-64399119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
27, 161
               

               
Conread position:
               
14-308
               

               
Cow position:
               
chr5:53710849-53710552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
34, 39
               

               
Conread position:
               
14-315
               

               
Cow position:
               
chr5:4032150-4031842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
14-381
               

               
Cow position:
               
chr5:47696598-47696242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 111
               

               
Conread position:
               
14-395
               

               
Cow position:
               
chr5:40388026-40387670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
14-412
               

               
Cow position:
               
chr5:55232948-55232576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
277, 49
               

               
Conread position:
               
15-204
               

               
Cow position:
               
chr5:65924850-65924657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
72, 157
               

               
Conread position:
               
15-394
               

               
Cow position:
               
chr5:30487084-30487458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
65, 38
               

               
Conread position:
               
15-405
               

               
Cow position:
               
chr5:42064043-42064450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
28, 152
               

               
Conread position:
               
15-407
               

               
Cow position:
               
chr5:35247265-35246861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 93
               

               
Conread position:
               
15-413
               

               
Cow position:
               
chr5:27154865-27155253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 69
               

               
Conread position:
               
16-163
               

               
Cow position:
               
chr5:31020286-31020143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
137, 25
               

               
Conread position:
               
17-392
               

               
Cow position:
               
chr5:27615363-27615722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
84, 26
               

               
Conread position:
               
18-238
               

               
Cow position:
               
chr5:45940763-45940542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
148, 79
               

               
Conread position:
               
18-387
               

               
Cow position:
               
chr5:40109347-40109708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 81
               

               
Conread position:
               
18-395
               

               
Cow position:
               
chr5:19278851-19278472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 131
               

               
Conread position:
               
18-406
               

               
Cow position:
               
chr5:25495497-25495112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 23
               

               
Conread position:
               
19-304
               

               
Cow position:
               
chr5:44726477-44726201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 143
               

               
Conread position:
               
19-317
               

               
Cow position:
               
chr5:37068746-37069029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
214, 5
               

               
Conread position:
               
19-378
               

               
Cow position:
               
chr5:12673610-12673265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
297, 34
               

               
Conread position:
               
19-394
               

               
Cow position:
               
chr5:56877338-56877701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 71
               

               
Conread position:
               
19-398
               

               
Cow position:
               
chr5:35459445-35459059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
26, 65
               

               
Conread position:
               
19-401
               

               
Cow position:
               
chr5:22666944-22667310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 21
               

               
Conread position:
               
20-218
               

               
Cow position:
               
chr5:37714047-37713848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
89, 170
               

               
Conread position:
               
21-211
               

               
Cow position:
               
chr5:23856315-23856121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
11, 116
               

               
Conread position:
               
21-225
               

               
Cow position:
               
chr5:51801118-51800919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
58, 34
               

               
Conread position:
               
22-313
               

               
Cow position:
               
chr5:16206307-16206013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 138
               

               
Conread position:
               
22-387
               

               
Cow position:
               
chr5:12761263-12760896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
56, 48
               

               
Conread position:
               
24-218
               

               
Cow position:
               
chr5:50972385-50972576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
54, 104
               

               
Conread position:
               
24-257
               

               
Cow position:
               
chr5:39182056-39181830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
88, 99
               

               
Conread position:
               
24-284
               

               
Cow position:
               
chr5:65883921-65883659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
59, 129
               

               
Conread position:
               
24-397
               

               
Cow position:
               
chr5:74643814-74643450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
339, 17
               

               
Conread position:
               
24-414
               

               
Cow position:
               
chr5:39695508-39695883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
159, 76
               

               
Conread position:
               
25-207
               

               
Cow position:
               
chr5:47721393-47721579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
15, 130
               

               
Conread position:
               
25-408
               

               
Cow position:
               
chr5:53855550-53855961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
55, 139
               

               
Conread position:
               
27-170
               

               
Cow position:
               
chr5:19294628-19294487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
137, 35
               

               
Conread position:
               
27-215
               

               
Cow position:
               
chr5:7921542-7921361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
27-301
               

               
Cow position:
               
chr5:39874979-39875254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
16, 120
               

               
Conread position:
               
27-303
               

               
Cow position:
               
chr5:34300776-34301048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
234, 16
               

               
Conread position:
               
27-335
               

               
Cow position:
               
chr5:20422325-20422029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
301, 16
               

               
Conread position:
               
28-204
               

               
Cow position:
               
chr5:56334536-56334719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
28-321
               

               
Cow position:
               
chr5:29844138-29844428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
79, 68
               

               
Conread position:
               
28-389
               

               
Cow position:
               
chr5:53842143-53842517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
152, 58
               

               
Conread position:
               
28-402
               

               
Cow position:
               
chr5:29097218-29097605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
50, 131
               

               
Conread position:
               
29-252
               

               
Cow position:
               
chr5:25447424-25447645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
53, 20
               

               
Conread position:
               
30-405
               

               
Cow position:
               
chr5:991327-991715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 120
               

               
Conread position:
               
31-397
               

               
Cow position:
               
chr5:35763140-35763478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
33-211
               

               
Cow position:
               
chr5:38647223-38647394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
33-409
               

               
Cow position:
               
chr5:44447005-44446629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 130
               

               
Conread position:
               
34-288
               

               
Cow position:
               
chr5:65765262-65765012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
46, 12
               

               
Conread position:
               
34-320
               

               
Cow position:
               
chr5:7755697-7755422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 121
               

               
Conread position:
               
34-321
               

               
Cow position:
               
chr5:4166527-4166791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
200, 51
               

               
Conread position:
               
34-389
               

               
Cow position:
               
chr5:3582440-3582781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 36
               

               
Conread position:
               
34-389
               

               
Cow position:
               
chr5:25035377-25035028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
272, 12
               

               
Conread position:
               
34-400
               

               
Cow position:
               
chr5:73168133-73167778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
56, 19
               

               
Conread position:
               
34-404
               

               
Cow position:
               
chr5:70952011-70951654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
283, 125
               

               
Conread position:
               
34-410
               

               
Cow position:
               
chr5:50857802-50858183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
196, 55
               

               
Conread position:
               
34-415
               

               
Cow position:
               
chr5:59057886-59057494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
51, 97
               

               
Conread position:
               
36-402
               

               
Cow position:
               
chr5:66366385-66366737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 45
               

               
Conread position:
               
37-269
               

               
Cow position:
               
chr5:63865663-63865893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 125
               

               
Conread position:
               
37-313
               

               
Cow position:
               
chr5:45574485-45574762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 13
               

               
Conread position:
               
37-335
               

               
Cow position:
               
chr5:14473549-14473239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
16, 6
               

               
Conread position:
               
39-256
               

               
Cow position:
               
chr5:31144917-31144702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 39
               

               
Conread position:
               
39-302
               

               
Cow position:
               
chr5:45273631-45273371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
49, 116
               

               
Conread position:
               
39-305
               

               
Cow position:
               
chr5:21040106-21039849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
39, 106
               

               
Conread position:
               
39-305
               

               
Cow position:
               
chr5:59717618-59717870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
208, 67
               

               
Conread position:
               
39-307
               

               
Cow position:
               
chr5:31561402-31561671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
35, 228
               

               
Conread position:
               
39-315
               

               
Cow position:
               
chr5:54768040-54767765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 122
               

               
Conread position:
               
39-328
               

               
Cow position:
               
chr5:63427136-63426849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
42, 27
               

               
Conread position:
               
39-389
               

               
Cow position:
               
chr5:64140400-64140764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
41, 125
               

               
Conread position:
               
39-393
               

               
Cow position:
               
chr5:57101906-57101567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 84
               

               
Conread position:
               
39-395
               

               
Cow position:
               
chr5:23529403-23529070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
73, 23
               

               
Conread position:
               
39-401
               

               
Cow position:
               
chr5:7057537-7057158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 134
               

               
Conread position:
               
40-402
               

               
Cow position:
               
chr5:41227113-41226763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
39, 116
               

               
Conread position:
               
41-301
               

               
Cow position:
               
chr5:58490589-58490858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
43, 81
               

               
Conread position:
               
41-412
               

               
Cow position:
               
chr5:64027136-64026760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 117
               

               
Conread position:
               
41-413
               

               
Cow position:
               
chr5:69047490-69047133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
38, 31
               

               
Conread position:
               
42-301
               

               
Cow position:
               
chr5:60747403-60747151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
42-411
               

               
Cow position:
               
chr5:18289002-18289362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 124
               

               
Conread position:
               
43-302
               

               
Cow position:
               
chr5:56680121-56680387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
35, 110
               

               
Conread position:
               
43-420
               

               
Cow position:
               
chr5:19335913-19335523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
34, 121
               

               
Conread position:
               
46-362
               

               
Cow position:
               
chr5:3002795-3003102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
38, 8
               

               
Conread position:
               
46-390
               

               
Cow position:
               
chr5:32339087-32338734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 84
               

               
Conread position:
               
47-251
               

               
Cow position:
               
chr5:50799418-50799614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
184, 68
               

               
Conread position:
               
48-402
               

               
Cow position:
               
chr5:12557410-12557048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 14
               

               
Conread position:
               
49-314
               

               
Cow position:
               
chr5:64592212-64591952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 13
               

               
Conread position:
               
50-219
               

               
Cow position:
               
chr5:34115531-34115700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
50-266
               

               
Cow position:
               
chr5:73080083-73080300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
95, 42
               

               
Conread position:
               
50-291
               

               
Cow position:
               
chr5:49440991-49440751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 80
               

               
Conread position:
               
50-315
               

               
Cow position:
               
chr5:26477131-26476874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
101, 76
               

               
Conread position:
               
50-393
               

               
Cow position:
               
chr5:16179644-16179293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
34, 57
               

               
Conread position:
               
51-325
               

               
Cow position:
               
chr5:19523779-19524051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
32, 104
               

               
Conread position:
               
51-403
               

               
Cow position:
               
chr5:12434418-12434774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 10
               

               
Conread position:
               
52-321
               

               
Cow position:
               
chr5:6891135-6890875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
180, 162
               

               
Conread position:
               
52-411
               

               
Cow position:
               
chr5:33560851-33560490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 100
               

               
Conread position:
               
53-416
               

               
Cow position:
               
chr5:28946186-28945827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
14, 169
               

               
Conread position:
               
54-319
               

               
Cow position:
               
chr5:27172095-27171845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
177, 22
               

               
Conread position:
               
54-418
               

               
Cow position:
               
chr5:12901800-12902175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 149
               

               
Conread position:
               
55-273
               

               
Cow position:
               
chr5:76119436-76119650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
28, 101
               

               
Conread position:
               
55-315
               

               
Cow position:
               
chr5:38076597-38076339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
29, 48
               

               
Conread position:
               
55-405
               

               
Cow position:
               
chr5:49474659-49474313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 45
               

               
Conread position:
               
56-268
               

               
Cow position:
               
chr5:57561404-57561620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
56-283
               

               
Cow position:
               
chr5:4927680-4927454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
45, 37
               

               
Conread position:
               
56-304
               

               
Cow position:
               
chr5:13717684-13717438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
28, 103
               

               
Conread position:
               
56-304
               

               
Cow position:
               
chr5:76366405-76366162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
70, 25
               

               
Conread position:
               
57-308
               

               
Cow position:
               
chr5:58446691-58446944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 108
               

               
Conread position:
               
57-314
               

               
Cow position:
               
chr5:7697893-7698143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 102
               

               
Conread position:
               
57-393
               

               
Cow position:
               
chr5:42670968-42670643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 45
               

               
Conread position:
               
57-393
               

               
Cow position:
               
chr5:60016055-60016393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
248, 105
               

               
Conread position:
               
57-393
               

               
Cow position:
               
chr5:71846036-71845696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
21, 118
               

               
Conread position:
               
58-218
               

               
Cow position:
               
chr5:55849854-55849698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
58-380
               

               
Cow position:
               
chr5:53946782-53947116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
11, 114
               

               
Conread position:
               
59-308
               

               
Cow position:
               
chr5:23678814-23678566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 109
               

               
Conread position:
               
59-373
               

               
Cow position:
               
chr5:60183691-60184008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 96
               

               
Conread position:
               
60-389
               

               
Cow position:
               
chr5:33833938-33834266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
173, 11
               

               
Conread position:
               
60-394
               

               
Cow position:
               
chr5:14921039-14920696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 71
               

               
Conread position:
               
62-291
               

               
Cow position:
               
chr5:56635793-56636015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
22, 69
               

               
Conread position:
               
62-406
               

               
Cow position:
               
chr5:34923056-34922720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
220, 13
               

               
Conread position:
               
62-416
               

               
Cow position:
               
chr5:43371305-43370936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
21, 45
               

               
Conread position:
               
63-263
               

               
Cow position:
               
chr5:64168346-64168147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
20, 103
               

               
Conread position:
               
63-304
               

               
Cow position:
               
chr5:40241937-40242176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
13, 47
               

               
Conread position:
               
63-315
               

               
Cow position:
               
chr5:41293974-41294225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
21, 103
               

               
Conread position:
               
63-408
               

               
Cow position:
               
chr5:31475575-31475929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
16, 99
               

               
Conread position:
               
64-376
               

               
Cow position:
               
chr5:35785081-35784782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
20, 42
               

               
Conread position:
               
66-224
               

               
Cow position:
               
chr5:56469929-56469770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
19, 98
               

               
Conread position:
               
66-315
               

               
Cow position:
               
chr5:54375610-54375358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
66-412
               

               
Cow position:
               
chr5:35229232-35228895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
160, 18
               

               
Conread position:
               
66-421
               

               
Cow position:
               
chr5:36039107-36038748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 49
               

               
Conread position:
               
67-254
               

               
Cow position:
               
chr5:56867922-56868093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
68-413
               

               
Cow position:
               
chr5:64555429-64555784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
14, 36
               

               
Conread position:
               
69-317
               

               
Cow position:
               
chr5:55019193-55019438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
20, 64
               

               
Conread position:
               
70-315
               

               
Cow position:
               
chr5:35125954-35126199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
163, 83
               

               
Conread position:
               
70-390
               

               
Cow position:
               
chr5:56548479-56548793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 89
               

               
Conread position:
               
70-409
               

               
Cow position:
               
chr5:36650450-36650799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
9, 91
               

               
Conread position:
               
71-335
               

               
Cow position:
               
chr5:62378693-62378943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
71-378
               

               
Cow position:
               
chr5:17555126-17554820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 14
               

               
Conread position:
               
72-207
               

               
Cow position:
               
chr5:29860250-29860386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
72-314
               

               
Cow position:
               
chr5:59873187-59872937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
90, 13
               

               
Conread position:
               
72-408
               

               
Cow position:
               
chr5:30232802-30233150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 211
               

               
Conread position:
               
77-273
               

               
Cow position:
               
chr5:34192810-34193008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
95, 29
               

               
Conread position:
               
77-382
               

               
Cow position:
               
chr5:66551994-66551673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 92
               

               
Conread position:
               
77-383
               

               
Cow position:
               
chr5:63234921-63234602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
20, 87
               

               
Conread position:
               
77-389
               

               
Cow position:
               
chr5:71015972-71015659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
142, 54
               

               
Conread position:
               
77-393
               

               
Cow position:
               
chr5:35976429-35976724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
286, 51
               

               
Conread position:
               
77-407
               

               
Cow position:
               
chr5:59384782-59384441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
83, 50
               

               
Conread position:
               
77-409
               

               
Cow position:
               
chr5:50575693-50576012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
156, 78
               

               
Conread position:
               
78-414
               

               
Cow position:
               
chr5:25366000-25366351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
82, 216
               

               
Conread position:
               
79-385
               

               
Cow position:
               
chr5:30805077-30805371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
15, 64
               

               
Conread position:
               
81-419
               

               
Cow position:
               
chr5:65140199-65140555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
39, 74
               

               
Conread position:
               
82-400
               

               
Cow position:
               
chr5:57527005-57526688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
152, 79
               

               
Conread position:
               
84-400
               

               
Cow position:
               
chr5:43402815-43403146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
86-321
               

               
Cow position:
               
chr5:56517020-56517255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
29, 10
               

               
Conread position:
               
87-243
               

               
Cow position:
               
chr5:34107154-34107307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
87-408
               

               
Cow position:
               
chr5:70270783-70271111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
78, 28
               

               
Conread position:
               
87-418
               

               
Cow position:
               
chr5:50713853-50713496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
73, 331
               

               
Conread position:
               
87-421
               

               
Cow position:
               
chr5:61771032-61771380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
129, 71
               

               
Conread position:
               
89-389
               

               
Cow position:
               
chr5:61914490-61914797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
132, 72
               

               
Conread position:
               
90-304
               

               
Cow position:
               
chr5:69636156-69636357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
144, 71
               

               
Conread position:
               
90-406
               

               
Cow position:
               
chr5:19752226-19752544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
61, 44
               

               
Conread position:
               
91-274
               

               
Cow position:
               
chr5:37893255-37893437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
143, 64
               

               
Conread position:
               
91-316
               

               
Cow position:
               
chr5:29912341-29912566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
140, 33
               

               
Conread position:
               
92-225
               

               
Cow position:
               
chr5:30293649-30293517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
92-402
               

               
Cow position:
               
chr5:57756108-57755795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
141, 116
               

               
Conread position:
               
99-411
               

               
Cow position:
               
chr5:43604073-43604386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
133, 51
               

               
Conread position:
               
100-413
               

               
Cow position:
               
chr5:6439102-6438778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
124, 44
               

               
Conread position:
               
101-377
               

               
Cow position:
               
chr5:57994936-57994666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
7, 66
               

               
Conread position:
               
102-298
               

               
Cow position:
               
chr5:26150488-26150294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 53
               

               
Conread position:
               
103-273
               

               
Cow position:
               
chr5:57640034-57639872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
73, 51
               

               
Conread position:
               
103-306
               

               
Cow position:
               
chr5:1461021-1461224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
131, 70
               

               
Conread position:
               
103-416
               

               
Cow position:
               
chr5:66530852-66531165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
27, 14
               

               
Conread position:
               
105-393
               

               
Cow position:
               
chr5:28035677-28035955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
128, 138
               

               
Conread position:
               
105-402
               

               
Cow position:
               
chr5:7012912-7012612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
107, 50
               

               
Conread position:
               
106-280
               

               
Cow position:
               
chr5:11965392-11965221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
125, 24
               

               
Conread position:
               
106-313
               

               
Cow position:
               
chr5:67212293-67212502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
47, 190
               

               
Conread position:
               
106-393
               

               
Cow position:
               
chr5:59627037-59626742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 179
               

               
Conread position:
               
106-411
               

               
Cow position:
               
chr5:41935720-41935409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
26, 58
               

               
Conread position:
               
106-415
               

               
Cow position:
               
chr5:20843463-20843146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
61, 242
               

               
Conread position:
               
108-308
               

               
Cow position:
               
chr5:45420195-45420000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
122, 53
               

               
Conread position:
               
109-315
               

               
Cow position:
               
chr5:63059009-63059205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
50, 102
               

               
Conread position:
               
110-412
               

               
Cow position:
               
chr5:63627584-63627294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
197, 32
               

               
Conread position:
               
111-393
               

               
Cow position:
               
chr5:61455787-61456077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 118
               

               
Conread position:
               
113-313
               

               
Cow position:
               
chr5:56339074-56338879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
118, 17
               

               
Conread position:
               
113-362
               

               
Cow position:
               
chr5:55796017-55795774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
119, 15
               

               
Conread position:
               
116-302
               

               
Cow position:
               
chr5:24136660-24136845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
115, 45
               

               
Conread position:
               
116-339
               

               
Cow position:
               
chr5:58356880-58356656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
57, 44
               

               
Conread position:
               
119-405
               

               
Cow position:
               
chr5:15470882-15471160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
58, 47
               

               
Conread position:
               
120-307
               

               
Cow position:
               
chr5:56211852-56212042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
120-412
               

               
Cow position:
               
chr5:67118369-67118655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 46
               

               
Conread position:
               
123-402
               

               
Cow position:
               
chr5:63192788-63192515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
237, 39
               

               
Conread position:
               
124-301
               

               
Cow position:
               
chr5:56153569-56153745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
109, 99
               

               
Conread position:
               
124-412
               

               
Cow position:
               
chr5:52001666-52001372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
110, 49
               

               
Conread position:
               
125-375
               

               
Cow position:
               
chr5:72006537-72006285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 187
               

               
Conread position:
               
128-353
               

               
Cow position:
               
chr5:17602242-17602018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
106, 31
               

               
Conread position:
               
128-394
               

               
Cow position:
               
chr5:49342090-49341804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 13
               

               
Conread position:
               
128-402
               

               
Cow position:
               
chr5:40237172-40237429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
103, 50
               

               
Conread position:
               
131-304
               

               
Cow position:
               
chr5:35982779-35982604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
131-304
               

               
Cow position:
               
chr5:52083298-52083476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
58, 30
               

               
Conread position:
               
131-394
               

               
Cow position:
               
chr5:20288302-20288027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 31
               

               
Conread position:
               
131-411
               

               
Cow position:
               
chr5:31052347-31052635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
96, 29
               

               
Conread position:
               
133-384
               

               
Cow position:
               
chr5:71724264-71724507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
77, 33
               

               
Conread position:
               
134-409
               

               
Cow position:
               
chr5:26549177-26548896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 41
               

               
Conread position:
               
136-401
               

               
Cow position:
               
chr5:8736323-8736039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
79, 30
               

               
Conread position:
               
136-414
               

               
Cow position:
               
chr5:57686774-57686500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 231
               

               
Conread position:
               
137-393
               

               
Cow position:
               
chr5:22795181-22795436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 24
               

               
Conread position:
               
139-314
               

               
Cow position:
               
chr5:41981340-41981511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
38, 27
               

               
Conread position:
               
139-379
               

               
Cow position:
               
chr5:61007035-61007280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
94, 26
               

               
Conread position:
               
142-327
               

               
Cow position:
               
chr5:57230367-57230180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
92, 19
               

               
Conread position:
               
147-405
               

               
Cow position:
               
chr5:45187142-45186876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
83, 126
               

               
Conread position:
               
148-325
               

               
Cow position:
               
chr5:5847868-5847693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
89, 30
               

               
Conread position:
               
151-307
               

               
Cow position:
               
chr5:43844684-43844527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
152-400
               

               
Cow position:
               
chr5:17104833-17105080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 81
               

               
Conread position:
               
161-315
               

               
Cow position:
               
chr5:9369281-9369127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
73, 17
               

               
Conread position:
               
161-409
               

               
Cow position:
               
chr5:6520001-6520253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
78, 12
               

               
Conread position:
               
162-314
               

               
Cow position:
               
chr5:9233999-9233845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
162-418
               

               
Cow position:
               
chr5:46541065-46540801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 73
               

               
Conread position:
               
162-421
               

               
Cow position:
               
chr5:39815500-39815244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
158, 34
               

               
Conread position:
               
166-298
               

               
Cow position:
               
chr5:9170588-9170456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
12, 89
               

               
Conread position:
               
166-385
               

               
Cow position:
               
chr5:60523727-60523949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
32, 69
               

               
Conread position:
               
167-395
               

               
Cow position:
               
chr5:51298718-51298484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 231
               

               
Conread position:
               
167-420
               

               
Cow position:
               
chr5:65679975-65679723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
137, 66
               

               
Conread position:
               
168-372
               

               
Cow position:
               
chr5:16939599-16939383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
168-393
               

               
Cow position:
               
chr5:30561928-30562158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
168-413
               

               
Cow position:
               
chr5:52852967-52853216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
65, 232
               

               
Conread position:
               
168-419
               

               
Cow position:
               
chr5:55965898-55965631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
168-421
               

               
Cow position:
               
chr5:56549360-56549627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
37, 46
               

               
Conread position:
               
169-315
               

               
Cow position:
               
chr5:55129340-55129487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
169-322
               

               
Cow position:
               
chr5:24069387-24069543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
28, 41
               

               
Conread position:
               
169-393
               

               
Cow position:
               
chr5:57489948-57489726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
148, 58
               

               
Conread position:
               
170-401
               

               
Cow position:
               
chr5:40241744-40241972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
194, 98
               

               
Conread position:
               
170-407
               

               
Cow position:
               
chr5:34347730-34347489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
63, 29
               

               
Conread position:
               
170-408
               

               
Cow position:
               
chr5:15364267-15364518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
64, 79
               

               
Conread position:
               
170-418
               

               
Cow position:
               
chr5:39035778-39036038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
64, 112
               

               
Conread position:
               
170-418
               

               
Cow position:
               
chr5:48867466-48867215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
67, 147
               

               
Conread position:
               
170-420
               

               
Cow position:
               
chr5:34915055-34914794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
171-314
               

               
Cow position:
               
chr5:45126649-45126795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
171-412
               

               
Cow position:
               
chr5:5760315-5760057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
172-317
               

               
Cow position:
               
chr5:21223324-21223471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
59, 24
               

               
Conread position:
               
172-384
               

               
Cow position:
               
chr5:72045674-72045456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
134, 61
               

               
Conread position:
               
172-407
               

               
Cow position:
               
chr5:17566438-17566203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
62, 39
               

               
Conread position:
               
175-321
               

               
Cow position:
               
chr5:26253170-26253024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
59, 129
               

               
Conread position:
               
175-400
               

               
Cow position:
               
chr5:59627103-59627329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
59, 143
               

               
Conread position:
               
175-411
               

               
Cow position:
               
chr5:12299914-12300158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
58, 173
               

               
Conread position:
               
176-356
               

               
Cow position:
               
chr5:17605130-17604946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
176-385
               

               
Cow position:
               
chr5:12654907-12654687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
55, 94
               

               
Conread position:
               
176-420
               

               
Cow position:
               
chr5:50824596-50824841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 126
               

               
Conread position:
               
178-299
               

               
Cow position:
               
chr5:12169762-12169641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
56, 31
               

               
Conread position:
               
180-413
               

               
Cow position:
               
chr5:2240981-2240739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
54, 42
               

               
Conread position:
               
181-389
               

               
Cow position:
               
chr5:60948142-60948358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
181-411
               

               
Cow position:
               
chr5:17828470-17828230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
52, 221
               

               
Conread position:
               
181-412
               

               
Cow position:
               
chr5:53935538-53935308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
52, 24
               

               
Conread position:
               
182-385
               

               
Cow position:
               
chr5:75228189-75227991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
52, 127
               

               
Conread position:
               
183-389
               

               
Cow position:
               
chr5:36142998-36143204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
50, 42
               

               
Conread position:
               
189-402
               

               
Cow position:
               
chr5:26147609-26147827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
45, 7
               

               
Conread position:
               
189-411
               

               
Cow position:
               
chr5:26167439-26167666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
45, 7
               

               
Conread position:
               
190-389
               

               
Cow position:
               
chr5:54312619-54312825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
43, 195
               

               
Conread position:
               
190-418
               

               
Cow position:
               
chr5:54750825-54751065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
194-408
               

               
Cow position:
               
chr5:35190132-35190351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 202
               

               
Conread position:
               
195-313
               

               
Cow position:
               
chr5:60596108-60595988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
195-405
               

               
Cow position:
               
chr5:37842256-37842037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
195-407
               

               
Cow position:
               
chr5:51289568-51289357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
164, 38
               

               
Conread position:
               
196-399
               

               
Cow position:
               
chr5:63173020-63172812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
5, 28
               

               
Conread position:
               
198-406
               

               
Cow position:
               
chr5:34288224-34288011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 35
               

               
Conread position:
               
199-304
               

               
Cow position:
               
chr5:38647667-38647773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
199-410
               

               
Cow position:
               
chr5:49821455-49821679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
200-315
               

               
Cow position:
               
chr5:29148919-29149032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
200-392
               

               
Cow position:
               
chr5:6086315-6086112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
200-401
               

               
Cow position:
               
chr5:16668725-16668926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
36, 170
               

               
Conread position:
               
200-402
               

               
Cow position:
               
chr5:36822915-36823109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
188, 27
               

               
Conread position:
               
200-406
               

               
Cow position:
               
chr5:61580310-61580523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
31, 23
               

               
Conread position:
               
200-417
               

               
Cow position:
               
chr5:57399224-57398997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
202-306
               

               
Cow position:
               
chr5:35833439-35833544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
203-407
               

               
Cow position:
               
chr5:15991608-15991401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
31, 90
               

               
Conread position:
               
206-389
               

               
Cow position:
               
chr5:62995991-62996185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
206-400
               

               
Cow position:
               
chr5:21003350-21003535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
83, 27
               

               
Conread position:
               
209-362
               

               
Cow position:
               
chr5:51125972-51125822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
27, 102
               

               
Conread position:
               
209-389
               

               
Cow position:
               
chr5:57497387-57497200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
209-400
               

               
Cow position:
               
chr5:12562723-12562523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
24, 83
               

               
Conread position:
               
209-403
               

               
Cow position:
               
chr5:16185415-16185618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
25, 192
               

               
Conread position:
               
209-411
               

               
Cow position:
               
chr5:19079289-19079489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
22, 64
               

               
Conread position:
               
210-407
               

               
Cow position:
               
chr5:54127328-54127530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
27, 187
               

               
Conread position:
               
210-418
               

               
Cow position:
               
chr5:35394395-35394182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
24, 107
               

               
Conread position:
               
210-421
               

               
Cow position:
               
chr5:3817649-3817427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
211-402
               

               
Cow position:
               
chr5:41736221-41736421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
211-412
               

               
Cow position:
               
chr5:43465564-43465775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
22, 80
               

               
Conread position:
               
212-400
               

               
Cow position:
               
chr5:70591594-70591777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
19, 105
               

               
Conread position:
               
214-407
               

               
Cow position:
               
chr5:6876926-6876720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
20, 32
               

               
Conread position:
               
214-407
               

               
Cow position:
               
chr5:54340811-54341011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
7, 12
               

               
Conread position:
               
214-409
               

               
Cow position:
               
chr5:62011725-62011932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
215-411
               

               
Cow position:
               
chr5:56327678-56327477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
219-393
               

               
Cow position:
               
chr5:37253477-37253653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
15, 6
               

               
Conread position:
               
220-403
               

               
Cow position:
               
chr5:29599498-29599314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
12, 97
               

               
Conread position:
               
221-392
               

               
Cow position:
               
chr5:4824197-4824382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
221-405
               

               
Cow position:
               
chr5:69356916-69357093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
133, 5
               

               
Conread position:
               
222-321
               

               
Cow position:
               
chr5:57785559-57785657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
101
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
12, 86
               

               
Conread position:
               
222-393
               

               
Cow position:
               
chr5:29895221-29895401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
223-408
               

               
Cow position:
               
chr5:60207759-60207950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
224-402
               

               
Cow position:
               
chr5:34918398-34918585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
225-400
               

               
Cow position:
               
chr5:52192376-52192202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
8, 138
               

               
Conread position:
               
225-403
               

               
Cow position:
               
chr5:49207274-49207090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
9, 174
               

               
Conread position:
               
225-403
               

               
Cow position:
               
chr5:70572424-70572599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
9, 24
               

               
Conread position:
               
225-410
               

               
Cow position:
               
chr5:60153828-60154015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
9, 61
               

               
Conread position:
               
227-393
               

               
Cow position:
               
chr5:40531483-40531301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
228-412
               

               
Cow position:
               
chr5:63300135-63300327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
229-412
               

               
Cow position:
               
chr5:25462146-25462328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
76, 92
               

               
Conread position:
               
230-393
               

               
Cow position:
               
chr5:75478856-75478688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
230-397
               

               
Cow position:
               
chr5:46479183-46479012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
230-407
               

               
Cow position:
               
chr5:52211628-52211449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
74, 164
               

               
Conread position:
               
230-408
               

               
Cow position:
               
chr5:52849144-52849327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
230-409
               

               
Cow position:
               
chr5:21721411-21721231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
85, 157
               

               
Conread position:
               
230-416
               

               
Cow position:
               
chr5:4981509-4981697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
76, 153
               

               
Conread position:
               
230-421
               

               
Cow position:
               
chr5:58401628-58401825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
231-410
               

               
Cow position:
               
chr5:57447606-57447417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
232-393
               

               
Cow position:
               
chr5:8136532-8136689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
132, 85
               

               
Conread position:
               
233-392
               

               
Cow position:
               
chr5:34787636-34787801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
233-406
               

               
Cow position:
               
chr5:5030505-5030679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
73, 15
               

               
Conread position:
               
233-412
               

               
Cow position:
               
chr5:41984417-41984586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
121, 73
               

               
Conread position:
               
233-414
               

               
Cow position:
               
chr5:67339945-67340131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
82, 168
               

               
Conread position:
               
233-421
               

               
Cow position:
               
chr5:47335091-47335274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
72, 7
               

               
Conread position:
               
235-410
               

               
Cow position:
               
chr5:22957474-22957650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
129, 71
               

               
Conread position:
               
235-413
               

               
Cow position:
               
chr5:32975822-32976014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
236-410
               

               
Cow position:
               
chr5:6245598-6245418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
242-393
               

               
Cow position:
               
chr5:31234783-31234934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
121, 73
               

               
Conread position:
               
244-393
               

               
Cow position:
               
chr5:64061092-64061243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
73, 85
               

               
Conread position:
               
244-418
               

               
Cow position:
               
chr5:19626651-19626829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
73, 154
               

               
Conread position:
               
248-421
               

               
Cow position:
               
chr5:17537596-17537420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
116, 73
               

               
Conread position:
               
250-420
               

               
Cow position:
               
chr5:4728153-4728325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
67, 82
               

               
Conread position:
               
254-386
               

               
Cow position:
               
chr5:31964647-31964771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
254-397
               

               
Cow position:
               
chr5:48104344-48104494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
257-408
               

               
Cow position:
               
chr5:74049910-74050068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
49, 142
               

               
Conread position:
               
257-409
               

               
Cow position:
               
chr5:14000731-14000884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
60, 55
               

               
Conread position:
               
273-397
               

               
Cow position:
               
chr5:63940345-63940220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
33, 7
               

               
Conread position:
               
273-404
               

               
Cow position:
               
chr5:20736775-20736635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
42, 0
               
Show alignments to all cow chromosomes.