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Cow genome map

           
Conread name:
           
rcmu38_p21.y1
        

               
Conread position:
               
108-310
               

               
Cow position:
               
chr17:26554561-26554759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
12, 36
               

               
Conread position:
               
117-315
               

               
Cow position:
               
chr17:26183392-26183595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
120, 21
               

               
Conread position:
               
117-333
               

               
Cow position:
               
chr17:6318822-6318602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
7, 196
               

               
Conread position:
               
124-240
               

               
Cow position:
               
chr17:21206449-21206333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
126-310
               

               
Cow position:
               
chr17:11080797-11080601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
128-306
               

               
Cow position:
               
chr17:15103681-15103502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
153, 19
               

               
Conread position:
               
128-317
               

               
Cow position:
               
chr17:24030176-24029989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
11, 150
               

               
Conread position:
               
128-324
               

               
Cow position:
               
chr17:24587682-24587880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 183
               

               
Conread position:
               
128-328
               

               
Cow position:
               
chr17:1282202-1282003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
11, 139
               

               
Conread position:
               
128-330
               

               
Cow position:
               
chr17:31985882-31985685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
17, 11
               

               
Conread position:
               
128-331
               

               
Cow position:
               
chr17:19544175-19543972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
13, 60
               

               
Conread position:
               
128-331
               

               
Cow position:
               
chr17:31736446-31736235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
106, 10
               

               
Conread position:
               
130-293
               

               
Cow position:
               
chr17:9697622-9697456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
130-300
               

               
Cow position:
               
chr17:10414558-10414727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
148, 105
               

               
Conread position:
               
131-310
               

               
Cow position:
               
chr17:9854036-9854226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
133-224
               

               
Cow position:
               
chr17:12591237-12591328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
92
               

               
Alignm identity:
               
78
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
133-226
               

               
Cow position:
               
chr17:21758078-21757985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
94
               

               
Alignm identity:
               
79
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
133-240
               

               
Cow position:
               
chr17:29157482-29157586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
133-242
               

               
Cow position:
               
chr17:32273624-32273515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
133-270
               

               
Cow position:
               
chr17:3178397-3178256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
91, 29
               

               
Conread position:
               
133-291
               

               
Cow position:
               
chr17:45296474-45296631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
145, 60
               

               
Conread position:
               
133-302
               

               
Cow position:
               
chr17:5693592-5693420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
133-302
               

               
Cow position:
               
chr17:5767970-5768130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
133-306
               

               
Cow position:
               
chr17:15883734-15883915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
77, 72
               

               
Conread position:
               
133-306
               

               
Cow position:
               
chr17:21466200-21466018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
133-309
               

               
Cow position:
               
chr17:15728536-15728712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
74, 108
               

               
Conread position:
               
133-309
               

               
Cow position:
               
chr17:18934323-18934499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
147, 17
               

               
Conread position:
               
133-310
               

               
Cow position:
               
chr17:22051527-22051346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
133-312
               

               
Cow position:
               
chr17:34791002-34790817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
133-315
               

               
Cow position:
               
chr17:26818395-26818223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
143, 53
               

               
Conread position:
               
133-315
               

               
Cow position:
               
chr17:35043861-35043686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
133-324
               

               
Cow position:
               
chr17:17044269-17044078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
147, 72
               

               
Conread position:
               
133-327
               

               
Cow position:
               
chr17:30501752-30501552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
133-333
               

               
Cow position:
               
chr17:24987269-24987468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
42, 32
               

               
Conread position:
               
133-335
               

               
Cow position:
               
chr17:11912440-11912236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
145, 93
               

               
Conread position:
               
134-231
               

               
Cow position:
               
chr17:26765087-26765184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
98
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
134-243
               

               
Cow position:
               
chr17:9713278-9713169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
134-243
               

               
Cow position:
               
chr17:15340688-15340579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
134-243
               

               
Cow position:
               
chr17:29076019-29075914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
134-263
               

               
Cow position:
               
chr17:24789885-24790022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
134-269
               

               
Cow position:
               
chr17:18109020-18108886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
90, 17
               

               
Conread position:
               
134-275
               

               
Cow position:
               
chr17:25348432-25348573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
134-293
               

               
Cow position:
               
chr17:5423005-5422851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
144, 99
               

               
Conread position:
               
134-294
               

               
Cow position:
               
chr17:24767224-24767060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
134-295
               

               
Cow position:
               
chr17:5027396-5027235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
145, 26
               

               
Conread position:
               
134-300
               

               
Cow position:
               
chr17:1063241-1063403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
162, 17
               

               
Conread position:
               
134-300
               

               
Cow position:
               
chr17:5000524-5000367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
60, 67
               

               
Conread position:
               
134-302
               

               
Cow position:
               
chr17:946421-946592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
134-302
               

               
Cow position:
               
chr17:7711501-7711672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
102, 86
               

               
Conread position:
               
134-302
               

               
Cow position:
               
chr17:12510910-12510749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
142, 28
               

               
Conread position:
               
134-302
               

               
Cow position:
               
chr17:26448606-26448779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
75, 66
               

               
Conread position:
               
134-302
               

               
Cow position:
               
chr17:31037313-31037141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
104, 156
               

               
Conread position:
               
134-303
               

               
Cow position:
               
chr17:21114890-21114718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
134-306
               

               
Cow position:
               
chr17:21676954-21677131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
134-306
               

               
Cow position:
               
chr17:24824306-24824486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
134-306
               

               
Cow position:
               
chr17:33933681-33933508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
44, 82
               

               
Conread position:
               
134-306
               

               
Cow position:
               
chr17:43315224-43315050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
88, 37
               

               
Conread position:
               
134-307
               

               
Cow position:
               
chr17:21325396-21325585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
134-309
               

               
Cow position:
               
chr17:29995372-29995193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
85, 169
               

               
Conread position:
               
134-310
               

               
Cow position:
               
chr17:1634428-1634250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
144, 169
               

               
Conread position:
               
134-310
               

               
Cow position:
               
chr17:4105930-4105748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
92, 154
               

               
Conread position:
               
134-310
               

               
Cow position:
               
chr17:4121666-4121483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
92, 155
               

               
Conread position:
               
134-310
               

               
Cow position:
               
chr17:20157671-20157852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
19, 13
               

               
Conread position:
               
134-310
               

               
Cow position:
               
chr17:30713409-30713590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
99, 54
               

               
Conread position:
               
134-310
               

               
Cow position:
               
chr17:32989540-32989718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
134-310
               

               
Cow position:
               
chr17:32993560-32993382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
134-311
               

               
Cow position:
               
chr17:7810691-7810502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
134-312
               

               
Cow position:
               
chr17:8815256-8815433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
147, 114
               

               
Conread position:
               
134-312
               

               
Cow position:
               
chr17:9824733-9824914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 86
               

               
Conread position:
               
134-312
               

               
Cow position:
               
chr17:21003762-21003585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
137, 17
               

               
Conread position:
               
134-312
               

               
Cow position:
               
chr17:42150455-42150634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
142, 91
               

               
Conread position:
               
134-314
               

               
Cow position:
               
chr17:10016343-10016525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 52
               

               
Conread position:
               
134-314
               

               
Cow position:
               
chr17:29084238-29084416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
170, 97
               

               
Conread position:
               
134-314
               

               
Cow position:
               
chr17:32333027-32332844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
134-316
               

               
Cow position:
               
chr17:25514059-25513868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
134-317
               

               
Cow position:
               
chr17:22127986-22128174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
96, 167
               

               
Conread position:
               
134-318
               

               
Cow position:
               
chr17:33164752-33164566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
39, 18
               

               
Conread position:
               
134-321
               

               
Cow position:
               
chr17:39606494-39606678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
177, 103
               

               
Conread position:
               
134-324
               

               
Cow position:
               
chr17:33288593-33288401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
146, 177
               

               
Conread position:
               
134-325
               

               
Cow position:
               
chr17:15102830-15102632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
91, 182
               

               
Conread position:
               
134-325
               

               
Cow position:
               
chr17:31563624-31563423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
94, 23
               

               
Conread position:
               
134-326
               

               
Cow position:
               
chr17:8948901-8948705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
134-327
               

               
Cow position:
               
chr17:40673434-40673637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
134-328
               

               
Cow position:
               
chr17:32419052-32418855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
134-329
               

               
Cow position:
               
chr17:32138360-32138153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
134-330
               

               
Cow position:
               
chr17:20072035-20071839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
92, 124
               

               
Conread position:
               
134-331
               

               
Cow position:
               
chr17:21718933-21718732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
134-333
               

               
Cow position:
               
chr17:21039621-21039820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 181
               

               
Conread position:
               
134-334
               

               
Cow position:
               
chr17:3577603-3577794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
144, 69
               

               
Conread position:
               
134-335
               

               
Cow position:
               
chr17:33155091-33154889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
142, 92
               

               
Conread position:
               
135-306
               

               
Cow position:
               
chr17:9932235-9932071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
144, 86
               

               
Conread position:
               
135-306
               

               
Cow position:
               
chr17:20022449-20022274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
135-316
               

               
Cow position:
               
chr17:25128288-25128103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
135-333
               

               
Cow position:
               
chr17:12325700-12325504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
140, 100
               

               
Conread position:
               
136-300
               

               
Cow position:
               
chr17:27303903-27303746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
136-307
               

               
Cow position:
               
chr17:5038985-5038814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
140, 90
               

               
Conread position:
               
136-307
               

               
Cow position:
               
chr17:20359178-20359354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
87, 169
               

               
Conread position:
               
136-310
               

               
Cow position:
               
chr17:11832049-11831874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
140, 99
               

               
Conread position:
               
136-328
               

               
Cow position:
               
chr17:5730982-5731181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
71, 59
               

               
Conread position:
               
137-310
               

               
Cow position:
               
chr17:12946282-12946115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
72, 24
               

               
Conread position:
               
138-228
               

               
Cow position:
               
chr17:11478837-11478928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
92
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
138-236
               

               
Cow position:
               
chr17:22056960-22056862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
99
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
138-243
               

               
Cow position:
               
chr17:4286114-4286216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
138-279
               

               
Cow position:
               
chr17:12959174-12959312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
137, 97
               

               
Conread position:
               
138-287
               

               
Cow position:
               
chr17:40852038-40852189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
38, 99
               

               
Conread position:
               
138-291
               

               
Cow position:
               
chr17:31754707-31754547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
92, 19
               

               
Conread position:
               
138-293
               

               
Cow position:
               
chr17:12536397-12536247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
140, 83
               

               
Conread position:
               
138-293
               

               
Cow position:
               
chr17:23101151-23100995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
138, 109
               

               
Conread position:
               
138-295
               

               
Cow position:
               
chr17:28284960-28284807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
87, 47
               

               
Conread position:
               
138-300
               

               
Cow position:
               
chr17:5372459-5372298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
143, 95
               

               
Conread position:
               
138-300
               

               
Cow position:
               
chr17:11362242-11362410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
70, 62
               

               
Conread position:
               
138-306
               

               
Cow position:
               
chr17:12200861-12201032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
42, 82
               

               
Conread position:
               
138-306
               

               
Cow position:
               
chr17:13414300-13414125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
138-306
               

               
Cow position:
               
chr17:24750979-24751152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
25, 56
               

               
Conread position:
               
138-306
               

               
Cow position:
               
chr17:24974009-24974183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
38, 95
               

               
Conread position:
               
138-307
               

               
Cow position:
               
chr17:25612158-25612328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
143, 97
               

               
Conread position:
               
138-307
               

               
Cow position:
               
chr17:33288411-33288250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
138, 62
               

               
Conread position:
               
138-308
               

               
Cow position:
               
chr17:11664517-11664335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
138-309
               

               
Cow position:
               
chr17:26575160-26574978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
138-309
               

               
Cow position:
               
chr17:37340969-37340788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
138-310
               

               
Cow position:
               
chr17:1025758-1025590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
27, 98
               

               
Conread position:
               
138-310
               

               
Cow position:
               
chr17:17035017-17035190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
138, 114
               

               
Conread position:
               
138-310
               

               
Cow position:
               
chr17:29245511-29245677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
140, 99
               

               
Conread position:
               
138-310
               

               
Cow position:
               
chr17:40276808-40276980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
96, 144
               

               
Conread position:
               
138-310
               

               
Cow position:
               
chr17:40639015-40639191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
90, 52
               

               
Conread position:
               
138-310
               

               
Cow position:
               
chr17:44234318-44234490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
140, 88
               

               
Conread position:
               
138-311
               

               
Cow position:
               
chr17:25800813-25800637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
137, 56
               

               
Conread position:
               
138-314
               

               
Cow position:
               
chr17:24004440-24004623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
81, 55
               

               
Conread position:
               
138-316
               

               
Cow position:
               
chr17:12019477-12019312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
143, 14
               

               
Conread position:
               
138-316
               

               
Cow position:
               
chr17:25511313-25511493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
140, 27
               

               
Conread position:
               
138-319
               

               
Cow position:
               
chr17:12963539-12963361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
138, 60
               

               
Conread position:
               
138-323
               

               
Cow position:
               
chr17:18766926-18766733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
90, 139
               

               
Conread position:
               
138-324
               

               
Cow position:
               
chr17:20905031-20904847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
141, 51
               

               
Conread position:
               
138-324
               

               
Cow position:
               
chr17:30728572-30728762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
89, 178
               

               
Conread position:
               
138-325
               

               
Cow position:
               
chr17:36864698-36864886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
140, 87
               

               
Conread position:
               
138-327
               

               
Cow position:
               
chr17:21181519-21181717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
71, 62
               

               
Conread position:
               
138-327
               

               
Cow position:
               
chr17:32471713-32471529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
140, 99
               

               
Conread position:
               
138-328
               

               
Cow position:
               
chr17:20881741-20881556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
138-329
               

               
Cow position:
               
chr17:3153506-3153304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
88, 39
               

               
Conread position:
               
138-329
               

               
Cow position:
               
chr17:14050139-14049945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
99, 67
               

               
Conread position:
               
138-330
               

               
Cow position:
               
chr17:10023123-10023321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
70, 57
               

               
Conread position:
               
138-330
               

               
Cow position:
               
chr17:25901268-25901473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
138-332
               

               
Cow position:
               
chr17:21236590-21236791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
138-332
               

               
Cow position:
               
chr17:24895141-24895343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
138-333
               

               
Cow position:
               
chr17:2729845-2729650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
88, 35
               

               
Conread position:
               
138-333
               

               
Cow position:
               
chr17:17059491-17059686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
143, 107
               

               
Conread position:
               
138-333
               

               
Cow position:
               
chr17:32027384-32027179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
138-335
               

               
Cow position:
               
chr17:3320216-3320408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
164, 76
               

               
Conread position:
               
138-335
               

               
Cow position:
               
chr17:5280587-5280381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
138-335
               

               
Cow position:
               
chr17:22081448-22081257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
143, 46
               

               
Conread position:
               
139-300
               

               
Cow position:
               
chr17:43859866-43860026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
142, 61
               

               
Conread position:
               
139-304
               

               
Cow position:
               
chr17:30737512-30737688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
102, 171
               

               
Conread position:
               
139-306
               

               
Cow position:
               
chr17:26225096-26225268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
139-307
               

               
Cow position:
               
chr17:41429518-41429350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
139, 156
               

               
Conread position:
               
139-310
               

               
Cow position:
               
chr17:35573821-35573991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
119, 89
               

               
Conread position:
               
139-311
               

               
Cow position:
               
chr17:15664746-15664921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
89, 66
               

               
Conread position:
               
140-238
               

               
Cow position:
               
chr17:25490991-25490893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
99
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
140-242
               

               
Cow position:
               
chr17:21268367-21268470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
31, 43
               

               
Conread position:
               
140-243
               

               
Cow position:
               
chr17:5743221-5743118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
140-250
               

               
Cow position:
               
chr17:3097586-3097476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
140-259
               

               
Cow position:
               
chr17:968954-969070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
140-279
               

               
Cow position:
               
chr17:6329185-6329322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
140-279
               

               
Cow position:
               
chr17:18473233-18473373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
79, 65
               

               
Conread position:
               
140-279
               

               
Cow position:
               
chr17:24757597-24757733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
99, 20
               

               
Conread position:
               
140-292
               

               
Cow position:
               
chr17:8137475-8137628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
138, 95
               

               
Conread position:
               
140-292
               

               
Cow position:
               
chr17:24862528-24862681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
137, 95
               

               
Conread position:
               
140-294
               

               
Cow position:
               
chr17:25097525-25097672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
140-294
               

               
Cow position:
               
chr17:26789489-26789643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
136, 101
               

               
Conread position:
               
140-298
               

               
Cow position:
               
chr17:24163106-24163266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
139, 121
               

               
Conread position:
               
140-300
               

               
Cow position:
               
chr17:18776117-18775955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
68, 96
               

               
Conread position:
               
140-303
               

               
Cow position:
               
chr17:1466347-1466179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
99, 154
               

               
Conread position:
               
140-304
               

               
Cow position:
               
chr17:43957730-43957899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
75, 65
               

               
Conread position:
               
140-306
               

               
Cow position:
               
chr17:3364661-3364829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
35, 15
               

               
Conread position:
               
140-306
               

               
Cow position:
               
chr17:6761778-6761614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
138, 58
               

               
Conread position:
               
140-306
               

               
Cow position:
               
chr17:7803105-7802932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
140-306
               

               
Cow position:
               
chr17:17222410-17222583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
80, 166
               

               
Conread position:
               
140-306
               

               
Cow position:
               
chr17:19471701-19471533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
138, 88
               

               
Conread position:
               
140-306
               

               
Cow position:
               
chr17:20848592-20848768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
140-306
               

               
Cow position:
               
chr17:25122174-25122008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
136, 105
               

               
Conread position:
               
140-306
               

               
Cow position:
               
chr17:25126420-25126584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
138, 78
               

               
Conread position:
               
140-306
               

               
Cow position:
               
chr17:39963947-39964118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
90, 64
               

               
Conread position:
               
140-307
               

               
Cow position:
               
chr17:10222140-10221966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
140-309
               

               
Cow position:
               
chr17:21363451-21363626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
140-309
               

               
Cow position:
               
chr17:24883501-24883327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
140-310
               

               
Cow position:
               
chr17:908810-908984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
140-310
               

               
Cow position:
               
chr17:2275540-2275707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
126, 95
               

               
Conread position:
               
140-310
               

               
Cow position:
               
chr17:5288236-5288410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
68, 52
               

               
Conread position:
               
140-310
               

               
Cow position:
               
chr17:10825550-10825720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
126, 95
               

               
Conread position:
               
140-310
               

               
Cow position:
               
chr17:12306327-12306156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
138, 100
               

               
Conread position:
               
140-310
               

               
Cow position:
               
chr17:14025841-14025663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
140-310
               

               
Cow position:
               
chr17:17410363-17410544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
140-310
               

               
Cow position:
               
chr17:25584311-25584490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
140-310
               

               
Cow position:
               
chr17:27292387-27292210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
140-310
               

               
Cow position:
               
chr17:29292310-29292145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
140, 31
               

               
Conread position:
               
140-310
               

               
Cow position:
               
chr17:36275403-36275581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
140-310
               

               
Cow position:
               
chr17:40355328-40355505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
140-310
               

               
Cow position:
               
chr17:43323475-43323298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
69, 65
               

               
Conread position:
               
140-311
               

               
Cow position:
               
chr17:8723364-8723196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
95, 124
               

               
Conread position:
               
140-311
               

               
Cow position:
               
chr17:20913180-20913353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
69, 37
               

               
Conread position:
               
140-312
               

               
Cow position:
               
chr17:28982251-28982424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
95, 25
               

               
Conread position:
               
140-313
               

               
Cow position:
               
chr17:6423834-6424001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
138, 68
               

               
Conread position:
               
140-313
               

               
Cow position:
               
chr17:15355001-15355182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
140-313
               

               
Cow position:
               
chr17:19898960-19899146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
27, 182
               

               
Conread position:
               
140-313
               

               
Cow position:
               
chr17:25342671-25342494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
84, 173
               

               
Conread position:
               
140-315
               

               
Cow position:
               
chr17:18201827-18202010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
77, 65
               

               
Conread position:
               
140-317
               

               
Cow position:
               
chr17:11056090-11055914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
138, 36
               

               
Conread position:
               
140-317
               

               
Cow position:
               
chr17:20884593-20884778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
62, 75
               

               
Conread position:
               
140-317
               

               
Cow position:
               
chr17:25473210-25473030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
140-321
               

               
Cow position:
               
chr17:20836161-20836345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
85, 15
               

               
Conread position:
               
140-322
               

               
Cow position:
               
chr17:10458862-10458681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
116, 128
               

               
Conread position:
               
140-323
               

               
Cow position:
               
chr17:7571173-7571361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
70, 60
               

               
Conread position:
               
140-323
               

               
Cow position:
               
chr17:17180113-17180304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
140-324
               

               
Cow position:
               
chr17:11921095-11920903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
74, 65
               

               
Conread position:
               
140-324
               

               
Cow position:
               
chr17:25875465-25875654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
69, 60
               

               
Conread position:
               
140-325
               

               
Cow position:
               
chr17:24841765-24841955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
90, 174
               

               
Conread position:
               
140-325
               

               
Cow position:
               
chr17:25467052-25467246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
69, 65
               

               
Conread position:
               
140-327
               

               
Cow position:
               
chr17:14003895-14004085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
126, 93
               

               
Conread position:
               
140-327
               

               
Cow position:
               
chr17:26637787-26637594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
140-328
               

               
Cow position:
               
chr17:20932401-20932588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
91, 119
               

               
Conread position:
               
140-328
               

               
Cow position:
               
chr17:21744001-21744198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
80, 113
               

               
Conread position:
               
140-328
               

               
Cow position:
               
chr17:37816123-37815928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
85, 60
               

               
Conread position:
               
140-329
               

               
Cow position:
               
chr17:10508364-10508174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
95, 77
               

               
Conread position:
               
140-329
               

               
Cow position:
               
chr17:18720377-18720189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
140, 95
               

               
Conread position:
               
140-329
               

               
Cow position:
               
chr17:32220816-32220621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
36, 67
               

               
Conread position:
               
140-329
               

               
Cow position:
               
chr17:40741722-40741916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
87, 58
               

               
Conread position:
               
140-330
               

               
Cow position:
               
chr17:21973060-21972861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
140-331
               

               
Cow position:
               
chr17:6787006-6787205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
140-331
               

               
Cow position:
               
chr17:9965957-9965760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
69, 60
               

               
Conread position:
               
140-331
               

               
Cow position:
               
chr17:11839792-11839990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
140-332
               

               
Cow position:
               
chr17:3387787-3387987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
89, 65
               

               
Conread position:
               
140-332
               

               
Cow position:
               
chr17:9509926-9509729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
99, 174
               

               
Conread position:
               
140-332
               

               
Cow position:
               
chr17:21489555-21489368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
89, 122
               

               
Conread position:
               
140-332
               

               
Cow position:
               
chr17:36468121-36467925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
73, 65
               

               
Conread position:
               
140-333
               

               
Cow position:
               
chr17:5011908-5012111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
140-333
               

               
Cow position:
               
chr17:20234281-20234463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
138, 95
               

               
Conread position:
               
140-333
               

               
Cow position:
               
chr17:21788589-21788390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
120, 81
               

               
Conread position:
               
140-334
               

               
Cow position:
               
chr17:18641514-18641703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
67, 133
               

               
Conread position:
               
140-335
               

               
Cow position:
               
chr17:5344687-5344888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
140-335
               

               
Cow position:
               
chr17:7959251-7959447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
138, 44
               

               
Conread position:
               
140-335
               

               
Cow position:
               
chr17:15684580-15684773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
163, 85
               

               
Conread position:
               
140-335
               

               
Cow position:
               
chr17:20306396-20306604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
88, 20
               

               
Conread position:
               
140-335
               

               
Cow position:
               
chr17:27795724-27795923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
69, 53
               

               
Conread position:
               
140-335
               

               
Cow position:
               
chr17:35149460-35149258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
69, 65
               

               
Conread position:
               
141-253
               

               
Cow position:
               
chr17:5719942-5720054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
141-294
               

               
Cow position:
               
chr17:6004869-6005028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
69, 59
               

               
Conread position:
               
141-294
               

               
Cow position:
               
chr17:24773750-24773904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
137, 100
               

               
Conread position:
               
141-294
               

               
Cow position:
               
chr17:25095552-25095714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
141-302
               

               
Cow position:
               
chr17:20992971-20992802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
141-302
               

               
Cow position:
               
chr17:31856744-31856908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
82, 61
               

               
Conread position:
               
141-306
               

               
Cow position:
               
chr17:13922554-13922722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
35, 85
               

               
Conread position:
               
141-306
               

               
Cow position:
               
chr17:24077474-24077627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
141-309
               

               
Cow position:
               
chr17:21806381-21806206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
141-310
               

               
Cow position:
               
chr17:35457745-35457574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
14, 74
               

               
Conread position:
               
141-311
               

               
Cow position:
               
chr17:40771903-40772074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
87, 41
               

               
Conread position:
               
141-314
               

               
Cow position:
               
chr17:8663575-8663755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
78, 53
               

               
Conread position:
               
141-317
               

               
Cow position:
               
chr17:34948705-34948888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
141-322
               

               
Cow position:
               
chr17:26072690-26072500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
141-322
               

               
Cow position:
               
chr17:33653619-33653438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
35, 93
               

               
Conread position:
               
141-325
               

               
Cow position:
               
chr17:7554193-7554005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
125, 94
               

               
Conread position:
               
141-325
               

               
Cow position:
               
chr17:11618655-11618849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
141-327
               

               
Cow position:
               
chr17:25189356-25189548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
141-327
               

               
Cow position:
               
chr17:26000188-26000380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
81, 179
               

               
Conread position:
               
141-331
               

               
Cow position:
               
chr17:32978862-32978677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
138, 79
               

               
Conread position:
               
141-334
               

               
Cow position:
               
chr17:24786949-24786757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
139, 31
               

               
Conread position:
               
141-335
               

               
Cow position:
               
chr17:25702672-25702878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
141-335
               

               
Cow position:
               
chr17:32349138-32349332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
139, 86
               

               
Conread position:
               
142-277
               

               
Cow position:
               
chr17:2810704-2810842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
88, 116
               

               
Conread position:
               
142-304
               

               
Cow position:
               
chr17:30108511-30108668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
136, 63
               

               
Conread position:
               
142-306
               

               
Cow position:
               
chr17:24898272-24898445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
142-306
               

               
Cow position:
               
chr17:33321898-33321727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
142-307
               

               
Cow position:
               
chr17:5044260-5044101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
142-307
               

               
Cow position:
               
chr17:12887431-12887593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
142-309
               

               
Cow position:
               
chr17:30977092-30977259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
133, 93
               

               
Conread position:
               
142-310
               

               
Cow position:
               
chr17:11215820-11215649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
96, 25
               

               
Conread position:
               
142-311
               

               
Cow position:
               
chr17:13297452-13297630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
87, 62
               

               
Conread position:
               
142-317
               

               
Cow position:
               
chr17:20270023-20270204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
77, 160
               

               
Conread position:
               
142-323
               

               
Cow position:
               
chr17:11985806-11985631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
49, 95
               

               
Conread position:
               
142-323
               

               
Cow position:
               
chr17:25616322-25616502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
55, 7
               

               
Conread position:
               
142-324
               

               
Cow position:
               
chr17:21738802-21738605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
142-326
               

               
Cow position:
               
chr17:6767189-6766996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
67, 63
               

               
Conread position:
               
142-330
               

               
Cow position:
               
chr17:21959616-21959417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
142-331
               

               
Cow position:
               
chr17:20929313-20929509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
142-332
               

               
Cow position:
               
chr17:27922645-27922459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
33, 14
               

               
Conread position:
               
142-333
               

               
Cow position:
               
chr17:28468195-28468396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
84, 11
               

               
Conread position:
               
142-334
               

               
Cow position:
               
chr17:1463259-1463057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
142-335
               

               
Cow position:
               
chr17:26849701-26849499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
11, 66
               

               
Conread position:
               
143-246
               

               
Cow position:
               
chr17:10510399-10510294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
143-279
               

               
Cow position:
               
chr17:38483724-38483586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
143-306
               

               
Cow position:
               
chr17:1562715-1562551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
7, 88
               

               
Conread position:
               
143-307
               

               
Cow position:
               
chr17:3467825-3467992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
143-309
               

               
Cow position:
               
chr17:36791200-36791367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
96, 6
               

               
Conread position:
               
143-310
               

               
Cow position:
               
chr17:5048003-5048174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
143-310
               

               
Cow position:
               
chr17:9940768-9940937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
88, 136
               

               
Conread position:
               
143-310
               

               
Cow position:
               
chr17:12289336-12289166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
66, 62
               

               
Conread position:
               
143-312
               

               
Cow position:
               
chr17:29356167-29355997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
135, 98
               

               
Conread position:
               
143-328
               

               
Cow position:
               
chr17:9260539-9260352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
93, 171
               

               
Conread position:
               
143-329
               

               
Cow position:
               
chr17:42259288-42259462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
143-331
               

               
Cow position:
               
chr17:18588157-18588334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
143-333
               

               
Cow position:
               
chr17:4213816-4214004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
143-335
               

               
Cow position:
               
chr17:21619706-21619524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
12, 85
               

               
Conread position:
               
144-306
               

               
Cow position:
               
chr17:33275676-33275519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
132, 76
               

               
Conread position:
               
144-314
               

               
Cow position:
               
chr17:11397740-11397915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
82, 33
               

               
Conread position:
               
145-302
               

               
Cow position:
               
chr17:24111527-24111367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
146-301
               

               
Cow position:
               
chr17:27440249-27440412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
146-302
               

               
Cow position:
               
chr17:39759195-39759344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
135, 7
               

               
Conread position:
               
146-307
               

               
Cow position:
               
chr17:30359534-30359694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
153, 74
               

               
Conread position:
               
146-324
               

               
Cow position:
               
chr17:9078145-9077951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
147-241
               

               
Cow position:
               
chr17:9911834-9911928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
95
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
147-265
               

               
Cow position:
               
chr17:18495443-18495323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
147-294
               

               
Cow position:
               
chr17:35311607-35311747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
131, 30
               

               
Conread position:
               
147-294
               

               
Cow position:
               
chr17:38736515-38736659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
131, 78
               

               
Conread position:
               
147-306
               

               
Cow position:
               
chr17:4817604-4817770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
147-308
               

               
Cow position:
               
chr17:30513931-30513769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
147-309
               

               
Cow position:
               
chr17:11101729-11101575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
134, 16
               

               
Conread position:
               
147-309
               

               
Cow position:
               
chr17:27429642-27429799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
129, 88
               

               
Conread position:
               
147-310
               

               
Cow position:
               
chr17:9770580-9770751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
147-311
               

               
Cow position:
               
chr17:40331841-40332024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
147-317
               

               
Cow position:
               
chr17:15333602-15333433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
129, 74
               

               
Conread position:
               
147-325
               

               
Cow position:
               
chr17:41380434-41380257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
74, 23
               

               
Conread position:
               
147-326
               

               
Cow position:
               
chr17:33793240-33793412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
147-328
               

               
Cow position:
               
chr17:41009349-41009532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
61, 51
               

               
Conread position:
               
147-330
               

               
Cow position:
               
chr17:43717261-43717074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
147-331
               

               
Cow position:
               
chr17:17782132-17782317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
148-305
               

               
Cow position:
               
chr17:18438361-18438205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
143, 57
               

               
Conread position:
               
148-314
               

               
Cow position:
               
chr17:3388901-3389082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
148-331
               

               
Cow position:
               
chr17:18404492-18404309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
84, 34
               

               
Conread position:
               
150-306
               

               
Cow position:
               
chr17:36814441-36814605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
150-325
               

               
Cow position:
               
chr17:31559649-31559828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
60, 54
               

               
Conread position:
               
150-334
               

               
Cow position:
               
chr17:15303896-15303705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
24, 34
               

               
Conread position:
               
150-335
               

               
Cow position:
               
chr17:17682831-17682641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
71, 63
               

               
Conread position:
               
150-335
               

               
Cow position:
               
chr17:43971073-43970890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
143, 36
               

               
Conread position:
               
153-335
               

               
Cow position:
               
chr17:27606600-27606782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
123, 75
               

               
Conread position:
               
155-291
               

               
Cow position:
               
chr17:34806582-34806438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
155-329
               

               
Cow position:
               
chr17:42419794-42419965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
82, 123
               

               
Conread position:
               
156-306
               

               
Cow position:
               
chr17:7864910-7865065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
156-306
               

               
Cow position:
               
chr17:21678072-21677921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
101, 79
               

               
Conread position:
               
156-306
               

               
Cow position:
               
chr17:24116696-24116854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
76, 11
               

               
Conread position:
               
156-314
               

               
Cow position:
               
chr17:25352283-25352454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
156-327
               

               
Cow position:
               
chr17:14668588-14668763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
70, 155
               

               
Conread position:
               
156-334
               

               
Cow position:
               
chr17:13940236-13940049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
157-295
               

               
Cow position:
               
chr17:17822177-17822316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
123, 40
               

               
Conread position:
               
157-310
               

               
Cow position:
               
chr17:35051701-35051864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
157-316
               

               
Cow position:
               
chr17:42675940-42675790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
119, 48
               

               
Conread position:
               
158-305
               

               
Cow position:
               
chr17:32008463-32008314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
66, 33
               

               
Conread position:
               
158-314
               

               
Cow position:
               
chr17:17193573-17193737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
68, 159
               

               
Conread position:
               
161-302
               

               
Cow position:
               
chr17:29715114-29714978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
117, 74
               

               
Conread position:
               
162-305
               

               
Cow position:
               
chr17:3541801-3541947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
162-306
               

               
Cow position:
               
chr17:13243958-13243814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
55, 88
               

               
Conread position:
               
162-312
               

               
Cow position:
               
chr17:10037499-10037657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
162-314
               

               
Cow position:
               
chr17:22241096-22241256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
64, 52
               

               
Conread position:
               
164-311
               

               
Cow position:
               
chr17:18673946-18673790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
66, 140
               

               
Conread position:
               
165-310
               

               
Cow position:
               
chr17:8809410-8809264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
113, 70
               

               
Conread position:
               
167-302
               

               
Cow position:
               
chr17:25345565-25345709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
167-316
               

               
Cow position:
               
chr17:24612747-24612895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
109, 68
               

               
Conread position:
               
168-307
               

               
Cow position:
               
chr17:20783096-20782956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
111, 67
               

               
Conread position:
               
171-310
               

               
Cow position:
               
chr17:22223816-22223958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
177-306
               

               
Cow position:
               
chr17:4680102-4679968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
177-310
               

               
Cow position:
               
chr17:24334554-24334692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
177-312
               

               
Cow position:
               
chr17:831692-831555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
177-323
               

               
Cow position:
               
chr17:35140758-35140599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
42, 145
               

               
Conread position:
               
180-330
               

               
Cow position:
               
chr17:21472079-21471924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
39, 134
               

               
Conread position:
               
187-324
               

               
Cow position:
               
chr17:4271246-4271099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
23, 13
               

               
Conread position:
               
188-334
               

               
Cow position:
               
chr17:20930420-20930570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
11, 126
               

               
Conread position:
               
189-321
               

               
Cow position:
               
chr17:21478596-21478460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
192-307
               

               
Cow position:
               
chr17:41144260-41144145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
86, 49
               

               
Conread position:
               
205-333
               

               
Cow position:
               
chr17:42589435-42589567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
213-317
               

               
Cow position:
               
chr17:35170358-35170251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
217-329
               

               
Cow position:
               
chr17:25582654-25582543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
47, 0
               
Show alignments to all cow chromosomes.