Cow genome map

Conread name: rcmu39_j5.y1

Conread position: 1-165
Cow position: chr12:32088476-32088305 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 130
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 9, 102

Conread position: 1-190
Cow position: chr12:5110851-5111047 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 148
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 9, 92

Conread position: 1-205
Cow position: chr12:43681214-43681003 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 167
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 6, 92

Conread position: 1-230
Cow position: chr12:3180618-3180389 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 172
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 9, 86

Conread position: 1-236
Cow position: chr12:21251105-21251344 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 179
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 30, 60

Conread position: 1-236
Cow position: chr12:32848775-32848540 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 186
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 8, 90

Conread position: 1-238
Cow position: chr12:250109-250347 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 172
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 9, 84

Conread position: 1-238
Cow position: chr12:1511554-1511798 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 103

Conread position: 1-238
Cow position: chr12:10358905-10358661 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 106

Conread position: 1-238
Cow position: chr12:21610812-21610570 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 180
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 32, 91

Conread position: 1-238
Cow position: chr12:39930378-39930134 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 103

Conread position: 1-239
Cow position: chr12:13259626-13259385 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 167
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 9, 67

Conread position: 2-221
Cow position: chr12:23511977-23512196 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 160
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 30, 20

Conread position: 3-238
Cow position: chr12:8626510-8626276 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 174
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 8, 90

Conread position: 3-238
Cow position: chr12:8627994-8628228 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 174
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 8, 90

Conread position: 4-164
Cow position: chr12:14423548-14423389 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 120
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 11, 92

Conread position: 4-166
Cow position: chr12:21888844-21889005 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 124
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 25, 18

Conread position: 4-173
Cow position: chr12:7674100-7673932 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 130
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 11, 92

Conread position: 4-178
Cow position: chr12:258928-258755 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 135
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 25, 18

Conread position: 4-178
Cow position: chr12:32340058-32340231 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 133
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 25, 18

Conread position: 4-205
Cow position: chr12:16302140-16302340 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 151
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 25, 18

Conread position: 4-218
Cow position: chr12:33925499-33925712 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 162
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 25, 18

Conread position: 4-226
Cow position: chr12:11582368-11582148 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 170
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 28, 13

Conread position: 4-238
Cow position: chr12:62009-62242 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 174
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 11, 92

Conread position: 4-238
Cow position: chr12:1056309-1056542 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 176
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 11, 92

Conread position: 4-238
Cow position: chr12:1405647-1405414 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 18

Conread position: 4-238
Cow position: chr12:1491365-1491132 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 18

Conread position: 4-238
Cow position: chr12:5107256-5107023 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 176
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 25, 18

Conread position: 4-238
Cow position: chr12:5327711-5327944 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 174
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 11, 81

Conread position: 4-238
Cow position: chr12:5776931-5777164 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 18

Conread position: 4-238
Cow position: chr12:6106150-6106382 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 172
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 11, 81

Conread position: 4-238
Cow position: chr12:8839452-8839218 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 81

Conread position: 4-238
Cow position: chr12:14568616-14568849 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 176
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 25, 18

Conread position: 4-238
Cow position: chr12:15925553-15925786 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 18

Conread position: 4-238
Cow position: chr12:22748413-22748180 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 176
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 11, 92

Conread position: 4-238
Cow position: chr12:27614614-27614381 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 179
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 25, 18

Conread position: 4-238
Cow position: chr12:27958327-27958560 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 92

Conread position: 4-238
Cow position: chr12:31027621-31027855 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 18

Conread position: 4-238
Cow position: chr12:32011579-32011816 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 176
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 25, 13

Conread position: 4-238
Cow position: chr12:35161806-35161573 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 175
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 11, 81

Conread position: 4-238
Cow position: chr12:35162962-35162729 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 175
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 11, 81

Conread position: 4-239
Cow position: chr12:25266135-25266368 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 174
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 11, 92

Conread position: 4-239
Cow position: chr12:34176563-34176329 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 178
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 25, 18

Conread position: 5-238
Cow position: chr12:25148420-25148652 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 174
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 24, 17

Conread position: 6-178
Cow position: chr12:46111914-46112092 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 140
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 23, 97

Conread position: 6-179
Cow position: chr12:28013028-28013207 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 136
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 22, 86

Conread position: 6-190
Cow position: chr12:21010275-21010465 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 148
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 25, 97

Conread position: 6-190
Cow position: chr12:31829246-31829436 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 148
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 21, 97

Conread position: 6-191
Cow position: chr12:24557783-24557592 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 144
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 27, 86

Conread position: 6-221
Cow position: chr12:36287809-36288030 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 168
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 25, 97

Conread position: 6-233
Cow position: chr12:19971953-19971734 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 165
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 192, 20

Conread position: 6-233
Cow position: chr12:38893567-38893334 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 179
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 25, 97

Conread position: 6-236
Cow position: chr12:32757900-32757664 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 178
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 25, 97

Conread position: 6-237
Cow position: chr12:8773870-8773632 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 185
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 25, 87

Conread position: 6-238
Cow position: chr12:1007219-1006981 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 183
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 25, 97

Conread position: 6-238
Cow position: chr12:1408021-1407797 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 170
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 85, 0

Conread position: 6-238
Cow position: chr12:12928703-12928940 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 182
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 25, 97

Conread position: 6-238
Cow position: chr12:17718497-17718266 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 90

Conread position: 6-238
Cow position: chr12:21665339-21665101 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 179
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 25, 97

Conread position: 6-238
Cow position: chr12:23138125-23138363 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 184
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 25, 97

Conread position: 6-238
Cow position: chr12:24980924-24980687 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 173
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 25, 102

Conread position: 6-238
Cow position: chr12:35367604-35367371 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 171
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 25, 81

Conread position: 6-238
Cow position: chr12:45145256-45145018 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 97

Conread position: 9-217
Cow position: chr12:25313513-25313727 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 166
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 22, 94

Conread position: 24-238
Cow position: chr12:42604998-42605210 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 165
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 71, 0

Conread position: 27-173
Cow position: chr12:34514477-34514621 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 115
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 68, 0

Conread position: 27-202
Cow position: chr12:23152561-23152733 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 128
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 167, 68

Conread position: 27-225
Cow position: chr12:19871386-19871194 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 152
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 67, 0

Conread position: 27-231
Cow position: chr12:21303603-21303401 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 156
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 68, 0

Conread position: 27-232
Cow position: chr12:15939687-15939890 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 155
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 67, 0

Conread position: 27-234
Cow position: chr12:19040788-19040583 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 164
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 0

Conread position: 27-236
Cow position: chr12:21904541-21904333 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 156
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 138, 55

Conread position: 27-238
Cow position: chr12:5713138-5712928 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 153
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 193, 57

Conread position: 27-238
Cow position: chr12:8841881-8842086 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 158
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 67, 72

Conread position: 27-238
Cow position: chr12:9988512-9988722 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 165
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 128, 67

Conread position: 27-238
Cow position: chr12:21314255-21314464 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 154
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 57, 0

Conread position: 27-238
Cow position: chr12:21391848-21392058 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 156
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 112, 67

Conread position: 27-238
Cow position: chr12:24696720-24696511 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 160
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 68, 0

Conread position: 27-238
Cow position: chr12:26870483-26870273 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 155
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 89, 57

Conread position: 27-238
Cow position: chr12:32220274-32220062 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 156
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 157, 19

Conread position: 27-239
Cow position: chr12:15231209-15230992 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 168
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 164, 57

Conread position: 28-238
Cow position: chr12:21719003-21719207 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 154
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 56, 0

Conread position: 28-239
Cow position: chr12:23159327-23159548 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 159
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 9, 0

Conread position: 31-231
Cow position: chr12:21075006-21074810 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 146
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 63, 0

Conread position: 36-236
Cow position: chr12:1774753-1774949 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 146
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 58, 0

Conread position: 36-238
Cow position: chr12:15695545-15695745 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 148
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 173, 48

Conread position: 36-238
Cow position: chr12:24992657-24992857 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 156
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 59, 0

Conread position: 36-238
Cow position: chr12:35473370-35473570 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 160
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 59, 0

Conread position: 36-238
Cow position: chr12:47803337-47803137 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 150
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 57, 0

Conread position: 37-238
Cow position: chr12:42194798-42194600 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 155
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 15, 0

Conread position: 38-238
Cow position: chr12:46163903-46163705 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 156
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 57, 0

Show alignments to all cow chromosomes.