Cow genome map

Conread name: rcmu39_j5.y1

Conread position: 1-234
Cow position: chr13:34940664-34940428 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 181
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 9, 92

Conread position: 1-236
Cow position: chr13:5229964-5230207 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 182
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 9, 92

Conread position: 1-236
Cow position: chr13:20484164-20483923 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 181
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 9, 91

Conread position: 1-236
Cow position: chr13:32955460-32955701 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 182
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 9, 103

Conread position: 1-236
Cow position: chr13:32982401-32982642 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 182
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 9, 103

Conread position: 1-238
Cow position: chr13:3657349-3657593 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 103

Conread position: 1-238
Cow position: chr13:7609146-7608904 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 189
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 9, 92

Conread position: 1-238
Cow position: chr13:11795696-11795943 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 188
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 9, 50

Conread position: 1-238
Cow position: chr13:34870961-34870717 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 178
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 9, 92

Conread position: 1-238
Cow position: chr13:36936732-36936489 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 182
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 9, 91

Conread position: 1-238
Cow position: chr13:61954244-61954000 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 184
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 12, 93

Conread position: 3-168
Cow position: chr13:46427720-46427549 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 132
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 8, 100

Conread position: 3-238
Cow position: chr13:2138179-2138421 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 178
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 7, 104

Conread position: 3-238
Cow position: chr13:19566720-19566477 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 186
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 5, 91

Conread position: 4-178
Cow position: chr13:644927-644754 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 137
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 25, 18

Conread position: 4-183
Cow position: chr13:56692260-56692082 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 137
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 25, 18

Conread position: 4-190
Cow position: chr13:5331328-5331143 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 140
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 29, 92

Conread position: 4-190
Cow position: chr13:11130218-11130398 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 134
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 5, 68

Conread position: 4-190
Cow position: chr13:19261295-19261480 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 142
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 25, 18

Conread position: 4-218
Cow position: chr13:19102683-19102896 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 162
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 25, 18

Conread position: 4-219
Cow position: chr13:838417-838632 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 160
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 25, 18

Conread position: 4-221
Cow position: chr13:504324-504108 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 164
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 25, 18

Conread position: 4-236
Cow position: chr13:6360856-6360626 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 175
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 11, 43

Conread position: 4-237
Cow position: chr13:49976660-49976428 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 175
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 11, 92

Conread position: 4-238
Cow position: chr13:681041-680808 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 175
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 11, 92

Conread position: 4-238
Cow position: chr13:3556402-3556169 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 13

Conread position: 4-238
Cow position: chr13:6719174-6719407 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 180
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 25, 18

Conread position: 4-238
Cow position: chr13:8068212-8068445 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 180
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 25, 18

Conread position: 4-238
Cow position: chr13:11053324-11053553 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 179
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 25, 18

Conread position: 4-238
Cow position: chr13:13126725-13126950 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 171
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 25, 18

Conread position: 4-238
Cow position: chr13:16807587-16807354 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 92

Conread position: 4-238
Cow position: chr13:28526320-28526552 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 18

Conread position: 4-238
Cow position: chr13:31510134-31509904 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 175
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 25, 18

Conread position: 4-238
Cow position: chr13:31989864-31989631 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 178
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 25, 18

Conread position: 4-238
Cow position: chr13:42087138-42087371 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 175
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 11, 91

Conread position: 4-238
Cow position: chr13:45933741-45933508 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 176
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 25, 18

Conread position: 4-238
Cow position: chr13:53051826-53051593 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 92

Conread position: 6-151
Cow position: chr13:5498807-5498958 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 115
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 25, 86

Conread position: 6-167
Cow position: chr13:38013659-38013822 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 122
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 37, 25

Conread position: 6-207
Cow position: chr13:34762991-34763188 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 148
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 33, 80

Conread position: 6-212
Cow position: chr13:55337738-55337526 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 163
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 24, 97

Conread position: 6-229
Cow position: chr13:46055937-46055709 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 175
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 25, 97

Conread position: 6-233
Cow position: chr13:34298575-34298344 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 173
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 25, 86

Conread position: 6-235
Cow position: chr13:29055433-29055668 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 182
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 21, 97

Conread position: 6-236
Cow position: chr13:8781903-8781667 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 179
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 25, 97

Conread position: 6-236
Cow position: chr13:53157394-53157630 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 183
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 25, 97

Conread position: 6-238
Cow position: chr13:143124-143362 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 181
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 25, 97

Conread position: 6-238
Cow position: chr13:561391-561627 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 184
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 25, 86

Conread position: 6-238
Cow position: chr13:3021490-3021728 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 97

Conread position: 6-238
Cow position: chr13:5261746-5261513 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 171
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 25, 97

Conread position: 6-238
Cow position: chr13:11390253-11390015 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 181
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 25, 97

Conread position: 6-238
Cow position: chr13:21837302-21837540 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 183
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 25, 97

Conread position: 6-238
Cow position: chr13:28131501-28131263 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 182
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 24, 97

Conread position: 6-238
Cow position: chr13:32080871-32080633 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 181
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 25, 100

Conread position: 6-238
Cow position: chr13:32253356-32253594 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 180
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 21, 100

Conread position: 6-238
Cow position: chr13:32549754-32549517 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 171
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 25, 86

Conread position: 6-238
Cow position: chr13:33522963-33523201 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 97

Conread position: 6-238
Cow position: chr13:50190076-50190314 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 178
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 25, 97

Conread position: 6-238
Cow position: chr13:58313327-58313089 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 97

Conread position: 6-238
Cow position: chr13:60646591-60646828 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 182
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 25, 97

Conread position: 6-239
Cow position: chr13:3015164-3014934 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 171
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 25, 80

Conread position: 8-237
Cow position: chr13:41337676-41337911 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 170
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 23, 84

Conread position: 12-222
Cow position: chr13:34321991-34322200 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 162
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 27, 84

Conread position: 19-235
Cow position: chr13:9571026-9571241 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 163
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 23, 65

Conread position: 26-238
Cow position: chr13:23266862-23267073 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 162
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 167, 58

Conread position: 27-194
Cow position: chr13:11254681-11254846 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 133
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 112, 57

Conread position: 27-203
Cow position: chr13:18097656-18097830 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 139
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 67, 0

Conread position: 27-214
Cow position: chr13:54313027-54312843 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 133
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 71, 0

Conread position: 27-218
Cow position: chr13:11826786-11826974 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 144
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 171, 56

Conread position: 27-229
Cow position: chr13:34051588-34051388 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 159
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 57, 0

Conread position: 27-229
Cow position: chr13:55405674-55405482 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 142
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 67, 0

Conread position: 27-232
Cow position: chr13:5622731-5622936 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 154
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 32, 57

Conread position: 27-234
Cow position: chr13:50079602-50079805 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 149
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 57, 0

Conread position: 27-234
Cow position: chr13:60920800-60920993 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 152
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 50, 0

Conread position: 27-236
Cow position: chr13:20564015-20564223 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 152
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 49, 59

Conread position: 27-236
Cow position: chr13:30241511-30241304 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 155
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 57, 0

Conread position: 27-238
Cow position: chr13:3001376-3001593 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 162
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 112, 57

Conread position: 27-238
Cow position: chr13:16248976-16249187 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 164
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 103, 67

Conread position: 27-238
Cow position: chr13:21905952-21906149 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 155
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 57, 0

Conread position: 27-238
Cow position: chr13:24237497-24237289 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 163
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 15, 58

Conread position: 27-238
Cow position: chr13:28094879-28095090 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 140
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 41, 50

Conread position: 27-238
Cow position: chr13:28132443-28132234 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 164
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 68, 0

Conread position: 27-238
Cow position: chr13:34376564-34376771 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 155
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 67, 0

Conread position: 27-238
Cow position: chr13:39911371-39911162 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 158
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 57, 0

Conread position: 27-238
Cow position: chr13:44323995-44324206 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 166
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 165, 67

Conread position: 28-235
Cow position: chr13:22774269-22774064 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 155
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 5, 56

Conread position: 28-237
Cow position: chr13:22907303-22907510 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 163
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 9, 57

Conread position: 28-238
Cow position: chr13:34508857-34509065 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 156
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 66, 0

Conread position: 28-238
Cow position: chr13:46598328-46598537 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 152
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 9, 57

Conread position: 28-239
Cow position: chr13:34993935-34993735 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 151
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 5, 57

Conread position: 31-230
Cow position: chr13:25694461-25694263 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 152
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 193, 53

Conread position: 31-238
Cow position: chr13:14737854-14737648 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 165
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 53

Conread position: 36-236
Cow position: chr13:9112732-9112534 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 151
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 48, 0

Conread position: 36-238
Cow position: chr13:50112423-50112223 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 155
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 59, 0

Conread position: 39-235
Cow position: chr13:22781032-22781224 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 146
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 44, 0

Show alignments to all cow chromosomes.