Cow genome map

Conread name: rcmu39_j5.y1

Conread position: 1-148
Cow position: chr14:9482822-9482668 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 117
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 9, 103

Conread position: 1-190
Cow position: chr14:21596545-21596735 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 145
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 6, 96

Conread position: 1-219
Cow position: chr14:22690025-22690249 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 171
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 28, 91

Conread position: 1-236
Cow position: chr14:13581740-13581499 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 175
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 9, 91

Conread position: 1-236
Cow position: chr14:40475843-40476078 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 184
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 9, 80

Conread position: 1-238
Cow position: chr14:748735-748972 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 181
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 28, 21

Conread position: 1-238
Cow position: chr14:8998485-8998242 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 186
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 30, 91

Conread position: 1-238
Cow position: chr14:9744746-9744990 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 187
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 9, 103

Conread position: 1-238
Cow position: chr14:12740178-12740422 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 185
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 9, 92

Conread position: 1-238
Cow position: chr14:28350827-28351071 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 103

Conread position: 1-238
Cow position: chr14:45789842-45789604 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 178
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 9, 102

Conread position: 1-238
Cow position: chr14:50114238-50113994 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 182
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 9, 92

Conread position: 2-178
Cow position: chr14:49995681-49995856 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 132
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 13, 83

Conread position: 3-188
Cow position: chr14:424054-423864 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 147
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 28, 99

Conread position: 3-238
Cow position: chr14:38459285-38459525 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 100

Conread position: 4-170
Cow position: chr14:38651771-38651606 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 129
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 25, 18

Conread position: 4-178
Cow position: chr14:5994479-5994306 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 134
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 25, 18

Conread position: 4-205
Cow position: chr14:31289719-31289519 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 152
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 25, 18

Conread position: 4-212
Cow position: chr14:48572498-48572705 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 150
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 25, 18

Conread position: 4-236
Cow position: chr14:30581606-30581830 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 174
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 21, 92

Conread position: 4-238
Cow position: chr14:2289113-2288880 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 179
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 25, 18

Conread position: 4-238
Cow position: chr14:8396920-8397153 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 92

Conread position: 4-238
Cow position: chr14:12616391-12616624 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 92

Conread position: 4-238
Cow position: chr14:13236939-13237172 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 92

Conread position: 4-238
Cow position: chr14:13370087-13369854 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 176
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 25, 18

Conread position: 4-238
Cow position: chr14:15336773-15337006 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 92

Conread position: 4-238
Cow position: chr14:19418954-19418721 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 177
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 11, 92

Conread position: 4-238
Cow position: chr14:31882028-31882261 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 18

Conread position: 4-238
Cow position: chr14:34168158-34167929 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 174
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 91, 0

Conread position: 4-238
Cow position: chr14:38238236-38238469 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 179
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 25, 18

Conread position: 4-238
Cow position: chr14:38435891-38435660 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 174
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 11, 92

Conread position: 4-238
Cow position: chr14:40969015-40968782 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 92

Conread position: 5-238
Cow position: chr14:44367543-44367304 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 176
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 26, 87

Conread position: 6-178
Cow position: chr14:31155690-31155512 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 142
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 25, 97

Conread position: 6-204
Cow position: chr14:35016224-35016020 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 155
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 21, 97

Conread position: 6-231
Cow position: chr14:17488474-17488705 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 179
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 25, 97

Conread position: 6-235
Cow position: chr14:8924961-8924726 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 183
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 21, 97

Conread position: 6-238
Cow position: chr14:5645271-5645033 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 183
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 25, 97

Conread position: 6-238
Cow position: chr14:9047703-9047465 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 180
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 25, 97

Conread position: 6-238
Cow position: chr14:9811546-9811308 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 97

Conread position: 6-238
Cow position: chr14:11462215-11462453 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 181
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 25, 100

Conread position: 6-238
Cow position: chr14:12858772-12859011 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 179
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 25, 97

Conread position: 6-238
Cow position: chr14:13683431-13683193 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 97

Conread position: 6-238
Cow position: chr14:23254473-23254711 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 180
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 25, 97

Conread position: 6-238
Cow position: chr14:29044808-29045046 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 183
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 25, 97

Conread position: 6-238
Cow position: chr14:34629337-34629575 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 177
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 23, 16

Conread position: 6-238
Cow position: chr14:35301162-35301402 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 167
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 22, 165

Conread position: 6-238
Cow position: chr14:40345382-40345155 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 180
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 24, 94

Conread position: 6-239
Cow position: chr14:14420545-14420779 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 167
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 22, 91

Conread position: 6-239
Cow position: chr14:17762524-17762760 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 185
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 25, 97

Conread position: 6-239
Cow position: chr14:47603041-47602807 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 173
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 26, 86

Conread position: 7-239
Cow position: chr14:38915225-38915450 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 175
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 77, 0

Conread position: 22-236
Cow position: chr14:19550038-19549824 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 164
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 7, 75

Conread position: 22-238
Cow position: chr14:14082598-14082384 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 167
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 73, 0

Conread position: 22-238
Cow position: chr14:25363631-25363844 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 159
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 7, 74

Conread position: 22-239
Cow position: chr14:8102830-8103042 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 157
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 9, 63

Conread position: 26-185
Cow position: chr14:35932377-35932225 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 119
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 51, 0

Conread position: 27-169
Cow position: chr14:47042899-47042760 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 108
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 45, 50

Conread position: 27-187
Cow position: chr14:20774003-20773843 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 127
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 27-209
Cow position: chr14:31400647-31400825 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 135
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 57, 0

Conread position: 27-214
Cow position: chr14:13811199-13811384 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 143
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 114, 55

Conread position: 27-217
Cow position: chr14:28116897-28116705 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 151
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 53, 100

Conread position: 27-221
Cow position: chr14:1661282-1661090 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 146
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 68, 0

Conread position: 27-222
Cow position: chr14:39822241-39822444 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 155
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 59, 109

Conread position: 27-226
Cow position: chr14:12483237-12483045 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 150
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 67, 0

Conread position: 27-232
Cow position: chr14:36710225-36710429 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 155
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 111, 56

Conread position: 27-233
Cow position: chr14:21533974-21533775 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 153
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 57, 0

Conread position: 27-233
Cow position: chr14:32500008-32499804 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 162
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 68, 0

Conread position: 27-235
Cow position: chr14:29726717-29726510 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 161
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 70, 0

Conread position: 27-235
Cow position: chr14:48495078-48494876 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 150
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 67, 0

Conread position: 27-236
Cow position: chr14:24922619-24922412 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 160
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 57, 0

Conread position: 27-236
Cow position: chr14:46489006-46488799 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 149
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 57, 0

Conread position: 27-237
Cow position: chr14:21200759-21200550 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 152
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 25, 0

Conread position: 27-237
Cow position: chr14:25694894-25694688 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 160
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 44, 50

Conread position: 27-238
Cow position: chr14:9449697-9449902 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 159
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 68, 0

Conread position: 27-238
Cow position: chr14:12545500-12545291 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 161
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 57, 0

Conread position: 27-238
Cow position: chr14:17757204-17757412 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 163
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 57, 0

Conread position: 27-238
Cow position: chr14:22103721-22103930 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 162
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 71, 0

Conread position: 27-238
Cow position: chr14:33679883-33679676 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 161
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 19, 0

Conread position: 27-238
Cow position: chr14:35667279-35667492 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 143
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 111, 57

Conread position: 27-238
Cow position: chr14:43561039-43560832 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 156
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 57, 0

Conread position: 27-238
Cow position: chr14:46636699-46636905 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 158
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 156, 67

Conread position: 27-238
Cow position: chr14:46960223-46960014 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 163
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 68, 0

Conread position: 27-238
Cow position: chr14:47579454-47579245 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 164
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 68, 0

Conread position: 27-238
Cow position: chr14:50145062-50144853 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 157
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 57, 0

Conread position: 27-239
Cow position: chr14:5075825-5075616 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 159
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 178, 57

Conread position: 27-239
Cow position: chr14:27052345-27052552 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 149
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 57, 0

Conread position: 27-239
Cow position: chr14:37136639-37136431 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 164
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 45, 50

Conread position: 28-238
Cow position: chr14:28208448-28208656 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 157
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 66, 0

Conread position: 31-233
Cow position: chr14:10820074-10819868 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 144
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 126, 65

Conread position: 31-238
Cow position: chr14:24836635-24836429 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 164
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 189, 53

Conread position: 33-234
Cow position: chr14:38812886-38813083 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 148
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 48, 0

Conread position: 36-238
Cow position: chr14:7227235-7227035 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 154
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 59, 0

Conread position: 36-238
Cow position: chr14:19489808-19489609 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 149
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 48, 0

Conread position: 36-238
Cow position: chr14:50121597-50121790 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 151
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 48, 0

Conread position: 37-238
Cow position: chr14:41478575-41478376 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 152
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 47, 0

Conread position: 42-239
Cow position: chr14:33581984-33582177 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 157
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 52, 0

Show alignments to all cow chromosomes.