Cow genome map
| Conread name: | rcmu39_j5.y1 |
| Conread position: | 1-171 |
| Cow position: | chr17:8222792-8222615 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 9, 92 |
| Conread position: | 1-195 |
| Cow position: | chr17:18200824-18200624 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 9, 101 |
| Conread position: | 1-230 |
| Cow position: | chr17:18242085-18241849 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 184 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 9, 102 |
| Conread position: | 1-232 |
| Cow position: | chr17:138695-138462 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 9, 92 |
| Conread position: | 1-236 |
| Cow position: | chr17:20546224-20545982 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 187 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 9, 103 |
| Conread position: | 1-237 |
| Cow position: | chr17:18721792-18722034 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 91 |
| Conread position: | 1-238 |
| Cow position: | chr17:184234-183990 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 186 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 9, 102 |
| Conread position: | 1-238 |
| Cow position: | chr17:2244979-2245215 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 9, 20 |
| Conread position: | 1-238 |
| Cow position: | chr17:14240156-14239912 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 188 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 9, 103 |
| Conread position: | 1-238 |
| Cow position: | chr17:19215308-19215551 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 185 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 9, 82 |
| Conread position: | 1-238 |
| Cow position: | chr17:22106548-22106792 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 188 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 9, 92 |
| Conread position: | 1-239 |
| Cow position: | chr17:452939-452694 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 189 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 9, 92 |
| Conread position: | 4-156 |
| Cow position: | chr17:18777754-18777905 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 25, 18 |
| Conread position: | 4-190 |
| Cow position: | chr17:5806413-5806598 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 25, 18 |
| Conread position: | 4-190 |
| Cow position: | chr17:14865308-14865493 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 25, 13 |
| Conread position: | 4-201 |
| Cow position: | chr17:5638813-5639009 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 11, 92 |
| Conread position: | 4-201 |
| Cow position: | chr17:5672441-5672637 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 11, 92 |
| Conread position: | 4-209 |
| Cow position: | chr17:14006503-14006299 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 21, 81 |
| Conread position: | 4-209 |
| Cow position: | chr17:43231092-43231296 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 25, 18 |
| Conread position: | 4-236 |
| Cow position: | chr17:37528896-37529127 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 173 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 11, 92 |
| Conread position: | 4-236 |
| Cow position: | chr17:43471515-43471745 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 174 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 28, 18 |
| Conread position: | 4-238 |
| Cow position: | chr17:1970227-1969994 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 179 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 25, 18 |
| Conread position: | 4-238 |
| Cow position: | chr17:15325160-15325392 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 178 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 25, 18 |
| Conread position: | 4-238 |
| Cow position: | chr17:20033519-20033282 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 29, 88 |
| Conread position: | 4-238 |
| Cow position: | chr17:20390850-20390617 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 173 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 11, 92 |
| Conread position: | 4-238 |
| Cow position: | chr17:21770756-21770523 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 13 |
| Conread position: | 4-238 |
| Cow position: | chr17:22249176-22249408 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 25, 18 |
| Conread position: | 4-238 |
| Cow position: | chr17:26829668-26829900 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 177 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 11, 92 |
| Conread position: | 4-238 |
| Cow position: | chr17:30182504-30182737 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 176 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 25, 18 |
| Conread position: | 5-236 |
| Cow position: | chr17:11785959-11785729 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 17 |
| Conread position: | 5-238 |
| Cow position: | chr17:6122865-6122626 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 182 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 26, 98 |
| Conread position: | 5-238 |
| Cow position: | chr17:38916953-38917185 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 177 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 24, 17 |
| Conread position: | 6-170 |
| Cow position: | chr17:16654017-16654180 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 23, 16 |
| Conread position: | 6-190 |
| Cow position: | chr17:6612103-6611913 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 21, 97 |
| Conread position: | 6-236 |
| Cow position: | chr17:4480801-4481037 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 181 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 18, 97 |
| Conread position: | 6-237 |
| Cow position: | chr17:23321335-23321576 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 27, 86 |
| Conread position: | 6-238 |
| Cow position: | chr17:2265270-2265038 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 175 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 33, 91 |
| Conread position: | 6-238 |
| Cow position: | chr17:15140258-15140495 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 182 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 25, 97 |
| Conread position: | 6-238 |
| Cow position: | chr17:15708912-15709150 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 181 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 24, 97 |
| Conread position: | 6-238 |
| Cow position: | chr17:15809068-15808830 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 86 |
| Conread position: | 6-238 |
| Cow position: | chr17:27791701-27791930 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 33, 91 |
| Conread position: | 6-238 |
| Cow position: | chr17:29824880-29825118 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 182 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 25, 97 |
| Conread position: | 6-238 |
| Cow position: | chr17:44641389-44641627 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 184 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 21, 97 |
| Conread position: | 6-239 |
| Cow position: | chr17:13707808-13707587 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 6-239 |
| Cow position: | chr17:34236170-34236409 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 25, 97 |
| Conread position: | 22-208 |
| Cow position: | chr17:14932808-14932995 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 7, 75 |
| Conread position: | 22-239 |
| Cow position: | chr17:20215150-20214938 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 174 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 7, 64 |
| Conread position: | 26-212 |
| Cow position: | chr17:16153810-16153994 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 27-169 |
| Cow position: | chr17:3305627-3305486 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 122, 57 |
| Conread position: | 27-178 |
| Cow position: | chr17:16464135-16463986 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 27-188 |
| Cow position: | chr17:15351099-15350942 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 27-231 |
| Cow position: | chr17:2177032-2176833 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 125, 67 |
| Conread position: | 27-234 |
| Cow position: | chr17:1708678-1708882 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 159 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 27-234 |
| Cow position: | chr17:1711846-1712050 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 159 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 27-238 |
| Cow position: | chr17:30485-30276 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 160 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 27-238 |
| Cow position: | chr17:147974-147764 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 130, 66 |
| Conread position: | 27-238 |
| Cow position: | chr17:1569162-1569373 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 109, 57 |
| Conread position: | 27-238 |
| Cow position: | chr17:1784489-1784699 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 201, 51 |
| Conread position: | 27-238 |
| Cow position: | chr17:2033250-2033046 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 27-238 |
| Cow position: | chr17:21766949-21766740 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 27-238 |
| Cow position: | chr17:29212686-29212477 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 27-239 |
| Cow position: | chr17:2078695-2078494 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 166 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 27-239 |
| Cow position: | chr17:3780508-3780298 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 27-239 |
| Cow position: | chr17:22233233-22233444 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 182, 57 |
| Conread position: | 27-239 |
| Cow position: | chr17:27978163-27977964 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 170 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 27-239 |
| Cow position: | chr17:43145309-43145517 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 117, 57 |
| Conread position: | 28-232 |
| Cow position: | chr17:11775191-11775394 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 110, 72 |
| Conread position: | 28-238 |
| Cow position: | chr17:11024955-11024742 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 9, 156 |
| Conread position: | 31-210 |
| Cow position: | chr17:29079427-29079252 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 31-238 |
| Cow position: | chr17:22774388-22774593 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 35-235 |
| Cow position: | chr17:11619244-11619048 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 36-238 |
| Cow position: | chr17:29156420-29156226 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 36-239 |
| Cow position: | chr17:2178908-2178710 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 36-239 |
| Cow position: | chr17:18591465-18591272 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 38-239 |
| Cow position: | chr17:1457342-1457539 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 45-237 |
| Cow position: | chr17:8994602-8994412 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 53, 0 |
Show alignments to all cow chromosomes.