Cow genome map
| Conread name: | rcmu39_j5.y1 |
| Conread position: | 1-178 |
| Cow position: | chr18:18215703-18215890 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 1-236 |
| Cow position: | chr18:21811290-21811048 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 184 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 9, 92 |
| Conread position: | 1-236 |
| Cow position: | chr18:36776587-36776344 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 188 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 6, 93 |
| Conread position: | 1-238 |
| Cow position: | chr18:27539742-27539499 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 8, 92 |
| Conread position: | 1-238 |
| Cow position: | chr18:28928285-28928523 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 180 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 9, 100 |
| Conread position: | 1-238 |
| Cow position: | chr18:28968979-28969219 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 9, 92 |
| Conread position: | 1-238 |
| Cow position: | chr18:33753021-33752784 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 9, 16 |
| Conread position: | 1-238 |
| Cow position: | chr18:37583147-37583392 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 187 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 9, 103 |
| Conread position: | 2-238 |
| Cow position: | chr18:32436792-32437035 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 91 |
| Conread position: | 3-160 |
| Cow position: | chr18:12201223-12201379 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 6, 80 |
| Conread position: | 3-236 |
| Cow position: | chr18:22791115-22791346 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 39, 83 |
| Conread position: | 4-160 |
| Cow position: | chr18:10292030-10291875 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 11, 92 |
| Conread position: | 4-203 |
| Cow position: | chr18:51653898-51653701 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 11, 6 |
| Conread position: | 4-207 |
| Cow position: | chr18:16463347-16463549 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 25, 18 |
| Conread position: | 4-231 |
| Cow position: | chr18:50835086-50835314 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 175 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 25, 18 |
| Conread position: | 4-236 |
| Cow position: | chr18:35296464-35296236 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 4-236 |
| Cow position: | chr18:35444069-35444300 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 179 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 25, 18 |
| Conread position: | 4-236 |
| Cow position: | chr18:52629959-52630189 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 18 |
| Conread position: | 4-238 |
| Cow position: | chr18:603165-603398 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 176 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 25, 18 |
| Conread position: | 4-238 |
| Cow position: | chr18:5202788-5202555 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 176 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 11, 92 |
| Conread position: | 4-238 |
| Cow position: | chr18:9981919-9981686 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 175 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 25, 18 |
| Conread position: | 4-238 |
| Cow position: | chr18:11869786-11869553 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 179 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 25, 18 |
| Conread position: | 4-238 |
| Cow position: | chr18:13270209-13269976 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 178 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 11, 95 |
| Conread position: | 4-238 |
| Cow position: | chr18:19310466-19310233 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 177 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 11, 81 |
| Conread position: | 4-238 |
| Cow position: | chr18:24037547-24037777 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 178 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 25, 18 |
| Conread position: | 4-238 |
| Cow position: | chr18:24212236-24212003 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 92 |
| Conread position: | 4-238 |
| Cow position: | chr18:24619728-24619495 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 180 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 25, 18 |
| Conread position: | 4-238 |
| Cow position: | chr18:29071720-29071488 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 92 |
| Conread position: | 4-238 |
| Cow position: | chr18:51602366-51602599 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 177 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 25, 18 |
| Conread position: | 4-238 |
| Cow position: | chr18:52574414-52574182 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 179 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 25, 18 |
| Conread position: | 4-238 |
| Cow position: | chr18:55554550-55554317 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 178 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 25, 18 |
| Conread position: | 4-239 |
| Cow position: | chr18:16463567-16463804 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 185 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 25, 18 |
| Conread position: | 6-188 |
| Cow position: | chr18:30607000-30606812 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 25, 86 |
| Conread position: | 6-189 |
| Cow position: | chr18:26243154-26243343 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 25, 97 |
| Conread position: | 6-230 |
| Cow position: | chr18:28930117-28930337 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 170 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 6-232 |
| Cow position: | chr18:2853491-2853718 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 31, 81 |
| Conread position: | 6-236 |
| Cow position: | chr18:29044406-29044643 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 25, 86 |
| Conread position: | 6-236 |
| Cow position: | chr18:51697950-51697714 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 179 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 25, 97 |
| Conread position: | 6-238 |
| Cow position: | chr18:17670663-17670891 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 22, 75 |
| Conread position: | 6-238 |
| Cow position: | chr18:19355817-19355581 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 25, 82 |
| Conread position: | 6-238 |
| Cow position: | chr18:22682082-22681856 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 6-238 |
| Cow position: | chr18:27994680-27994918 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 180 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 25, 97 |
| Conread position: | 6-238 |
| Cow position: | chr18:32164627-32164865 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 182 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 25, 97 |
| Conread position: | 6-238 |
| Cow position: | chr18:33271941-33271704 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 27, 85 |
| Conread position: | 6-238 |
| Cow position: | chr18:37732986-37732756 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 173 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 19, 41 |
| Conread position: | 6-238 |
| Cow position: | chr18:40758103-40758343 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 95 |
| Conread position: | 6-238 |
| Cow position: | chr18:51459544-51459775 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 176 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 23, 11 |
| Conread position: | 6-239 |
| Cow position: | chr18:23688476-23688237 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 97 |
| Conread position: | 6-239 |
| Cow position: | chr18:29797781-29798021 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 98 |
| Conread position: | 6-239 |
| Cow position: | chr18:50093140-50093379 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 182 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 25, 97 |
| Conread position: | 14-238 |
| Cow position: | chr18:29240370-29240152 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 173 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 14-239 |
| Cow position: | chr18:15172144-15171927 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 22-236 |
| Cow position: | chr18:22182257-22182469 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 7, 64 |
| Conread position: | 27-180 |
| Cow position: | chr18:48548114-48547963 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 27-188 |
| Cow position: | chr18:33522502-33522343 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 27-189 |
| Cow position: | chr18:23659619-23659780 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 27-195 |
| Cow position: | chr18:40721343-40721508 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 27-222 |
| Cow position: | chr18:30876990-30877187 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 57, 167 |
| Conread position: | 27-238 |
| Cow position: | chr18:40195388-40195179 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 160 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 27-238 |
| Cow position: | chr18:43621450-43621659 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 162 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 27-238 |
| Cow position: | chr18:47745028-47744819 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 27-239 |
| Cow position: | chr18:17323655-17323455 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 28-239 |
| Cow position: | chr18:46874183-46874395 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 7, 57 |
| Conread position: | 31-236 |
| Cow position: | chr18:51300532-51300327 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 99, 52 |
| Conread position: | 36-190 |
| Cow position: | chr18:40159520-40159368 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 36-222 |
| Cow position: | chr18:51272847-51273027 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 37-235 |
| Cow position: | chr18:10890042-10889842 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 85, 47 |
| Conread position: | 37-238 |
| Cow position: | chr18:11778608-11778408 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 88, 56 |
| Conread position: | 38-238 |
| Cow position: | chr18:25866924-25867120 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 42-236 |
| Cow position: | chr18:10113270-10113079 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 181, 52 |
| Conread position: | 43-190 |
| Cow position: | chr18:54047130-54046985 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 46-191 |
| Cow position: | chr18:29991759-29991902 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 38, 0 |
Show alignments to all cow chromosomes.