Cow genome map

Conread name: rcmu39_j5.y1

Conread position: 1-162
Cow position: chr20:26053074-26053242 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 133
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 9, 103

Conread position: 1-190
Cow position: chr20:11516762-11516956 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 151
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 6, 90

Conread position: 1-212
Cow position: chr20:14211104-14211317 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 161
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 9, 87

Conread position: 1-236
Cow position: chr20:33181219-33181461 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 185
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 9, 100

Conread position: 1-238
Cow position: chr20:753712-753473 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 182
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 14, 96

Conread position: 1-238
Cow position: chr20:826051-825815 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 177
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 14, 95

Conread position: 1-238
Cow position: chr20:3808494-3808738 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 103

Conread position: 1-238
Cow position: chr20:15090093-15090340 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 182
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 9, 92

Conread position: 1-238
Cow position: chr20:16106727-16106483 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 92

Conread position: 1-238
Cow position: chr20:34643296-34643045 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 179
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 6, 92

Conread position: 1-238
Cow position: chr20:35107916-35108152 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 95

Conread position: 2-214
Cow position: chr20:13325388-13325169 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 169
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 8, 101

Conread position: 3-203
Cow position: chr20:30737551-30737344 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 160
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 8, 101

Conread position: 3-236
Cow position: chr20:24567992-24568232 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 101

Conread position: 3-238
Cow position: chr20:14672615-14672373 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 84

Conread position: 3-238
Cow position: chr20:21719834-21719593 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 180
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 7, 89

Conread position: 3-238
Cow position: chr20:24904267-24904507 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 182
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 6, 90

Conread position: 3-238
Cow position: chr20:31785104-31785338 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 177
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 26, 19

Conread position: 4-205
Cow position: chr20:31157868-31157668 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 151
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 25, 18

Conread position: 4-209
Cow position: chr20:31220566-31220362 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 154
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 33, 18

Conread position: 4-212
Cow position: chr20:13304030-13304237 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 118
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 25, 18

Conread position: 4-221
Cow position: chr20:29371153-29371366 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 164
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 10, 81

Conread position: 4-231
Cow position: chr20:16559264-16559489 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 170
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 11, 92

Conread position: 4-236
Cow position: chr20:19441176-19440946 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 172
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 25, 18

Conread position: 4-238
Cow position: chr20:774926-774693 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 18

Conread position: 4-238
Cow position: chr20:5086069-5086302 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 178
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 25, 18

Conread position: 4-238
Cow position: chr20:6135723-6135954 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 18

Conread position: 4-238
Cow position: chr20:10790724-10790491 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 179
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 25, 18

Conread position: 4-238
Cow position: chr20:15799692-15799925 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 177
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 25, 18

Conread position: 4-238
Cow position: chr20:20092567-20092334 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 18

Conread position: 4-238
Cow position: chr20:24542694-24542461 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 18

Conread position: 4-238
Cow position: chr20:28246982-28247215 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 92

Conread position: 4-238
Cow position: chr20:33597696-33597929 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 179
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 25, 18

Conread position: 4-238
Cow position: chr20:35093806-35093575 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 168
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 11, 95

Conread position: 4-238
Cow position: chr20:38957406-38957173 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 92

Conread position: 4-239
Cow position: chr20:20439701-20439936 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 172
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 25, 18

Conread position: 6-159
Cow position: chr20:9223125-9222966 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 124
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 21, 100

Conread position: 6-164
Cow position: chr20:12177217-12177381 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 128
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 24, 97

Conread position: 6-177
Cow position: chr20:13661072-13661249 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 137
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 27, 79

Conread position: 6-203
Cow position: chr20:37154694-37154898 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 156
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 25, 97

Conread position: 6-214
Cow position: chr20:14745885-14745671 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 169
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 25, 97

Conread position: 6-234
Cow position: chr20:35132281-35132046 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 169
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 24, 96

Conread position: 6-237
Cow position: chr20:28034592-28034820 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 176
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 25, 85

Conread position: 6-238
Cow position: chr20:5503474-5503712 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 97

Conread position: 6-238
Cow position: chr20:7810567-7810805 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 184
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 25, 86

Conread position: 6-238
Cow position: chr20:8970620-8970857 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 182
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 23, 86

Conread position: 6-238
Cow position: chr20:13025057-13025293 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 169
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 24, 86

Conread position: 6-238
Cow position: chr20:13575442-13575674 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 184
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 24, 85

Conread position: 6-238
Cow position: chr20:14925369-14925607 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 184
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 25, 97

Conread position: 6-238
Cow position: chr20:18092628-18092866 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 177
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 25, 100

Conread position: 6-238
Cow position: chr20:19306112-19306350 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 184
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 21, 97

Conread position: 6-238
Cow position: chr20:22048639-22048401 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 182
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 24, 97

Conread position: 6-238
Cow position: chr20:22060904-22061142 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 183
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 21, 97

Conread position: 6-238
Cow position: chr20:30146708-30146470 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 101

Conread position: 6-238
Cow position: chr20:30579136-30578898 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 183
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 25, 97

Conread position: 6-238
Cow position: chr20:31504603-31504365 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 97

Conread position: 6-238
Cow position: chr20:39234504-39234266 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 101

Conread position: 6-239
Cow position: chr20:19425465-19425227 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 183
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 25, 78

Conread position: 7-239
Cow position: chr20:14867119-14867349 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 164
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 87, 0

Conread position: 18-236
Cow position: chr20:27876734-27876517 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 164
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 165, 76

Conread position: 22-236
Cow position: chr20:42923804-42923593 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 150
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 72, 0

Conread position: 27-180
Cow position: chr20:14757026-14757177 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 115
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 57, 0

Conread position: 27-181
Cow position: chr20:9707886-9708037 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 112
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 57, 0

Conread position: 27-190
Cow position: chr20:5269787-5269945 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 124
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 47, 0

Conread position: 27-229
Cow position: chr20:30479352-30479153 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 149
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 68, 0

Conread position: 27-236
Cow position: chr20:6476762-6476557 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 165
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 9, 0

Conread position: 27-236
Cow position: chr20:8445657-8445450 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 161
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 57, 0

Conread position: 27-236
Cow position: chr20:12568072-12568279 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 159
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 57, 0

Conread position: 27-236
Cow position: chr20:13816866-13816659 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 148
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 68, 0

Conread position: 27-236
Cow position: chr20:14741431-14741223 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 163
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 114, 57

Conread position: 27-238
Cow position: chr20:7512691-7512896 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 155
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 128, 57

Conread position: 27-238
Cow position: chr20:9339268-9339062 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 163
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 67, 0

Conread position: 27-238
Cow position: chr20:10404940-10404737 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 158
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 120, 47

Conread position: 27-238
Cow position: chr20:12332927-12332711 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 155
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 160, 67

Conread position: 27-238
Cow position: chr20:15526989-15526780 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 160
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 57, 0

Conread position: 27-238
Cow position: chr20:20731502-20731289 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 154
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 161, 50

Conread position: 27-238
Cow position: chr20:25845379-25845588 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 150
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 57, 0

Conread position: 27-238
Cow position: chr20:26800040-26800249 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 161
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 57, 0

Conread position: 27-238
Cow position: chr20:31846583-31846797 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 161
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 56, 0

Conread position: 27-238
Cow position: chr20:34231612-34231821 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 163
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 68, 0

Conread position: 27-238
Cow position: chr20:35020166-35019957 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 162
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 67, 0

Conread position: 27-238
Cow position: chr20:42085777-42085568 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 163
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 68, 0

Conread position: 27-239
Cow position: chr20:9996778-9996567 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 161
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 166, 57

Conread position: 27-239
Cow position: chr20:12685331-12685549 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 154
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 142, 67

Conread position: 27-239
Cow position: chr20:18490193-18489980 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 165
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 111, 46

Conread position: 27-239
Cow position: chr20:28887616-28887410 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 163
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 55, 0

Conread position: 27-239
Cow position: chr20:35844189-35844396 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 145
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 57, 0

Conread position: 28-239
Cow position: chr20:20352107-20352310 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 154
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 141, 66

Conread position: 31-236
Cow position: chr20:15068054-15067854 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 156
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 120, 53

Conread position: 31-239
Cow position: chr20:869774-869982 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 150
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 41, 46

Conread position: 31-239
Cow position: chr20:18608529-18608323 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 155
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 63, 0

Conread position: 34-236
Cow position: chr20:11720014-11719815 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 151
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 60, 0

Conread position: 36-197
Cow position: chr20:9007562-9007720 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 119
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 58, 0

Conread position: 36-216
Cow position: chr20:3782469-3782651 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 133
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 50, 143

Conread position: 36-238
Cow position: chr20:34459077-34459277 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 148
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 105, 48

Conread position: 37-179
Cow position: chr20:16526422-16526567 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 86, 47

Conread position: 37-239
Cow position: chr20:5077220-5077026 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 146
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 47, 0

Conread position: 41-239
Cow position: chr20:10494429-10494233 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 154
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 42, 0

Conread position: 46-180
Cow position: chr20:17667759-17667627 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 48, 0

Show alignments to all cow chromosomes.