Cow genome map


           Conread name:
           rcmu39_j5.y1
        

               Conread position:
               1-162
               

               Cow position:
               
               

               Alignm length:
               171
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               9, 103
               

               Conread position:
               1-190
               

               Cow position:
               
               

               Alignm length:
               197
               

               Alignm identity:
               151
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               6, 90
               

               Conread position:
               1-212
               

               Cow position:
               
               

               Alignm length:
               216
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               9, 87
               

               Conread position:
               1-236
               

               Cow position:
               
               

               Alignm length:
               246
               

               Alignm identity:
               185
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               9, 100
               

               Conread position:
               1-238
               

               Cow position:
               
               

               Alignm length:
               242
               

               Alignm identity:
               182
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               14, 96
               

               Conread position:
               1-238
               

               Cow position:
               
               

               Alignm length:
               239
               

               Alignm identity:
               177
               

               Alignm E-value:
               8.96831e-44
               

               Alignm gaps (pig, cow):
               14, 95
               

               Conread position:
               1-238
               

               Cow position:
               
               

               Alignm length:
               247
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 103
               

               Conread position:
               1-238
               

               Cow position:
               
               

               Alignm length:
               250
               

               Alignm identity:
               182
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               9, 92
               

               Conread position:
               1-238
               

               Cow position:
               
               

               Alignm length:
               247
               

               Alignm identity:
               192
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 92
               

               Conread position:
               1-238
               

               Cow position:
               
               

               Alignm length:
               254
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               6, 92
               

               Conread position:
               1-238
               

               Cow position:
               
               

               Alignm length:
               239
               

               Alignm identity:
               180
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 95
               

               Conread position:
               2-214
               

               Cow position:
               
               

               Alignm length:
               222
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               8, 101
               

               Conread position:
               3-203
               

               Cow position:
               
               

               Alignm length:
               210
               

               Alignm identity:
               160
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               8, 101
               

               Conread position:
               3-236
               

               Cow position:
               
               

               Alignm length:
               243
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 101
               

               Conread position:
               3-238
               

               Cow position:
               
               

               Alignm length:
               245
               

               Alignm identity:
               194
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 84
               

               Conread position:
               3-238
               

               Cow position:
               
               

               Alignm length:
               244
               

               Alignm identity:
               180
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               7, 89
               

               Conread position:
               3-238
               

               Cow position:
               
               

               Alignm length:
               245
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               6, 90
               

               Conread position:
               3-238
               

               Cow position:
               
               

               Alignm length:
               238
               

               Alignm identity:
               177
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               26, 19
               

               Conread position:
               4-205
               

               Cow position:
               
               

               Alignm length:
               204
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               25, 18
               

               Conread position:
               4-209
               

               Cow position:
               
               

               Alignm length:
               209
               

               Alignm identity:
               154
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               33, 18
               

               Conread position:
               4-212
               

               Cow position:
               
               

               Alignm length:
               211
               

               Alignm identity:
               118
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               25, 18
               

               Conread position:
               4-221
               

               Cow position:
               
               

               Alignm length:
               219
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               10, 81
               

               Conread position:
               4-231
               

               Cow position:
               
               

               Alignm length:
               229
               

               Alignm identity:
               170
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               11, 92
               

               Conread position:
               4-236
               

               Cow position:
               
               

               Alignm length:
               235
               

               Alignm identity:
               172
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               25, 18
               

               Conread position:
               4-238
               

               Cow position:
               
               

               Alignm length:
               237
               

               Alignm identity:
               181
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 18
               

               Conread position:
               4-238
               

               Cow position:
               
               

               Alignm length:
               237
               

               Alignm identity:
               178
               

               Alignm E-value:
               8.96831e-44
               

               Alignm gaps (pig, cow):
               25, 18
               

               Conread position:
               4-238
               

               Cow position:
               
               

               Alignm length:
               236
               

               Alignm identity:
               181
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 18
               

               Conread position:
               4-238
               

               Cow position:
               
               

               Alignm length:
               237
               

               Alignm identity:
               179
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               25, 18
               

               Conread position:
               4-238
               

               Cow position:
               
               

               Alignm length:
               237
               

               Alignm identity:
               177
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               25, 18
               

               Conread position:
               4-238
               

               Cow position:
               
               

               Alignm length:
               237
               

               Alignm identity:
               184
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 18
               

               Conread position:
               4-238
               

               Cow position:
               
               

               Alignm length:
               237
               

               Alignm identity:
               182
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 18
               

               Conread position:
               4-238
               

               Cow position:
               
               

               Alignm length:
               236
               

               Alignm identity:
               179
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 92
               

               Conread position:
               4-238
               

               Cow position:
               
               

               Alignm length:
               237
               

               Alignm identity:
               179
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               25, 18
               

               Conread position:
               4-238
               

               Cow position:
               
               

               Alignm length:
               236
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               11, 95
               

               Conread position:
               4-238
               

               Cow position:
               
               

               Alignm length:
               236
               

               Alignm identity:
               178
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 92
               

               Conread position:
               4-239
               

               Cow position:
               
               

               Alignm length:
               239
               

               Alignm identity:
               172
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               25, 18
               

               Conread position:
               6-159
               

               Cow position:
               
               

               Alignm length:
               162
               

               Alignm identity:
               124
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               21, 100
               

               Conread position:
               6-164
               

               Cow position:
               
               

               Alignm length:
               167
               

               Alignm identity:
               128
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               24, 97
               

               Conread position:
               6-177
               

               Cow position:
               
               

               Alignm length:
               181
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               27, 79
               

               Conread position:
               6-203
               

               Cow position:
               
               

               Alignm length:
               207
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               25, 97
               

               Conread position:
               6-214
               

               Cow position:
               
               

               Alignm length:
               217
               

               Alignm identity:
               169
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               25, 97
               

               Conread position:
               6-234
               

               Cow position:
               
               

               Alignm length:
               239
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               24, 96
               

               Conread position:
               6-237
               

               Cow position:
               
               

               Alignm length:
               239
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               25, 85
               

               Conread position:
               6-238
               

               Cow position:
               
               

               Alignm length:
               241
               

               Alignm identity:
               185
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 97
               

               Conread position:
               6-238
               

               Cow position:
               
               

               Alignm length:
               241
               

               Alignm identity:
               184
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               25, 86
               

               Conread position:
               6-238
               

               Cow position:
               
               

               Alignm length:
               241
               

               Alignm identity:
               182
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               23, 86
               

               Conread position:
               6-238
               

               Cow position:
               
               

               Alignm length:
               241
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               24, 86
               

               Conread position:
               6-238
               

               Cow position:
               
               

               Alignm length:
               240
               

               Alignm identity:
               184
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               24, 85
               

               Conread position:
               6-238
               

               Cow position:
               
               

               Alignm length:
               241
               

               Alignm identity:
               184
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               25, 97
               

               Conread position:
               6-238
               

               Cow position:
               
               

               Alignm length:
               241
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               25, 100
               

               Conread position:
               6-238
               

               Cow position:
               
               

               Alignm length:
               241
               

               Alignm identity:
               184
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               21, 97
               

               Conread position:
               6-238
               

               Cow position:
               
               

               Alignm length:
               241
               

               Alignm identity:
               182
               

               Alignm E-value:
               8.96831e-44
               

               Alignm gaps (pig, cow):
               24, 97
               

               Conread position:
               6-238
               

               Cow position:
               
               

               Alignm length:
               241
               

               Alignm identity:
               183
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               21, 97
               

               Conread position:
               6-238
               

               Cow position:
               
               

               Alignm length:
               241
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 101
               

               Conread position:
               6-238
               

               Cow position:
               
               

               Alignm length:
               241
               

               Alignm identity:
               183
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               25, 97
               

               Conread position:
               6-238
               

               Cow position:
               
               

               Alignm length:
               241
               

               Alignm identity:
               186
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 97
               

               Conread position:
               6-238
               

               Cow position:
               
               

               Alignm length:
               241
               

               Alignm identity:
               185
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 101
               

               Conread position:
               6-239
               

               Cow position:
               
               

               Alignm length:
               242
               

               Alignm identity:
               183
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               25, 78
               

               Conread position:
               7-239
               

               Cow position:
               
               

               Alignm length:
               233
               

               Alignm identity:
               164
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               18-236
               

               Cow position:
               
               

               Alignm length:
               220
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               165, 76
               

               Conread position:
               22-236
               

               Cow position:
               
               

               Alignm length:
               215
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               72, 0
               

               Conread position:
               27-180
               

               Cow position:
               
               

               Alignm length:
               154
               

               Alignm identity:
               115
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               27-181
               

               Cow position:
               
               

               Alignm length:
               155
               

               Alignm identity:
               112
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               27-190
               

               Cow position:
               
               

               Alignm length:
               164
               

               Alignm identity:
               124
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               27-229
               

               Cow position:
               
               

               Alignm length:
               203
               

               Alignm identity:
               149
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               27-236
               

               Cow position:
               
               

               Alignm length:
               210
               

               Alignm identity:
               165
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               27-236
               

               Cow position:
               
               

               Alignm length:
               210
               

               Alignm identity:
               161
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               27-236
               

               Cow position:
               
               

               Alignm length:
               210
               

               Alignm identity:
               159
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               27-236
               

               Cow position:
               
               

               Alignm length:
               210
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               27-236
               

               Cow position:
               
               

               Alignm length:
               211
               

               Alignm identity:
               163
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               114, 57
               

               Conread position:
               27-238
               

               Cow position:
               
               

               Alignm length:
               213
               

               Alignm identity:
               155
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               128, 57
               

               Conread position:
               27-238
               

               Cow position:
               
               

               Alignm length:
               212
               

               Alignm identity:
               163
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               27-238
               

               Cow position:
               
               

               Alignm length:
               214
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               120, 47
               

               Conread position:
               27-238
               

               Cow position:
               
               

               Alignm length:
               221
               

               Alignm identity:
               155
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               160, 67
               

               Conread position:
               27-238
               

               Cow position:
               
               

               Alignm length:
               212
               

               Alignm identity:
               160
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               27-238
               

               Cow position:
               
               

               Alignm length:
               217
               

               Alignm identity:
               154
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               161, 50
               

               Conread position:
               27-238
               

               Cow position:
               
               

               Alignm length:
               212
               

               Alignm identity:
               150
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               27-238
               

               Cow position:
               
               

               Alignm length:
               212
               

               Alignm identity:
               161
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               27-238
               

               Cow position:
               
               

               Alignm length:
               215
               

               Alignm identity:
               161
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               27-238
               

               Cow position:
               
               

               Alignm length:
               212
               

               Alignm identity:
               163
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               27-238
               

               Cow position:
               
               

               Alignm length:
               212
               

               Alignm identity:
               162
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               27-238
               

               Cow position:
               
               

               Alignm length:
               212
               

               Alignm identity:
               163
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               27-239
               

               Cow position:
               
               

               Alignm length:
               215
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               166, 57
               

               Conread position:
               27-239
               

               Cow position:
               
               

               Alignm length:
               222
               

               Alignm identity:
               154
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               142, 67
               

               Conread position:
               27-239
               

               Cow position:
               
               

               Alignm length:
               216
               

               Alignm identity:
               165
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               111, 46
               

               Conread position:
               27-239
               

               Cow position:
               
               

               Alignm length:
               213
               

               Alignm identity:
               163
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               27-239
               

               Cow position:
               
               

               Alignm length:
               213
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               28-239
               

               Cow position:
               
               

               Alignm length:
               213
               

               Alignm identity:
               154
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               141, 66
               

               Conread position:
               31-236
               

               Cow position:
               
               

               Alignm length:
               209
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               120, 53
               

               Conread position:
               31-239
               

               Cow position:
               
               

               Alignm length:
               211
               

               Alignm identity:
               150
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               41, 46
               

               Conread position:
               31-239
               

               Cow position:
               
               

               Alignm length:
               209
               

               Alignm identity:
               155
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               34-236
               

               Cow position:
               
               

               Alignm length:
               203
               

               Alignm identity:
               151
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               36-197
               

               Cow position:
               
               

               Alignm length:
               162
               

               Alignm identity:
               119
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               36-216
               

               Cow position:
               
               

               Alignm length:
               187
               

               Alignm identity:
               133
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               50, 143
               

               Conread position:
               36-238
               

               Cow position:
               
               

               Alignm length:
               204
               

               Alignm identity:
               148
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               105, 48
               

               Conread position:
               37-179
               

               Cow position:
               
               

               Alignm length:
               148
               

               Alignm identity:
               113
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               86, 47
               

               Conread position:
               37-239
               

               Cow position:
               
               

               Alignm length:
               203
               

               Alignm identity:
               146
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               41-239
               

               Cow position:
               
               

               Alignm length:
               199
               

               Alignm identity:
               154
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               46-180
               

               Cow position:
               
               

               Alignm length:
               135
               

               Alignm identity:
               105
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               48, 0
               
Show alignments to all cow chromosomes.