Cow genome map

Conread name: rcmu39_j5.y1

Conread position: 1-168
Cow position: chr21:36506449-36506623 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 132
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 9, 106

Conread position: 1-177
Cow position: chr21:15546299-15546476 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 138
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 9, 86

Conread position: 1-178
Cow position: chr21:34900293-34900469 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 135
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 14, 95

Conread position: 1-237
Cow position: chr21:3253012-3252766 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 189
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 9, 31

Conread position: 1-238
Cow position: chr21:2664776-2665017 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 181
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 9, 92

Conread position: 1-238
Cow position: chr21:4035873-4036110 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 179
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 9, 93

Conread position: 1-238
Cow position: chr21:5020535-5020291 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 189
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 9, 92

Conread position: 1-238
Cow position: chr21:10853654-10853410 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 181
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 9, 92

Conread position: 1-238
Cow position: chr21:37923576-37923332 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 92

Conread position: 1-238
Cow position: chr21:39470375-39470620 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 190
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 9, 104

Conread position: 1-239
Cow position: chr21:26699277-26699522 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 191
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 9, 91

Conread position: 2-239
Cow position: chr21:27263078-27262841 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 178
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 7, 90

Conread position: 3-222
Cow position: chr21:15274729-15274506 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 176
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 6, 83

Conread position: 4-149
Cow position: chr21:26874970-26874827 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 110
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 11, 92

Conread position: 4-178
Cow position: chr21:39417455-39417282 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 132
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 11, 81

Conread position: 4-221
Cow position: chr21:14533991-14533775 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 164
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 11, 92

Conread position: 4-238
Cow position: chr21:30056326-30056559 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 175
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 25, 18

Conread position: 4-238
Cow position: chr21:30297857-30297623 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 181
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 11, 19

Conread position: 4-238
Cow position: chr21:35024741-35024508 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 92

Conread position: 4-238
Cow position: chr21:36376368-36376135 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 176
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 12, 81

Conread position: 4-238
Cow position: chr21:41796343-41796576 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 18

Conread position: 4-238
Cow position: chr21:42917171-42916939 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 170
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 11, 92

Conread position: 5-239
Cow position: chr21:2524299-2524067 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 165
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 32, 89

Conread position: 6-157
Cow position: chr21:38866229-38866386 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 121
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 24, 97

Conread position: 6-168
Cow position: chr21:25598056-25597888 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 132
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 25, 97

Conread position: 6-226
Cow position: chr21:4097958-4097735 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 174
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 25, 86

Conread position: 6-226
Cow position: chr21:32237722-32237496 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 170
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 25, 97

Conread position: 6-236
Cow position: chr21:2514234-2513997 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 182
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 25, 86

Conread position: 6-236
Cow position: chr21:26615501-26615724 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 165
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 61, 71

Conread position: 6-237
Cow position: chr21:43099-42863 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 183
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 23, 86

Conread position: 6-238
Cow position: chr21:4898581-4898816 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 179
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 25, 97

Conread position: 6-238
Cow position: chr21:5642453-5642691 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 182
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 25, 97

Conread position: 6-238
Cow position: chr21:6864177-6864406 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 166
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 34, 80

Conread position: 6-238
Cow position: chr21:6966096-6966327 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 175
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 23, 16

Conread position: 6-238
Cow position: chr21:7047797-7048037 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 6-238
Cow position: chr21:11405497-11405735 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 184
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 21, 97

Conread position: 6-238
Cow position: chr21:11509324-11509086 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 179
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 25, 97

Conread position: 6-238
Cow position: chr21:19351478-19351716 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 184
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 25, 97

Conread position: 6-238
Cow position: chr21:27148169-27148406 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 182
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 25, 96

Conread position: 6-238
Cow position: chr21:27620117-27620351 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 181
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 25, 100

Conread position: 6-238
Cow position: chr21:30966560-30966798 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 183
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 25, 97

Conread position: 6-238
Cow position: chr21:34180714-34180952 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 183
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 25, 97

Conread position: 6-238
Cow position: chr21:34823559-34823321 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 182
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 21, 97

Conread position: 6-238
Cow position: chr21:39428785-39428547 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 182
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 25, 97

Conread position: 6-238
Cow position: chr21:48273814-48274052 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 97

Conread position: 6-239
Cow position: chr21:37323417-37323655 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 174
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 25, 66

Conread position: 8-234
Cow position: chr21:37374592-37374364 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 178
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 23, 84

Conread position: 8-238
Cow position: chr21:3804408-3804635 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 169
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 12, 0

Conread position: 19-239
Cow position: chr21:46974732-46974948 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 166
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 47, 0

Conread position: 26-235
Cow position: chr21:3046694-3046484 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 156
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 164, 57

Conread position: 26-238
Cow position: chr21:4733176-4733384 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 157
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 68, 113

Conread position: 27-165
Cow position: chr21:23489964-23490099 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 103
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 57, 0

Conread position: 27-179
Cow position: chr21:42460703-42460848 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 117
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 57, 0

Conread position: 27-189
Cow position: chr21:47977621-47977461 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 125
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 68, 0

Conread position: 27-207
Cow position: chr21:28908786-28908962 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 132
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 57, 0

Conread position: 27-218
Cow position: chr21:2768489-2768676 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 145
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 57, 0

Conread position: 27-221
Cow position: chr21:48262170-48261980 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 155
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 56, 0

Conread position: 27-225
Cow position: chr21:28476453-28476648 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 145
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 57, 0

Conread position: 27-230
Cow position: chr21:47944314-47944113 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 143
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 57, 0

Conread position: 27-234
Cow position: chr21:4586324-4586529 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 158
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 16, 58

Conread position: 27-235
Cow position: chr21:4722011-4721807 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 156
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 57, 0

Conread position: 27-235
Cow position: chr21:27428762-27428968 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 164
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 100, 57

Conread position: 27-235
Cow position: chr21:47360815-47361020 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 152
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 67, 0

Conread position: 27-236
Cow position: chr21:4559715-4559921 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 154
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 57, 0

Conread position: 27-236
Cow position: chr21:13112039-13112244 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 154
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 64, 0

Conread position: 27-236
Cow position: chr21:23548905-23549106 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 147
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 101, 67

Conread position: 27-236
Cow position: chr21:33710145-33710352 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 161
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 68, 0

Conread position: 27-237
Cow position: chr21:9895716-9895509 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 153
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 57, 0

Conread position: 27-238
Cow position: chr21:449522-449314 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 157
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 68, 0

Conread position: 27-238
Cow position: chr21:7062248-7062457 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 161
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 68, 0

Conread position: 27-238
Cow position: chr21:16890488-16890697 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 165
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 0

Conread position: 27-238
Cow position: chr21:18285160-18284956 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 153
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 81, 0

Conread position: 27-238
Cow position: chr21:22719743-22719950 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 155
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 57, 0

Conread position: 27-238
Cow position: chr21:30595736-30595945 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 158
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 67, 0

Conread position: 27-238
Cow position: chr21:33420614-33420831 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 166
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 59, 163

Conread position: 27-238
Cow position: chr21:33998162-33998377 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 166
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 8, 0

Conread position: 27-238
Cow position: chr21:47428697-47428488 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 162
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 57, 0

Conread position: 27-239
Cow position: chr21:1766165-1766374 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 162
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 56, 0

Conread position: 27-239
Cow position: chr21:26633875-26634083 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 153
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 57, 0

Conread position: 27-239
Cow position: chr21:48291997-48292206 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 166
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 57, 0

Conread position: 28-207
Cow position: chr21:33415712-33415892 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 133
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 7, 57

Conread position: 31-237
Cow position: chr21:25156650-25156435 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 160
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 141, 51

Conread position: 31-238
Cow position: chr21:31252340-31252144 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 151
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 53, 0

Conread position: 36-222
Cow position: chr21:22855258-22855079 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 132
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 36-239
Cow position: chr21:44862220-44862422 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 156
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 72, 48

Show alignments to all cow chromosomes.