Cow genome map

Conread name: rcmu39_j5.y1

Conread position: 1-178
Cow position: chr23:954595-954771 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 139
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 28, 21

Conread position: 1-237
Cow position: chr23:1010335-1010576 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 172
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 9, 101

Conread position: 1-238
Cow position: chr23:14265556-14265315 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 184
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 9, 92

Conread position: 1-238
Cow position: chr23:20153012-20153256 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 188
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 9, 92

Conread position: 1-238
Cow position: chr23:20541030-20540786 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 188
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 9, 92

Conread position: 1-239
Cow position: chr23:2737431-2737187 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 174
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 10, 102

Conread position: 2-236
Cow position: chr23:14970751-14970984 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 179
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 27, 20

Conread position: 3-161
Cow position: chr23:38935007-38935172 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 130
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 7, 101

Conread position: 4-178
Cow position: chr23:31772068-31772241 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 129
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 25, 18

Conread position: 4-238
Cow position: chr23:771293-771526 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 81

Conread position: 4-238
Cow position: chr23:3417130-3417363 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 177
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 25, 18

Conread position: 4-238
Cow position: chr23:5396382-5396615 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 179
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 25, 18

Conread position: 4-238
Cow position: chr23:10937104-10937337 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 177
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 25, 18

Conread position: 4-238
Cow position: chr23:14216026-14216258 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 178
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 11, 92

Conread position: 4-238
Cow position: chr23:25351558-25351325 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 92

Conread position: 4-238
Cow position: chr23:28083895-28084128 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 175
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 25, 18

Conread position: 4-238
Cow position: chr23:29042981-29042748 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 176
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 11, 80

Conread position: 4-238
Cow position: chr23:39745062-39744829 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 92

Conread position: 4-238
Cow position: chr23:41143639-41143406 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 179
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 25, 18

Conread position: 5-214
Cow position: chr23:7065567-7065770 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 146
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 10, 90

Conread position: 5-236
Cow position: chr23:13536627-13536399 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 173
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 136, 31

Conread position: 6-237
Cow position: chr23:31704098-31703861 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 97

Conread position: 6-238
Cow position: chr23:3285962-3285724 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 97

Conread position: 6-238
Cow position: chr23:4532494-4532732 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 97

Conread position: 6-238
Cow position: chr23:10679630-10679868 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 182
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 25, 97

Conread position: 6-238
Cow position: chr23:11079580-11079349 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 16

Conread position: 6-238
Cow position: chr23:11712464-11712702 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 183
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 25, 97

Conread position: 6-238
Cow position: chr23:21008401-21008639 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 97

Conread position: 6-238
Cow position: chr23:27974730-27974957 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 161
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 186, 78

Conread position: 6-238
Cow position: chr23:28221904-28221667 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 176
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 25, 103

Conread position: 6-238
Cow position: chr23:28987546-28987316 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 177
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 25, 97

Conread position: 6-238
Cow position: chr23:31605631-31605393 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 97

Conread position: 6-239
Cow position: chr23:24119758-24119519 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 184
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 25, 97

Conread position: 6-239
Cow position: chr23:25357549-25357310 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 178
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 25, 86

Conread position: 6-239
Cow position: chr23:30211456-30211677 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 165
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 24, 0

Conread position: 8-239
Cow position: chr23:16611615-16611845 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 180
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 21, 71

Conread position: 10-176
Cow position: chr23:21277435-21277606 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 135
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 23, 81

Conread position: 27-189
Cow position: chr23:33817619-33817463 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 122
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 57, 0

Conread position: 27-216
Cow position: chr23:24517008-24516826 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 137
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 99, 32

Conread position: 27-232
Cow position: chr23:26318458-26318256 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 148
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 156, 57

Conread position: 27-234
Cow position: chr23:29625148-29624949 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 151
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 55, 0

Conread position: 27-235
Cow position: chr23:26840137-26839931 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 160
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 57, 0

Conread position: 27-236
Cow position: chr23:10421704-10421913 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 150
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 39, 48

Conread position: 27-238
Cow position: chr23:609903-609694 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 159
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 68, 0

Conread position: 27-238
Cow position: chr23:4436806-4436598 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 159
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 165, 57

Conread position: 27-238
Cow position: chr23:5441092-5440883 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 165
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 0

Conread position: 27-238
Cow position: chr23:11128193-11127979 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 166
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 93, 57

Conread position: 27-238
Cow position: chr23:14790658-14790449 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 161
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 68, 0

Conread position: 27-239
Cow position: chr23:21772736-21772945 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 162
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 68, 0

Conread position: 28-238
Cow position: chr23:4516715-4516506 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 158
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 5, 56

Conread position: 31-238
Cow position: chr23:29441927-29442130 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 160
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 60, 0

Conread position: 32-238
Cow position: chr23:616100-616300 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 156
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 62, 0

Conread position: 36-196
Cow position: chr23:34347039-34346881 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 129
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 58, 0

Conread position: 36-211
Cow position: chr23:29460086-29460259 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 48, 0

Conread position: 36-238
Cow position: chr23:345290-345490 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 156
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 62, 0

Conread position: 44-238
Cow position: chr23:1248370-1248562 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 150
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 51, 0

Show alignments to all cow chromosomes.