Cow genome map
| Conread name: | rcmu39_j5.y1 |
| Conread position: | 1-178 |
| Cow position: | chr25:13430111-13430292 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 30, 79 |
| Conread position: | 1-214 |
| Cow position: | chr25:18265196-18264975 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 165 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 9, 93 |
| Conread position: | 1-236 |
| Cow position: | chr25:11043620-11043379 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 10, 92 |
| Conread position: | 1-238 |
| Cow position: | chr25:11896617-11896373 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 187 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 9, 92 |
| Conread position: | 1-238 |
| Cow position: | chr25:13960066-13959826 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 9, 92 |
| Conread position: | 1-238 |
| Cow position: | chr25:17586021-17586264 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 92 |
| Conread position: | 3-236 |
| Cow position: | chr25:20772331-20772569 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 186 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 28, 7 |
| Conread position: | 3-238 |
| Cow position: | chr25:29802748-29802990 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 183 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 6, 104 |
| Conread position: | 3-239 |
| Cow position: | chr25:3172402-3172645 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 183 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 7, 90 |
| Conread position: | 4-156 |
| Cow position: | chr25:6475466-6475617 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 25, 18 |
| Conread position: | 4-176 |
| Cow position: | chr25:35553658-35553486 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 25, 18 |
| Conread position: | 4-231 |
| Cow position: | chr25:31073608-31073834 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 25, 18 |
| Conread position: | 4-236 |
| Cow position: | chr25:11665664-11665429 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 25, 18 |
| Conread position: | 4-238 |
| Cow position: | chr25:26705894-26706127 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 92 |
| Conread position: | 6-186 |
| Cow position: | chr25:35039894-35040076 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 19, 75 |
| Conread position: | 6-190 |
| Cow position: | chr25:19139579-19139769 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 25, 97 |
| Conread position: | 6-232 |
| Cow position: | chr25:17904633-17904401 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 180 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 21, 97 |
| Conread position: | 6-238 |
| Cow position: | chr25:393256-393029 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 176 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 6-238 |
| Cow position: | chr25:8875546-8875784 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 97 |
| Conread position: | 6-238 |
| Cow position: | chr25:17562040-17561803 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 25, 85 |
| Conread position: | 6-238 |
| Cow position: | chr25:18190381-18190615 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 24, 98 |
| Conread position: | 6-238 |
| Cow position: | chr25:19337332-19337566 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 26, 86 |
| Conread position: | 6-238 |
| Cow position: | chr25:24007901-24007663 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 97 |
| Conread position: | 6-238 |
| Cow position: | chr25:27019244-27019482 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 25, 86 |
| Conread position: | 6-238 |
| Cow position: | chr25:28420712-28420944 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 174 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 24, 78 |
| Conread position: | 6-238 |
| Cow position: | chr25:29525874-29526106 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 176 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 33, 91 |
| Conread position: | 6-238 |
| Cow position: | chr25:32577669-32577906 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 181 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 25, 97 |
| Conread position: | 6-238 |
| Cow position: | chr25:34509186-34509424 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 179 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 25, 97 |
| Conread position: | 6-238 |
| Cow position: | chr25:34673593-34673817 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 186, 18 |
| Conread position: | 6-238 |
| Cow position: | chr25:36350733-36350495 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 181 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 24, 97 |
| Conread position: | 22-221 |
| Cow position: | chr25:11955802-11955603 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 7, 64 |
| Conread position: | 22-236 |
| Cow position: | chr25:33207308-33207519 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 45, 53 |
| Conread position: | 27-235 |
| Cow position: | chr25:10634042-10634246 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 161 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 27-236 |
| Cow position: | chr25:10136788-10136581 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 27-236 |
| Cow position: | chr25:21949762-21949558 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 27-236 |
| Cow position: | chr25:23326062-23326269 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 160 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 27-236 |
| Cow position: | chr25:26353820-26354027 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 159 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 27-238 |
| Cow position: | chr25:10704421-10704211 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 81, 56 |
| Conread position: | 27-238 |
| Cow position: | chr25:17657585-17657381 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 27-238 |
| Cow position: | chr25:22197422-22197631 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 27-238 |
| Cow position: | chr25:26781118-26781327 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 27-238 |
| Cow position: | chr25:33838347-33838135 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 62, 90 |
| Conread position: | 27-238 |
| Cow position: | chr25:34257142-34257351 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 160 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 27-238 |
| Cow position: | chr25:41120973-41120764 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 27-239 |
| Cow position: | chr25:11929584-11929784 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 27-239 |
| Cow position: | chr25:23999219-23999423 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 27-239 |
| Cow position: | chr25:24303301-24303510 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 45, 50 |
| Conread position: | 27-239 |
| Cow position: | chr25:33574763-33574970 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 27-239 |
| Cow position: | chr25:40657489-40657287 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 28-236 |
| Cow position: | chr25:25826412-25826211 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 9, 68 |
| Conread position: | 31-217 |
| Cow position: | chr25:41135783-41135967 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 147 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 31-238 |
| Cow position: | chr25:33688258-33688459 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 36-239 |
| Cow position: | chr25:1025490-1025696 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 48, 109 |
Show alignments to all cow chromosomes.