Cow genome map
| Conread name: | rcmu39_j5.y1 |
| Conread position: | 1-179 |
| Cow position: | chr27:12262301-12262481 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 9, 98 |
| Conread position: | 1-210 |
| Cow position: | chr27:3653490-3653705 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 9, 103 |
| Conread position: | 1-229 |
| Cow position: | chr27:30307067-30307293 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 14, 83 |
| Conread position: | 1-238 |
| Cow position: | chr27:1081952-1082196 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 185 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 8, 92 |
| Conread position: | 1-238 |
| Cow position: | chr27:15634132-15634368 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 9, 92 |
| Conread position: | 4-159 |
| Cow position: | chr27:20001615-20001461 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 11, 92 |
| Conread position: | 4-238 |
| Cow position: | chr27:2001044-2000811 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 180 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 29, 18 |
| Conread position: | 4-238 |
| Cow position: | chr27:4768634-4768401 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 11, 92 |
| Conread position: | 4-238 |
| Cow position: | chr27:5983831-5984064 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 25, 18 |
| Conread position: | 4-238 |
| Cow position: | chr27:13308843-13308610 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 179 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 25, 18 |
| Conread position: | 4-238 |
| Cow position: | chr27:13353505-13353272 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 179 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 25, 18 |
| Conread position: | 4-238 |
| Cow position: | chr27:22797458-22797691 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 178 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 28, 18 |
| Conread position: | 4-238 |
| Cow position: | chr27:27849469-27849236 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 177 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 11, 92 |
| Conread position: | 5-222 |
| Cow position: | chr27:31268414-31268202 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 168 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 67, 72 |
| Conread position: | 6-160 |
| Cow position: | chr27:13183068-13183219 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 6-173 |
| Cow position: | chr27:19488208-19488035 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 21, 97 |
| Conread position: | 6-178 |
| Cow position: | chr27:12006352-12006174 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 21, 97 |
| Conread position: | 6-218 |
| Cow position: | chr27:12281896-12281684 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 169 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 18, 81 |
| Conread position: | 6-234 |
| Cow position: | chr27:165715-165950 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 25, 100 |
| Conread position: | 6-238 |
| Cow position: | chr27:525895-526132 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 97 |
| Conread position: | 6-238 |
| Cow position: | chr27:1520884-1520646 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 86 |
| Conread position: | 6-238 |
| Cow position: | chr27:10579151-10578912 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 26, 100 |
| Conread position: | 6-238 |
| Cow position: | chr27:15544219-15543981 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 183 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 21, 97 |
| Conread position: | 6-238 |
| Cow position: | chr27:16031193-16031431 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 100 |
| Conread position: | 6-239 |
| Cow position: | chr27:1536374-1536146 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 25, 86 |
| Conread position: | 27-171 |
| Cow position: | chr27:3866342-3866200 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 27-217 |
| Cow position: | chr27:14297382-14297194 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 27-219 |
| Cow position: | chr27:8291018-8290831 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 57, 40 |
| Conread position: | 27-232 |
| Cow position: | chr27:8427032-8426829 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 27-234 |
| Cow position: | chr27:15374989-15374789 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 189, 49 |
| Conread position: | 27-238 |
| Cow position: | chr27:8959854-8960063 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 161 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 27-238 |
| Cow position: | chr27:11434350-11434142 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 27-238 |
| Cow position: | chr27:15272893-15273106 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 196, 71 |
| Conread position: | 27-238 |
| Cow position: | chr27:26784997-26784788 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 161 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 27-238 |
| Cow position: | chr27:27556981-27556774 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 164 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 27-239 |
| Cow position: | chr27:31249417-31249211 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 45, 50 |
| Conread position: | 28-213 |
| Cow position: | chr27:12277285-12277102 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 7, 19 |
| Conread position: | 28-239 |
| Cow position: | chr27:21204033-21204242 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 5, 67 |
| Conread position: | 36-179 |
| Cow position: | chr27:22329662-22329521 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 114, 58 |
| Conread position: | 36-209 |
| Cow position: | chr27:4804954-4804782 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 109, 58 |
| Conread position: | 36-238 |
| Cow position: | chr27:12146477-12146677 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 158 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 36-238 |
| Cow position: | chr27:27729321-27729521 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 48, 0 |
Show alignments to all cow chromosomes.