Cow genome map

Conread name: rcmu39_j5.y1

Conread position: 1-232
Cow position: chr28:1811717-1811941 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 171
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 8, 84

Conread position: 1-236
Cow position: chr28:10772339-10772099 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 186
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 6, 102

Conread position: 1-236
Cow position: chr28:19834370-19834121 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 191
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 9, 206

Conread position: 1-237
Cow position: chr28:10280104-10279868 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 175
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 9, 88

Conread position: 1-238
Cow position: chr28:2088831-2088586 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 181
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 9, 93

Conread position: 1-238
Cow position: chr28:3627269-3627027 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 187
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 9, 103

Conread position: 1-238
Cow position: chr28:7907290-7907533 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 102

Conread position: 1-238
Cow position: chr28:8717697-8717941 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 92

Conread position: 1-238
Cow position: chr28:34583180-34582936 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 188
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 9, 103

Conread position: 1-238
Cow position: chr28:34597500-34597256 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 187
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 6, 92

Conread position: 3-230
Cow position: chr28:10162484-10162258 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 170
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 8, 90

Conread position: 4-171
Cow position: chr28:331655-331821 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 130
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 11, 92

Conread position: 4-236
Cow position: chr28:1956614-1956383 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 172
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 25, 18

Conread position: 4-236
Cow position: chr28:6478464-6478233 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 177
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 25, 18

Conread position: 4-237
Cow position: chr28:6776758-6776990 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 172
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 11, 95

Conread position: 4-238
Cow position: chr28:4929205-4929438 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 175
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 25, 18

Conread position: 4-238
Cow position: chr28:6472194-6472425 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 176
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 25, 13

Conread position: 4-238
Cow position: chr28:7829751-7829519 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 175
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 11, 92

Conread position: 4-238
Cow position: chr28:12217044-12217277 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 92

Conread position: 4-238
Cow position: chr28:15054401-15054172 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 175
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 25, 18

Conread position: 4-238
Cow position: chr28:16181613-16181380 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 180
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 25, 18

Conread position: 4-238
Cow position: chr28:23310091-23310324 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 92

Conread position: 4-238
Cow position: chr28:24886105-24885872 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 175
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 11, 92

Conread position: 4-238
Cow position: chr28:25849806-25849573 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 92

Conread position: 4-239
Cow position: chr28:482463-482697 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 18

Conread position: 4-239
Cow position: chr28:17369325-17369100 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 169
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 11, 81

Conread position: 6-173
Cow position: chr28:6320044-6319872 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 136
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 25, 97

Conread position: 6-212
Cow position: chr28:34649622-34649408 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 153
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 46, 166

Conread position: 6-236
Cow position: chr28:11501972-11502202 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 177
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 26, 90

Conread position: 6-236
Cow position: chr28:22230082-22230316 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 177
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 25, 99

Conread position: 6-237
Cow position: chr28:29473241-29473003 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 169
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 64, 71

Conread position: 6-238
Cow position: chr28:5312224-5311986 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 183
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 25, 97

Conread position: 6-238
Cow position: chr28:7059480-7059242 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 180
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 25, 97

Conread position: 6-238
Cow position: chr28:7336233-7335995 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 182
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 25, 86

Conread position: 6-238
Cow position: chr28:7443219-7443457 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 183
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 24, 97

Conread position: 6-238
Cow position: chr28:9288143-9288381 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 97

Conread position: 6-238
Cow position: chr28:10194355-10194593 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 97

Conread position: 6-238
Cow position: chr28:13323383-13323145 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 183
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 25, 97

Conread position: 6-238
Cow position: chr28:15604867-15604623 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 181
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 27, 0

Conread position: 6-238
Cow position: chr28:20967419-20967657 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 86

Conread position: 6-238
Cow position: chr28:21896532-21896294 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 97

Conread position: 6-238
Cow position: chr28:28357534-28357771 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 173
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 25, 86

Conread position: 6-238
Cow position: chr28:28471275-28471035 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 182
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 25, 97

Conread position: 6-238
Cow position: chr28:28929083-28928848 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 178
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 34, 25

Conread position: 6-238
Cow position: chr28:28934713-28934951 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 178
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 24, 100

Conread position: 6-238
Cow position: chr28:33639820-33639582 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 177
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 25, 86

Conread position: 6-238
Cow position: chr28:34730982-34730744 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 183
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 25, 97

Conread position: 6-239
Cow position: chr28:444658-444419 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 185
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 25, 100

Conread position: 6-239
Cow position: chr28:5637300-5637062 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 181
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 25, 86

Conread position: 6-239
Cow position: chr28:15917275-15917514 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 180
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 25, 86

Conread position: 11-217
Cow position: chr28:20408136-20407937 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 148
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 181, 55

Conread position: 22-238
Cow position: chr28:5791283-5791496 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 165
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 7, 64

Conread position: 24-238
Cow position: chr28:2644939-2644727 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 166
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 71, 0

Conread position: 27-158
Cow position: chr28:16597371-16597242 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 102
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 57, 0

Conread position: 27-211
Cow position: chr28:7685715-7685897 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 140
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 55, 0

Conread position: 27-222
Cow position: chr28:1197347-1197155 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 152
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 13, 0

Conread position: 27-222
Cow position: chr28:3652460-3652271 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 151
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 55, 0

Conread position: 27-226
Cow position: chr28:25826897-25827094 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 151
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 57, 0

Conread position: 27-230
Cow position: chr28:5816865-5816664 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 149
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 57, 0

Conread position: 27-233
Cow position: chr28:15600516-15600717 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 158
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 181, 67

Conread position: 27-234
Cow position: chr28:26923409-26923614 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 160
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 67, 0

Conread position: 27-235
Cow position: chr28:17030874-17031073 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 157
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 57, 0

Conread position: 27-236
Cow position: chr28:14666367-14666161 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 156
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 104, 57

Conread position: 27-236
Cow position: chr28:28184612-28184399 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 162
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 64, 125

Conread position: 27-238
Cow position: chr28:3004298-3004509 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 159
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 27-238
Cow position: chr28:4958283-4958498 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 156
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 134, 55

Conread position: 27-238
Cow position: chr28:5825070-5824847 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 165
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 63, 0

Conread position: 27-238
Cow position: chr28:9182090-9181881 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 162
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 68, 0

Conread position: 27-238
Cow position: chr28:10479669-10479876 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 157
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 55, 0

Conread position: 27-238
Cow position: chr28:13880741-13880531 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 162
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 45, 50

Conread position: 27-238
Cow position: chr28:30304789-30304997 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 156
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 60, 43

Conread position: 27-238
Cow position: chr28:32730793-32731000 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 160
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 56, 0

Conread position: 27-239
Cow position: chr28:10303059-10302849 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 164
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 71, 0

Conread position: 27-239
Cow position: chr28:24499269-24499061 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 161
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 166, 56

Conread position: 28-233
Cow position: chr28:25596124-25595920 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 158
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 9, 67

Conread position: 31-207
Cow position: chr28:23839237-23839063 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 137
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 53, 0

Conread position: 31-235
Cow position: chr28:25701720-25701918 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 152
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 61, 0

Conread position: 36-236
Cow position: chr28:13522897-13522701 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 155
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 145, 48

Conread position: 36-236
Cow position: chr28:31848722-31848915 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 153
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 162, 48

Conread position: 36-238
Cow position: chr28:24671005-24670806 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 156
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 48, 0

Conread position: 37-239
Cow position: chr28:2662749-2662947 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 155
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 152, 55

Conread position: 40-239
Cow position: chr28:5569572-5569381 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 146
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 42, 0

Conread position: 43-234
Cow position: chr28:25762089-25761905 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 142
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 41, 0

Conread position: 44-190
Cow position: chr28:30249289-30249433 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 112
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 51, 0

Conread position: 45-238
Cow position: chr28:26717935-26717742 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 145
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.