Cow genome map
| Conread name: | rcmu39_j5.y1 |
| Conread position: | 1-231 |
| Cow position: | chr29:16012947-16013181 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 9, 89 |
| Conread position: | 1-238 |
| Cow position: | chr29:607419-607654 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 179 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 9, 27 |
| Conread position: | 1-238 |
| Cow position: | chr29:15117599-15117843 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 188 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 9, 103 |
| Conread position: | 1-238 |
| Cow position: | chr29:19515119-19515361 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 9, 90 |
| Conread position: | 1-238 |
| Cow position: | chr29:32515555-32515311 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 9, 103 |
| Conread position: | 1-239 |
| Cow position: | chr29:29702184-29702413 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 3-238 |
| Cow position: | chr29:726954-726712 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 187 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 6, 101 |
| Conread position: | 4-178 |
| Cow position: | chr29:15072265-15072438 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 25, 18 |
| Conread position: | 4-189 |
| Cow position: | chr29:12194564-12194380 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 25, 18 |
| Conread position: | 4-190 |
| Cow position: | chr29:40294523-40294338 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 25, 18 |
| Conread position: | 4-219 |
| Cow position: | chr29:13624158-13624372 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 25, 18 |
| Conread position: | 4-236 |
| Cow position: | chr29:19525074-19525304 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 175 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 25, 18 |
| Conread position: | 4-236 |
| Cow position: | chr29:27702293-27702062 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 18 |
| Conread position: | 4-237 |
| Cow position: | chr29:1478667-1478436 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 18 |
| Conread position: | 4-238 |
| Cow position: | chr29:3329808-3329575 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 177 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 25, 18 |
| Conread position: | 4-238 |
| Cow position: | chr29:10846172-10845939 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 175 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 11, 81 |
| Conread position: | 4-238 |
| Cow position: | chr29:15699528-15699295 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 178 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 25, 18 |
| Conread position: | 4-238 |
| Cow position: | chr29:15966338-15966571 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 29, 92 |
| Conread position: | 4-238 |
| Cow position: | chr29:21227192-21226960 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 179 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 25, 18 |
| Conread position: | 4-238 |
| Cow position: | chr29:21429644-21429877 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 177 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 11, 92 |
| Conread position: | 4-238 |
| Cow position: | chr29:22746116-22745883 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 92 |
| Conread position: | 4-238 |
| Cow position: | chr29:28657152-28657385 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 177 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 11, 81 |
| Conread position: | 4-238 |
| Cow position: | chr29:34524106-34524339 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 177 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 11, 92 |
| Conread position: | 4-238 |
| Cow position: | chr29:35265133-35264900 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 92 |
| Conread position: | 6-226 |
| Cow position: | chr29:6218585-6218811 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 177 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 27, 96 |
| Conread position: | 6-229 |
| Cow position: | chr29:38746269-38746039 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 177 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 21, 97 |
| Conread position: | 6-232 |
| Cow position: | chr29:11786224-11785993 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 177 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 25, 86 |
| Conread position: | 6-237 |
| Cow position: | chr29:7723887-7723661 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 23, 16 |
| Conread position: | 6-238 |
| Cow position: | chr29:2484129-2483891 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 182 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 25, 86 |
| Conread position: | 6-238 |
| Cow position: | chr29:4163909-4163671 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 184 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 25, 97 |
| Conread position: | 6-238 |
| Cow position: | chr29:7847613-7847372 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 6-238 |
| Cow position: | chr29:13585436-13585199 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 181 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 25, 42 |
| Conread position: | 6-238 |
| Cow position: | chr29:16036196-16036434 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 183 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 25, 97 |
| Conread position: | 6-238 |
| Cow position: | chr29:17153461-17153231 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 177 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 31, 91 |
| Conread position: | 6-238 |
| Cow position: | chr29:21474370-21474132 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 182 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 25, 97 |
| Conread position: | 6-238 |
| Cow position: | chr29:31184597-31184359 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 97 |
| Conread position: | 6-238 |
| Cow position: | chr29:32291815-32291576 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 86 |
| Conread position: | 6-238 |
| Cow position: | chr29:32556523-32556761 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 182 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 25, 97 |
| Conread position: | 6-238 |
| Cow position: | chr29:35956081-35956319 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 184 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 25, 97 |
| Conread position: | 6-238 |
| Cow position: | chr29:40156965-40156727 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 183 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 21, 97 |
| Conread position: | 6-238 |
| Cow position: | chr29:40618632-40618855 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 25, 83 |
| Conread position: | 6-238 |
| Cow position: | chr29:42255757-42255995 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 25, 97 |
| Conread position: | 6-239 |
| Cow position: | chr29:1576765-1576992 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 181, 26 |
| Conread position: | 6-239 |
| Cow position: | chr29:15941806-15942043 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 26, 95 |
| Conread position: | 6-239 |
| Cow position: | chr29:31765261-31765022 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 184 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 25, 97 |
| Conread position: | 6-239 |
| Cow position: | chr29:34331207-34331447 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 184 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 27, 97 |
| Conread position: | 19-230 |
| Cow position: | chr29:4864522-4864321 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 89, 12 |
| Conread position: | 22-239 |
| Cow position: | chr29:13057939-13057726 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 7, 73 |
| Conread position: | 22-239 |
| Cow position: | chr29:18361399-18361614 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 50, 55 |
| Conread position: | 27-179 |
| Cow position: | chr29:35280923-35281073 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 27-192 |
| Cow position: | chr29:27857764-27857601 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 27-214 |
| Cow position: | chr29:32800467-32800286 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 101, 14 |
| Conread position: | 27-218 |
| Cow position: | chr29:17408324-17408135 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 27-236 |
| Cow position: | chr29:19890760-19890540 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 111, 57 |
| Conread position: | 27-237 |
| Cow position: | chr29:32543330-32543121 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 119, 57 |
| Conread position: | 27-237 |
| Cow position: | chr29:45651349-45651566 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 169 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 27-238 |
| Cow position: | chr29:3585020-3585226 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 27-238 |
| Cow position: | chr29:11159332-11159541 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 160 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 27-238 |
| Cow position: | chr29:14839212-14839005 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 26, 37 |
| Conread position: | 27-238 |
| Cow position: | chr29:31094394-31094603 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 160 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 27-239 |
| Cow position: | chr29:13027414-13027204 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 27-239 |
| Cow position: | chr29:23754630-23754850 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 28, 117 |
| Conread position: | 27-239 |
| Cow position: | chr29:34737500-34737711 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 164 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 74, 55 |
| Conread position: | 31-233 |
| Cow position: | chr29:27813872-27813679 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 163, 13 |
| Conread position: | 36-209 |
| Cow position: | chr29:8666845-8666676 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 36-239 |
| Cow position: | chr29:12797765-12797566 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 145, 56 |
| Conread position: | 36-239 |
| Cow position: | chr29:24577835-24577634 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 48, 0 |
Show alignments to all cow chromosomes.