Cow genome map

Conread name: rcmu39_j5.y1

Conread position: 1-178
Cow position:
Alignm length: 179
Alignm identity: 134
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 14, 95

Conread position: 1-212
Cow position:
Alignm length: 221
Alignm identity: 160
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 9, 92

Conread position: 1-236
Cow position:
Alignm length: 245
Alignm identity: 184
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 9, 92

Conread position: 1-238
Cow position:
Alignm length: 240
Alignm identity: 181
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 32, 21

Conread position: 1-238
Cow position:
Alignm length: 247
Alignm identity: 188
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 9, 103

Conread position: 1-238
Cow position:
Alignm length: 247
Alignm identity: 184
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 9, 92

Conread position: 1-238
Cow position:
Alignm length: 247
Alignm identity: 184
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 9, 92

Conread position: 1-238
Cow position:
Alignm length: 246
Alignm identity: 186
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 30, 91

Conread position: 1-238
Cow position:
Alignm length: 246
Alignm identity: 185
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 30, 91

Conread position: 1-238
Cow position:
Alignm length: 247
Alignm identity: 187
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 9, 92

Conread position: 1-238
Cow position:
Alignm length: 247
Alignm identity: 182
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 9, 92

Conread position: 3-235
Cow position:
Alignm length: 242
Alignm identity: 181
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 6, 101

Conread position: 3-238
Cow position:
Alignm length: 244
Alignm identity: 185
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 28, 100

Conread position: 4-160
Cow position:
Alignm length: 159
Alignm identity: 116
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 25, 18

Conread position: 4-161
Cow position:
Alignm length: 159
Alignm identity: 119
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 11, 92

Conread position: 4-164
Cow position:
Alignm length: 162
Alignm identity: 121
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 11, 92

Conread position: 4-173
Cow position:
Alignm length: 172
Alignm identity: 131
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 25, 18

Conread position: 4-206
Cow position:
Alignm length: 205
Alignm identity: 152
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 25, 18

Conread position: 4-214
Cow position:
Alignm length: 212
Alignm identity: 158
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 11, 92

Conread position: 4-221
Cow position:
Alignm length: 219
Alignm identity: 161
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 11, 95

Conread position: 4-236
Cow position:
Alignm length: 235
Alignm identity: 178
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 28, 18

Conread position: 4-236
Cow position:
Alignm length: 234
Alignm identity: 171
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 11, 81

Conread position: 4-237
Cow position:
Alignm length: 236
Alignm identity: 175
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 25, 13

Conread position: 4-237
Cow position:
Alignm length: 235
Alignm identity: 175
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 11, 92

Conread position: 4-237
Cow position:
Alignm length: 236
Alignm identity: 178
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 25, 18

Conread position: 4-238
Cow position:
Alignm length: 236
Alignm identity: 177
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 11, 81

Conread position: 4-238
Cow position:
Alignm length: 237
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 18

Conread position: 4-238
Cow position:
Alignm length: 236
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 92

Conread position: 4-238
Cow position:
Alignm length: 237
Alignm identity: 175
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 25, 18

Conread position: 4-238
Cow position:
Alignm length: 237
Alignm identity: 179
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 25, 18

Conread position: 4-238
Cow position:
Alignm length: 236
Alignm identity: 175
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 11, 81

Conread position: 4-238
Cow position:
Alignm length: 236
Alignm identity: 177
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 11, 92

Conread position: 4-238
Cow position:
Alignm length: 236
Alignm identity: 176
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 11, 92

Conread position: 4-238
Cow position:
Alignm length: 236
Alignm identity: 176
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 11, 92

Conread position: 4-238
Cow position:
Alignm length: 236
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 92

Conread position: 4-238
Cow position:
Alignm length: 236
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 92

Conread position: 4-238
Cow position:
Alignm length: 237
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 18

Conread position: 4-238
Cow position:
Alignm length: 237
Alignm identity: 179
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 25, 18

Conread position: 4-238
Cow position:
Alignm length: 252
Alignm identity: 185
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 25, 18

Conread position: 4-239
Cow position:
Alignm length: 238
Alignm identity: 178
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 29, 79

Conread position: 4-239
Cow position:
Alignm length: 238
Alignm identity: 156
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 6, 135

Conread position: 4-239
Cow position:
Alignm length: 238
Alignm identity: 179
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 25, 18

Conread position: 5-239
Cow position:
Alignm length: 237
Alignm identity: 169
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 10, 73

Conread position: 5-239
Cow position:
Alignm length: 237
Alignm identity: 163
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 30, 73

Conread position: 6-151
Cow position:
Alignm length: 148
Alignm identity: 115
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 23, 91

Conread position: 6-172
Cow position:
Alignm length: 175
Alignm identity: 138
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 25, 86

Conread position: 6-188
Cow position:
Alignm length: 191
Alignm identity: 142
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 25, 86

Conread position: 6-190
Cow position:
Alignm length: 194
Alignm identity: 147
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 25, 98

Conread position: 6-190
Cow position:
Alignm length: 193
Alignm identity: 147
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 21, 97

Conread position: 6-218
Cow position:
Alignm length: 221
Alignm identity: 165
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 21, 97

Conread position: 6-234
Cow position:
Alignm length: 233
Alignm identity: 172
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 25, 82

Conread position: 6-235
Cow position:
Alignm length: 238
Alignm identity: 173
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 25, 97

Conread position: 6-236
Cow position:
Alignm length: 244
Alignm identity: 187
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 25, 96

Conread position: 6-236
Cow position:
Alignm length: 244
Alignm identity: 180
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 25, 86

Conread position: 6-237
Cow position:
Alignm length: 241
Alignm identity: 180
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 24, 79

Conread position: 6-237
Cow position:
Alignm length: 240
Alignm identity: 178
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 25, 86

Conread position: 6-238
Cow position:
Alignm length: 235
Alignm identity: 177
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 33, 91

Conread position: 6-238
Cow position:
Alignm length: 241
Alignm identity: 184
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 25, 100

Conread position: 6-238
Cow position:
Alignm length: 241
Alignm identity: 175
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 24, 97

Conread position: 6-238
Cow position:
Alignm length: 242
Alignm identity: 174
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 25, 84

Conread position: 6-238
Cow position:
Alignm length: 241
Alignm identity: 178
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 21, 97

Conread position: 6-238
Cow position:
Alignm length: 241
Alignm identity: 180
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 25, 97

Conread position: 6-238
Cow position:
Alignm length: 241
Alignm identity: 184
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 25, 97

Conread position: 6-238
Cow position:
Alignm length: 241
Alignm identity: 182
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 25, 86

Conread position: 6-238
Cow position:
Alignm length: 241
Alignm identity: 182
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 25, 97

Conread position: 6-238
Cow position:
Alignm length: 241
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 97

Conread position: 6-238
Cow position:
Alignm length: 241
Alignm identity: 183
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 25, 97

Conread position: 6-238
Cow position:
Alignm length: 241
Alignm identity: 182
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 25, 97

Conread position: 6-238
Cow position:
Alignm length: 241
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 97

Conread position: 6-238
Cow position:
Alignm length: 235
Alignm identity: 171
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 33, 80

Conread position: 6-238
Cow position:
Alignm length: 241
Alignm identity: 184
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 25, 86

Conread position: 6-238
Cow position:
Alignm length: 241
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 86

Conread position: 6-238
Cow position:
Alignm length: 241
Alignm identity: 182
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 25, 97

Conread position: 6-238
Cow position:
Alignm length: 241
Alignm identity: 182
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 25, 97

Conread position: 6-239
Cow position:
Alignm length: 244
Alignm identity: 183
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 27, 86

Conread position: 6-239
Cow position:
Alignm length: 243
Alignm identity: 166
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 24, 101

Conread position: 6-239
Cow position:
Alignm length: 242
Alignm identity: 184
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 25, 97

Conread position: 6-239
Cow position:
Alignm length: 242
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 97

Conread position: 6-239
Cow position:
Alignm length: 242
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 97

Conread position: 6-239
Cow position:
Alignm length: 237
Alignm identity: 181
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 33, 73

Conread position: 6-239
Cow position:
Alignm length: 235
Alignm identity: 174
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 9, 22

Conread position: 6-239
Cow position:
Alignm length: 242
Alignm identity: 183
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 25, 86

Conread position: 21-183
Cow position:
Alignm length: 165
Alignm identity: 121
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 18, 65

Conread position: 26-174
Cow position:
Alignm length: 149
Alignm identity: 118
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 58, 0

Conread position: 26-235
Cow position:
Alignm length: 214
Alignm identity: 144
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 116, 58

Conread position: 26-238
Cow position:
Alignm length: 215
Alignm identity: 154
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 125, 56

Conread position: 27-173
Cow position:
Alignm length: 147
Alignm identity: 116
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 68, 0

Conread position: 27-188
Cow position:
Alignm length: 162
Alignm identity: 124
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 57, 0

Conread position: 27-204
Cow position:
Alignm length: 178
Alignm identity: 145
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 67, 0

Conread position: 27-206
Cow position:
Alignm length: 180
Alignm identity: 131
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 57, 0

Conread position: 27-212
Cow position:
Alignm length: 186
Alignm identity: 143
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 68, 0

Conread position: 27-214
Cow position:
Alignm length: 188
Alignm identity: 142
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 67, 0

Conread position: 27-218
Cow position:
Alignm length: 192
Alignm identity: 155
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 57, 0

Conread position: 27-218
Cow position:
Alignm length: 192
Alignm identity: 139
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 54, 0

Conread position: 27-225
Cow position:
Alignm length: 199
Alignm identity: 137
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 57, 0

Conread position: 27-227
Cow position:
Alignm length: 201
Alignm identity: 153
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 57, 0

Conread position: 27-232
Cow position:
Alignm length: 206
Alignm identity: 158
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 57, 0

Conread position: 27-232
Cow position:
Alignm length: 207
Alignm identity: 158
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 69, 174

Conread position: 27-233
Cow position:
Alignm length: 207
Alignm identity: 160
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 68, 0

Conread position: 27-235
Cow position:
Alignm length: 209
Alignm identity: 158
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 57, 0

Conread position: 27-236
Cow position:
Alignm length: 211
Alignm identity: 159
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 16, 69

Conread position: 27-237
Cow position:
Alignm length: 211
Alignm identity: 160
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 57, 0

Conread position: 27-237
Cow position:
Alignm length: 212
Alignm identity: 159
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 201, 57

Conread position: 27-238
Cow position:
Alignm length: 212
Alignm identity: 159
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 71, 0

Conread position: 27-238
Cow position:
Alignm length: 212
Alignm identity: 161
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 68, 0

Conread position: 27-238
Cow position:
Alignm length: 219
Alignm identity: 166
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 99, 68

Conread position: 27-238
Cow position:
Alignm length: 213
Alignm identity: 152
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 16, 58

Conread position: 27-238
Cow position:
Alignm length: 212
Alignm identity: 154
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 66, 0

Conread position: 27-238
Cow position:
Alignm length: 213
Alignm identity: 152
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 203, 56

Conread position: 27-238
Cow position:
Alignm length: 219
Alignm identity: 156
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 46, 0

Conread position: 27-238
Cow position:
Alignm length: 212
Alignm identity: 162
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 57, 0

Conread position: 27-238
Cow position:
Alignm length: 212
Alignm identity: 153
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 57, 0

Conread position: 27-238
Cow position:
Alignm length: 212
Alignm identity: 154
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 57, 0

Conread position: 27-238
Cow position:
Alignm length: 212
Alignm identity: 162
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 57, 0

Conread position: 27-238
Cow position:
Alignm length: 212
Alignm identity: 160
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 57, 0

Conread position: 27-238
Cow position:
Alignm length: 212
Alignm identity: 154
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 57, 0

Conread position: 27-238
Cow position:
Alignm length: 212
Alignm identity: 154
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 67, 0

Conread position: 27-239
Cow position:
Alignm length: 214
Alignm identity: 158
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 122, 64

Conread position: 27-239
Cow position:
Alignm length: 213
Alignm identity: 150
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 67, 0

Conread position: 27-239
Cow position:
Alignm length: 214
Alignm identity: 165
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 15, 58

Conread position: 27-239
Cow position:
Alignm length: 214
Alignm identity: 166
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 111, 57

Conread position: 27-239
Cow position:
Alignm length: 213
Alignm identity: 161
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 67, 0

Conread position: 27-239
Cow position:
Alignm length: 213
Alignm identity: 162
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 57, 0

Conread position: 27-239
Cow position:
Alignm length: 213
Alignm identity: 158
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 68, 0

Conread position: 27-239
Cow position:
Alignm length: 213
Alignm identity: 155
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 57, 0

Conread position: 28-237
Cow position:
Alignm length: 211
Alignm identity: 160
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 9, 67

Conread position: 31-238
Cow position:
Alignm length: 208
Alignm identity: 154
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 51, 0

Conread position: 31-239
Cow position:
Alignm length: 211
Alignm identity: 161
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 161, 53

Conread position: 36-221
Cow position:
Alignm length: 187
Alignm identity: 138
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 90, 46

Conread position: 36-231
Cow position:
Alignm length: 197
Alignm identity: 111
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 130, 48

Conread position: 36-234
Cow position:
Alignm length: 199
Alignm identity: 145
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 48, 0

Conread position: 36-235
Cow position:
Alignm length: 200
Alignm identity: 150
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 48, 0

Conread position: 36-238
Cow position:
Alignm length: 206
Alignm identity: 153
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 7, 57

Conread position: 36-238
Cow position:
Alignm length: 203
Alignm identity: 153
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 48, 0

Conread position: 36-239
Cow position:
Alignm length: 204
Alignm identity: 155
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 47, 0

Conread position: 37-236
Cow position:
Alignm length: 207
Alignm identity: 144
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 103, 66

Conread position: 37-238
Cow position:
Alignm length: 202
Alignm identity: 160
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 47, 0

Conread position: 37-238
Cow position:
Alignm length: 202
Alignm identity: 155
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 58, 0

Conread position: 38-239
Cow position:
Alignm length: 203
Alignm identity: 153
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 152, 56

Conread position: 41-238
Cow position:
Alignm length: 198
Alignm identity: 149
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 43, 0

Conread position: 44-168
Cow position:
Alignm length: 125
Alignm identity: 96
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 51, 0

Show alignments to all cow chromosomes.