Cow genome map

Conread name: rcmu39_j5.y1

Conread position: 1-159
Cow position:
Alignm length: 168
Alignm identity: 124
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 6, 60

Conread position: 1-191
Cow position:
Alignm length: 200
Alignm identity: 149
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 30, 0

Conread position: 1-238
Cow position:
Alignm length: 247
Alignm identity: 183
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 9, 92

Conread position: 1-238
Cow position:
Alignm length: 247
Alignm identity: 180
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 8, 92

Conread position: 1-238
Cow position:
Alignm length: 239
Alignm identity: 179
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 7, 25

Conread position: 1-238
Cow position:
Alignm length: 239
Alignm identity: 180
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 14, 95

Conread position: 1-238
Cow position:
Alignm length: 247
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 92

Conread position: 2-236
Cow position:
Alignm length: 244
Alignm identity: 184
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 5, 91

Conread position: 3-238
Cow position:
Alignm length: 251
Alignm identity: 192
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 8, 101

Conread position: 3-238
Cow position:
Alignm length: 245
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 101

Conread position: 3-238
Cow position:
Alignm length: 239
Alignm identity: 166
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 33, 94

Conread position: 4-198
Cow position:
Alignm length: 197
Alignm identity: 148
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 25, 18

Conread position: 4-232
Cow position:
Alignm length: 231
Alignm identity: 170
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 25, 18

Conread position: 4-236
Cow position:
Alignm length: 234
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 20

Conread position: 4-236
Cow position:
Alignm length: 234
Alignm identity: 176
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 11, 92

Conread position: 4-236
Cow position:
Alignm length: 235
Alignm identity: 177
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 25, 18

Conread position: 4-238
Cow position:
Alignm length: 237
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 18

Conread position: 4-238
Cow position:
Alignm length: 236
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 95

Conread position: 4-238
Cow position:
Alignm length: 237
Alignm identity: 180
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 25, 18

Conread position: 4-238
Cow position:
Alignm length: 237
Alignm identity: 176
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 25, 18

Conread position: 4-238
Cow position:
Alignm length: 236
Alignm identity: 178
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 11, 95

Conread position: 4-238
Cow position:
Alignm length: 237
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 92

Conread position: 4-238
Cow position:
Alignm length: 237
Alignm identity: 177
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 25, 18

Conread position: 4-238
Cow position:
Alignm length: 236
Alignm identity: 174
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 11, 92

Conread position: 4-238
Cow position:
Alignm length: 236
Alignm identity: 176
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 21, 92

Conread position: 4-238
Cow position:
Alignm length: 238
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 4-238
Cow position:
Alignm length: 237
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 18

Conread position: 4-238
Cow position:
Alignm length: 236
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 92

Conread position: 4-238
Cow position:
Alignm length: 237
Alignm identity: 176
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 25, 18

Conread position: 4-238
Cow position:
Alignm length: 236
Alignm identity: 172
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 11, 92

Conread position: 5-238
Cow position:
Alignm length: 235
Alignm identity: 177
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 10, 91

Conread position: 5-239
Cow position:
Alignm length: 237
Alignm identity: 178
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 24, 12

Conread position: 6-176
Cow position:
Alignm length: 179
Alignm identity: 135
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 25, 97

Conread position: 6-179
Cow position:
Alignm length: 175
Alignm identity: 135
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 132, 60

Conread position: 6-189
Cow position:
Alignm length: 192
Alignm identity: 144
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 25, 97

Conread position: 6-192
Cow position:
Alignm length: 199
Alignm identity: 146
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 23, 84

Conread position: 6-207
Cow position:
Alignm length: 212
Alignm identity: 160
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 24, 97

Conread position: 6-221
Cow position:
Alignm length: 218
Alignm identity: 166
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 9, 94

Conread position: 6-222
Cow position:
Alignm length: 227
Alignm identity: 161
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 25, 96

Conread position: 6-226
Cow position:
Alignm length: 228
Alignm identity: 176
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 25, 84

Conread position: 6-236
Cow position:
Alignm length: 239
Alignm identity: 183
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 25, 97

Conread position: 6-236
Cow position:
Alignm length: 239
Alignm identity: 178
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 25, 86

Conread position: 6-238
Cow position:
Alignm length: 241
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 97

Conread position: 6-238
Cow position:
Alignm length: 234
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 90

Conread position: 6-238
Cow position:
Alignm length: 239
Alignm identity: 171
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 33, 84

Conread position: 6-238
Cow position:
Alignm length: 241
Alignm identity: 181
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 25, 97

Conread position: 6-238
Cow position:
Alignm length: 241
Alignm identity: 181
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 25, 97

Conread position: 6-238
Cow position:
Alignm length: 241
Alignm identity: 181
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 25, 97

Conread position: 6-238
Cow position:
Alignm length: 241
Alignm identity: 181
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 25, 97

Conread position: 6-238
Cow position:
Alignm length: 241
Alignm identity: 181
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 25, 97

Conread position: 6-238
Cow position:
Alignm length: 241
Alignm identity: 183
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 25, 97

Conread position: 6-238
Cow position:
Alignm length: 241
Alignm identity: 184
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 25, 100

Conread position: 6-238
Cow position:
Alignm length: 241
Alignm identity: 180
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 25, 100

Conread position: 6-238
Cow position:
Alignm length: 241
Alignm identity: 180
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 21, 97

Conread position: 6-238
Cow position:
Alignm length: 241
Alignm identity: 182
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 25, 97

Conread position: 6-238
Cow position:
Alignm length: 241
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 97

Conread position: 6-238
Cow position:
Alignm length: 241
Alignm identity: 178
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 25, 86

Conread position: 6-238
Cow position:
Alignm length: 241
Alignm identity: 180
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 25, 97

Conread position: 6-238
Cow position:
Alignm length: 244
Alignm identity: 185
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 21, 97

Conread position: 6-238
Cow position:
Alignm length: 240
Alignm identity: 183
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 21, 85

Conread position: 6-238
Cow position:
Alignm length: 241
Alignm identity: 178
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 25, 100

Conread position: 6-238
Cow position:
Alignm length: 241
Alignm identity: 180
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 25, 97

Conread position: 6-238
Cow position:
Alignm length: 241
Alignm identity: 181
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 25, 86

Conread position: 6-238
Cow position:
Alignm length: 241
Alignm identity: 183
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 25, 97

Conread position: 7-236
Cow position:
Alignm length: 231
Alignm identity: 167
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 145, 15

Conread position: 22-234
Cow position:
Alignm length: 214
Alignm identity: 161
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 7, 75

Conread position: 22-235
Cow position:
Alignm length: 216
Alignm identity: 156
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 7, 64

Conread position: 22-238
Cow position:
Alignm length: 219
Alignm identity: 164
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 7, 64

Conread position: 25-234
Cow position:
Alignm length: 210
Alignm identity: 150
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 59, 0

Conread position: 26-222
Cow position:
Alignm length: 197
Alignm identity: 153
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 58, 0

Conread position: 26-236
Cow position:
Alignm length: 211
Alignm identity: 163
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 68, 0

Conread position: 27-149
Cow position:
Alignm length: 123
Alignm identity: 97
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 68, 0

Conread position: 27-169
Cow position:
Alignm length: 143
Alignm identity: 105
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 55, 0

Conread position: 27-179
Cow position:
Alignm length: 153
Alignm identity: 112
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 57, 0

Conread position: 27-183
Cow position:
Alignm length: 157
Alignm identity: 118
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 57, 0

Conread position: 27-187
Cow position:
Alignm length: 161
Alignm identity: 124
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 67, 0

Conread position: 27-190
Cow position:
Alignm length: 164
Alignm identity: 124
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 57, 0

Conread position: 27-204
Cow position:
Alignm length: 180
Alignm identity: 134
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 109, 56

Conread position: 27-218
Cow position:
Alignm length: 193
Alignm identity: 146
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 172, 57

Conread position: 27-219
Cow position:
Alignm length: 193
Alignm identity: 142
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 57, 0

Conread position: 27-225
Cow position:
Alignm length: 200
Alignm identity: 156
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 99, 57

Conread position: 27-226
Cow position:
Alignm length: 200
Alignm identity: 156
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 57, 0

Conread position: 27-227
Cow position:
Alignm length: 202
Alignm identity: 156
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 165, 57

Conread position: 27-233
Cow position:
Alignm length: 207
Alignm identity: 162
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 57, 0

Conread position: 27-233
Cow position:
Alignm length: 208
Alignm identity: 150
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 75, 64

Conread position: 27-233
Cow position:
Alignm length: 209
Alignm identity: 150
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 171, 57

Conread position: 27-234
Cow position:
Alignm length: 208
Alignm identity: 155
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 57, 0

Conread position: 27-236
Cow position:
Alignm length: 210
Alignm identity: 166
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 0

Conread position: 27-236
Cow position:
Alignm length: 210
Alignm identity: 160
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 57, 0

Conread position: 27-236
Cow position:
Alignm length: 210
Alignm identity: 160
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 57, 0

Conread position: 27-236
Cow position:
Alignm length: 210
Alignm identity: 159
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 57, 0

Conread position: 27-236
Cow position:
Alignm length: 211
Alignm identity: 150
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 187, 57

Conread position: 27-238
Cow position:
Alignm length: 212
Alignm identity: 157
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 57, 0

Conread position: 27-238
Cow position:
Alignm length: 212
Alignm identity: 150
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 64, 0

Conread position: 27-238
Cow position:
Alignm length: 212
Alignm identity: 155
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 71, 0

Conread position: 27-238
Cow position:
Alignm length: 212
Alignm identity: 153
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 71, 0

Conread position: 27-238
Cow position:
Alignm length: 214
Alignm identity: 156
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 99, 57

Conread position: 27-238
Cow position:
Alignm length: 213
Alignm identity: 164
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 111, 57

Conread position: 27-238
Cow position:
Alignm length: 212
Alignm identity: 159
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 57, 0

Conread position: 27-238
Cow position:
Alignm length: 212
Alignm identity: 155
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 57, 0

Conread position: 27-238
Cow position:
Alignm length: 215
Alignm identity: 156
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 144, 68

Conread position: 27-239
Cow position:
Alignm length: 216
Alignm identity: 156
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 45, 50

Conread position: 27-239
Cow position:
Alignm length: 213
Alignm identity: 161
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 57, 0

Conread position: 27-239
Cow position:
Alignm length: 215
Alignm identity: 153
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 163, 67

Conread position: 27-239
Cow position:
Alignm length: 213
Alignm identity: 158
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 57, 0

Conread position: 27-239
Cow position:
Alignm length: 214
Alignm identity: 161
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 45, 50

Conread position: 27-239
Cow position:
Alignm length: 213
Alignm identity: 159
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 50, 0

Conread position: 27-239
Cow position:
Alignm length: 213
Alignm identity: 158
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 57, 0

Conread position: 27-239
Cow position:
Alignm length: 218
Alignm identity: 165
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 59, 0

Conread position: 27-239
Cow position:
Alignm length: 214
Alignm identity: 149
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 120, 57

Conread position: 27-239
Cow position:
Alignm length: 213
Alignm identity: 166
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 67, 0

Conread position: 27-239
Cow position:
Alignm length: 213
Alignm identity: 153
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 56, 0

Conread position: 28-214
Cow position:
Alignm length: 187
Alignm identity: 136
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 56, 0

Conread position: 28-235
Cow position:
Alignm length: 209
Alignm identity: 164
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 125, 56

Conread position: 28-236
Cow position:
Alignm length: 210
Alignm identity: 163
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 5, 57

Conread position: 28-238
Cow position:
Alignm length: 212
Alignm identity: 158
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 9, 19

Conread position: 28-239
Cow position:
Alignm length: 213
Alignm identity: 152
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 196, 56

Conread position: 31-234
Cow position:
Alignm length: 204
Alignm identity: 153
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 63, 0

Conread position: 31-237
Cow position:
Alignm length: 208
Alignm identity: 162
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 46, 54

Conread position: 31-238
Cow position:
Alignm length: 208
Alignm identity: 154
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 53, 0

Conread position: 31-238
Cow position:
Alignm length: 208
Alignm identity: 151
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 53, 0

Conread position: 31-238
Cow position:
Alignm length: 208
Alignm identity: 159
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 10, 0

Conread position: 36-222
Cow position:
Alignm length: 188
Alignm identity: 140
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 160, 55

Conread position: 36-235
Cow position:
Alignm length: 200
Alignm identity: 155
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 48, 0

Conread position: 36-238
Cow position:
Alignm length: 203
Alignm identity: 143
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 48, 0

Conread position: 36-238
Cow position:
Alignm length: 203
Alignm identity: 148
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 62, 0

Conread position: 36-239
Cow position:
Alignm length: 204
Alignm identity: 155
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 58, 0

Conread position: 36-239
Cow position:
Alignm length: 204
Alignm identity: 155
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 48, 0

Conread position: 37-238
Cow position:
Alignm length: 203
Alignm identity: 150
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 112, 47

Conread position: 37-238
Cow position:
Alignm length: 203
Alignm identity: 148
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 89, 47

Conread position: 37-239
Cow position:
Alignm length: 205
Alignm identity: 147
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 151, 57

Conread position: 39-238
Cow position:
Alignm length: 207
Alignm identity: 145
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 127, 0

Conread position: 42-239
Cow position:
Alignm length: 211
Alignm identity: 158
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 9, 99

Conread position: 43-190
Cow position:
Alignm length: 148
Alignm identity: 118
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 51, 0

Conread position: 43-235
Cow position:
Alignm length: 193
Alignm identity: 142
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 41, 0

Conread position: 68-236
Cow position:
Alignm length: 171
Alignm identity: 126
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 40, 30

Show alignments to all cow chromosomes.